Miyakogusa Predicted Gene
- Lj1g3v4719640.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4719640.1 tr|B9HBX4|B9HBX4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_561472 PE=4 SV=1,69.57,0,WD
REPEAT CONTAINING PROTEIN,NULL; no description,WD40/YVTN
repeat-like-containing domain; WD40 repe,CUFF.33026.1
(352 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G26640.1 | Symbols: LWD2 | Transducin/WD40 repeat-like superf... 356 2e-98
AT1G12910.1 | Symbols: ATAN11, LWD1 | Transducin/WD40 repeat-lik... 350 9e-97
AT5G24520.2 | Symbols: TTG1, TTG | Transducin/WD40 repeat-like s... 325 3e-89
AT5G24520.3 | Symbols: TTG1, TTG | Transducin/WD40 repeat-like s... 325 3e-89
AT5G24520.1 | Symbols: TTG1, TTG, URM23, ATTTG1 | Transducin/WD4... 325 3e-89
AT1G29260.1 | Symbols: PEX7, ATPEX7 | peroxin 7 | chr1:10224923-... 70 3e-12
AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin fam... 63 3e-10
AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein / ... 62 6e-10
AT5G58230.1 | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40 rep... 54 2e-07
AT5G43920.1 | Symbols: | transducin family protein / WD-40 repe... 53 3e-07
AT3G63460.1 | Symbols: | transducin family protein / WD-40 repe... 53 3e-07
AT3G63460.3 | Symbols: | transducin family protein / WD-40 repe... 53 3e-07
AT3G63460.2 | Symbols: | transducin family protein / WD-40 repe... 53 3e-07
AT5G67320.1 | Symbols: HOS15 | WD-40 repeat family protein | chr... 52 5e-07
AT5G27945.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 50 2e-06
AT2G32950.1 | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | Tran... 49 4e-06
AT2G19540.1 | Symbols: | Transducin family protein / WD-40 repe... 49 4e-06
AT1G53090.2 | Symbols: SPA4 | SPA1-related 4 | chr1:19783748-197... 49 8e-06
AT1G53090.1 | Symbols: SPA4 | SPA1-related 4 | chr1:19783748-197... 49 8e-06
>AT3G26640.1 | Symbols: LWD2 | Transducin/WD40 repeat-like
superfamily protein | chr3:9793276-9794316 FORWARD
LENGTH=346
Length = 346
Score = 356 bits (913), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 174/342 (50%), Positives = 236/342 (69%), Gaps = 10/342 (2%)
Query: 14 SQTEKSQEGIHTYAAQWPIFSIAWSLRRDKTPRLAIGSYLEDYANKVELIHFNHDDTTSN 73
S+ + + I+TY A W I+++ WS+RRDK RLAI S +E Y N+VE++ D++
Sbjct: 12 SEEQSKRSEIYTYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQL--DESNGE 69
Query: 74 FTTDPRLILDHPYAPTNTMFFPSEDTTNPDLIATSGDIIRLWEIQED--KIQLKSSLIGN 131
+DP L +HPY PT T F P ++ PDL+ATS D +RLW I +D +++LKS L +
Sbjct: 70 IRSDPNLCFEHPYPPTKTSFIPDKECQRPDLLATSSDFLRLWRISDDESRVELKSCLSSD 129
Query: 132 KVSDHSA-ITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVYDISWGGF 190
K S+ S ITSFDW E + I +SS+DTTCTIWDIEREV++ QL+AHDKEVYDI+WGG
Sbjct: 130 KNSEFSGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGV 189
Query: 191 NVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKVV 250
VFASVS DGSVRVFDLRDKE STIIYE+ PL+RL WNK D R+MATV + S K+V
Sbjct: 190 GVFASVSEDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPRYMATVIMGSAKIV 249
Query: 251 ILDIRLPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEVVDPPGYGSTVIG 310
+LDIR P P++EL +H+ VNA++W+P ++CS DD+ ALIW++ G V G
Sbjct: 250 VLDIRFPALPVVELQRHQASVNAIAWAPHSSSHICSAGDDSQALIWDI---SSMGQHVEG 306
Query: 311 GEVVEPAMWYGSPAEINHVRWSPVGMDWIALAFLNNLQLLKV 352
G ++P + Y + AE+ ++WS DW+A+AF N LQ+L+V
Sbjct: 307 G--LDPILAYTAGAEVEQLQWSSSQPDWVAIAFSNKLQILRV 346
>AT1G12910.1 | Symbols: ATAN11, LWD1 | Transducin/WD40 repeat-like
superfamily protein | chr1:4395114-4396154 REVERSE
LENGTH=346
Length = 346
Score = 350 bits (898), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 172/342 (50%), Positives = 235/342 (68%), Gaps = 10/342 (2%)
Query: 14 SQTEKSQEGIHTYAAQWPIFSIAWSLRRDKTPRLAIGSYLEDYANKVELIHFNHDDTTSN 73
S ++ + I+TY A W I+++ WS+RRDK RLAI S LE Y N+VE++ D++
Sbjct: 12 SDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQL--DESNGE 69
Query: 74 FTTDPRLILDHPYAPTNTMFFPSEDTTNPDLIATSGDIIRLWEIQED--KIQLKSSLIGN 131
+DP L +HPY PT T+F P ++ PDL+ATS D +RLW I +D +++LKS L N
Sbjct: 70 IRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRLWRIADDHSRVELKSCLNSN 129
Query: 132 KVSDHSA-ITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVYDISWGGF 190
K S+ +TSFDW E + I +SS DTTCTIWDIERE ++ QL+AHDKEV+DI+WGG
Sbjct: 130 KNSEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGV 189
Query: 191 NVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKVV 250
VFASVS DGSVRVFDLRDKE STIIYE+ D PL+RL WNK D R+MAT+ ++S KVV
Sbjct: 190 GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 249
Query: 251 ILDIRLPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEVVDPPGYGSTVIG 310
+LDIR P P++EL +H+ VNA++W+P ++C+ DD+ ALIW++ G V G
Sbjct: 250 VLDIRFPALPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDI---SSMGQHVEG 306
Query: 311 GEVVEPAMWYGSPAEINHVRWSPVGMDWIALAFLNNLQLLKV 352
G ++P + Y + AEI ++WS DW+A+AF LQ+L+V
Sbjct: 307 G--LDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346
>AT5G24520.2 | Symbols: TTG1, TTG | Transducin/WD40 repeat-like
superfamily protein | chr5:8371708-8372733 REVERSE
LENGTH=341
Length = 341
Score = 325 bits (833), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 165/334 (49%), Positives = 227/334 (67%), Gaps = 15/334 (4%)
Query: 25 TYAAQWPIFSIAWS-LRRDKTPRLAIGSYLEDYANKVELIHFNHDDTTSNFTTDPRLILD 83
TY + +P++++A+S LR R+A+GS+LEDY N+++++ F+ D T P L +
Sbjct: 17 TYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMT--VKPLPNLSFE 74
Query: 84 HPYAPTNTMFFPS--EDTTNPDLIATSGDIIRLWEIQEDK--IQLKSSLIGNKVSDHSA- 138
HPY PT MF P ++ DL+A+SGD +RLWEI ED ++ S L +K S+ A
Sbjct: 75 HPYPPTKLMFSPPSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAP 134
Query: 139 ITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVYDISWGGFNVFASVSG 198
+TSFDW + + + + S+DTTCTIWDIE+ V+ QL+AHDKEV+DI+WG VFASVS
Sbjct: 135 LTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSA 194
Query: 199 DGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKVVILDIRLPT 258
DGSVR+FDLRDKE STIIYE+P D PLLRL WNK D R+MAT+ ++SNKVVILDIR PT
Sbjct: 195 DGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT 254
Query: 259 TPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEVVDPPGYGSTVIGGEVVEPAM 318
P+ EL +H+ VNA++W+P +++CS DD ALIWE+ TV G ++P
Sbjct: 255 MPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWEL-------PTVAGPNGIDPMS 307
Query: 319 WYGSPAEINHVRWSPVGMDWIALAFLNNLQLLKV 352
Y + +EIN ++WS DWI +AF N +QLL+V
Sbjct: 308 VYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV 341
>AT5G24520.3 | Symbols: TTG1, TTG | Transducin/WD40 repeat-like
superfamily protein | chr5:8371708-8372733 REVERSE
LENGTH=341
Length = 341
Score = 325 bits (833), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 165/334 (49%), Positives = 227/334 (67%), Gaps = 15/334 (4%)
Query: 25 TYAAQWPIFSIAWS-LRRDKTPRLAIGSYLEDYANKVELIHFNHDDTTSNFTTDPRLILD 83
TY + +P++++A+S LR R+A+GS+LEDY N+++++ F+ D T P L +
Sbjct: 17 TYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMT--VKPLPNLSFE 74
Query: 84 HPYAPTNTMFFPS--EDTTNPDLIATSGDIIRLWEIQEDK--IQLKSSLIGNKVSDHSA- 138
HPY PT MF P ++ DL+A+SGD +RLWEI ED ++ S L +K S+ A
Sbjct: 75 HPYPPTKLMFSPPSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAP 134
Query: 139 ITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVYDISWGGFNVFASVSG 198
+TSFDW + + + + S+DTTCTIWDIE+ V+ QL+AHDKEV+DI+WG VFASVS
Sbjct: 135 LTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSA 194
Query: 199 DGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKVVILDIRLPT 258
DGSVR+FDLRDKE STIIYE+P D PLLRL WNK D R+MAT+ ++SNKVVILDIR PT
Sbjct: 195 DGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT 254
Query: 259 TPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEVVDPPGYGSTVIGGEVVEPAM 318
P+ EL +H+ VNA++W+P +++CS DD ALIWE+ TV G ++P
Sbjct: 255 MPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWEL-------PTVAGPNGIDPMS 307
Query: 319 WYGSPAEINHVRWSPVGMDWIALAFLNNLQLLKV 352
Y + +EIN ++WS DWI +AF N +QLL+V
Sbjct: 308 VYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV 341
>AT5G24520.1 | Symbols: TTG1, TTG, URM23, ATTTG1 | Transducin/WD40
repeat-like superfamily protein | chr5:8371708-8372733
REVERSE LENGTH=341
Length = 341
Score = 325 bits (833), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 165/334 (49%), Positives = 227/334 (67%), Gaps = 15/334 (4%)
Query: 25 TYAAQWPIFSIAWS-LRRDKTPRLAIGSYLEDYANKVELIHFNHDDTTSNFTTDPRLILD 83
TY + +P++++A+S LR R+A+GS+LEDY N+++++ F+ D T P L +
Sbjct: 17 TYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMT--VKPLPNLSFE 74
Query: 84 HPYAPTNTMFFPS--EDTTNPDLIATSGDIIRLWEIQEDK--IQLKSSLIGNKVSDHSA- 138
HPY PT MF P ++ DL+A+SGD +RLWEI ED ++ S L +K S+ A
Sbjct: 75 HPYPPTKLMFSPPSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAP 134
Query: 139 ITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVYDISWGGFNVFASVSG 198
+TSFDW + + + + S+DTTCTIWDIE+ V+ QL+AHDKEV+DI+WG VFASVS
Sbjct: 135 LTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSA 194
Query: 199 DGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKVVILDIRLPT 258
DGSVR+FDLRDKE STIIYE+P D PLLRL WNK D R+MAT+ ++SNKVVILDIR PT
Sbjct: 195 DGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT 254
Query: 259 TPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEVVDPPGYGSTVIGGEVVEPAM 318
P+ EL +H+ VNA++W+P +++CS DD ALIWE+ TV G ++P
Sbjct: 255 MPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWEL-------PTVAGPNGIDPMS 307
Query: 319 WYGSPAEINHVRWSPVGMDWIALAFLNNLQLLKV 352
Y + +EIN ++WS DWI +AF N +QLL+V
Sbjct: 308 VYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV 341
>AT1G29260.1 | Symbols: PEX7, ATPEX7 | peroxin 7 |
chr1:10224923-10225876 FORWARD LENGTH=317
Length = 317
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)
Query: 139 ITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVYDISWG--GFNVFASV 196
+ S D+ + +SS D T +W ++R H VY W +VFAS
Sbjct: 109 VQSVDYNPTRRDSFLTSSWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPKHGDVFASA 168
Query: 197 SGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKVVILDIRL 256
SGD ++R++D+R+ + II P D +L +WNK D +AT ++ V + D+R
Sbjct: 169 SGDCTLRIWDVREPGSTMII---PAHDFEILSCDWNKYDDCILATSSVDKT-VKVWDVRS 224
Query: 257 PTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWE 297
PL L+ H V V +SP + S S D + +W+
Sbjct: 225 YRVPLAVLNGHGYAVRKVKFSPHRRSLIASCSYDMSVCLWD 265
>AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin family
protein / WD-40 repeat family protein |
chr2:7281615-7283583 REVERSE LENGTH=415
Length = 415
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 12/163 (7%)
Query: 144 WAEFDTNLIASSSVDTTCTIWDI----EREVMNAQLV--AHDKEVYDISW--GGFNVFAS 195
W+ F + S S D +WD+ + +V+NA V H+ + D+SW N+F S
Sbjct: 176 WSPFKEGYLLSGSQDQKICLWDVSATPQDKVLNAMFVYEGHESAIADVSWHMKNENLFGS 235
Query: 196 VSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKVVILDIR 255
DG + ++D R + + ++ V + + L +N + +AT +S V + D+R
Sbjct: 236 AGEDGRLVIWDTRTNQ---MQHQVKVHEREVNYLSFNPFNEWVLATASSDST-VALFDLR 291
Query: 256 LPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEV 298
PL +S H V V W P + L S +D ++W++
Sbjct: 292 KLNAPLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDL 334
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Query: 137 SAITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVYDISWGGFN--VFA 194
SAI W + NL S+ D IWD M Q+ H++EV +S+ FN V A
Sbjct: 218 SAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWVLA 277
Query: 195 SVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKVV---- 250
+ S D +V +FDLR + + ++ + + ++EW+ + +A+ G + +V
Sbjct: 278 TASSDSTVALFDLR--KLNAPLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLN 335
Query: 251 -----ILDIRL-----PTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEVVD 300
L+I L P L H+ ++ +W+ + SV++D + +W++ +
Sbjct: 336 RVGEEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKNEPWVIASVAEDNSLQVWQMAE 395
>AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein /
WD-40 repeat family protein | chr4:16682752-16684751
REVERSE LENGTH=424
Length = 424
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 144 WAEFDTNLIASSSVDTTCTIWDIER----EVMNAQLV--AHDKEVYDISW--GGFNVFAS 195
W+ F + S S D +WD+ +V+N V H + D++W N+F S
Sbjct: 177 WSSFKEGYLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGS 236
Query: 196 VSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKVVILDIR 255
D + ++DLR + + ++ V + + L +N + +AT +S V + D+R
Sbjct: 237 AGDDCQLVIWDLRTNQ---MQHQVKVHEREINYLSFNPFNEWVLATASSDST-VALFDLR 292
Query: 256 LPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEV 298
T PL LSKH V V W P + L S +D ++W++
Sbjct: 293 KLTAPLHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDI 335
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 18/181 (9%)
Query: 136 HSAITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVYDISWGGFN--VF 193
S I W + N+ S+ D IWD+ M Q+ H++E+ +S+ FN V
Sbjct: 218 QSIIEDVAWHMKNENIFGSAGDDCQLVIWDLRTNQMQHQVKVHEREINYLSFNPFNEWVL 277
Query: 194 ASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVG---------I 244
A+ S D +V +FDLR + + ++ + + ++EW+ + +A+ G I
Sbjct: 278 ATASSDSTVALFDLR--KLTAPLHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDI 335
Query: 245 NSNKVVILDIRL-----PTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEVV 299
N L+I L P L H+ ++ +W+ + SV++D + +W++
Sbjct: 336 NRVGDEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKDEPWVISSVAEDNSLQVWQMA 395
Query: 300 D 300
+
Sbjct: 396 E 396
>AT5G58230.1 | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40
repeat-like superfamily protein | chr5:23556112-23557994
FORWARD LENGTH=424
Length = 424
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/377 (22%), Positives = 153/377 (40%), Gaps = 58/377 (15%)
Query: 25 TYAAQWPIFSIAWSLRRDK-------TPRLAIGSYL-EDYANKVELIHFN---------- 66
T+A +WP ++ W R++ ++ +G++ E N + L
Sbjct: 37 THALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSESEPNYLMLAQVQLPLDDTESEA 96
Query: 67 --HDDTTSNF------TTDPRLI--LDHPYAPTNTMFFPSEDTTNPDLIATSGDIIRLWE 116
+DD S F T ++I ++H + P NP +IAT ++
Sbjct: 97 RQYDDDRSEFGGFGCATGKVQIIQQINHDGEVNRARYMPQ----NPFIIATKTVNAEVYV 152
Query: 117 IQEDKIQLKSSLIGN-----KVSDHSAIT-SFDWAEFDTNLIASSSVDTTCTIWDI---- 166
K K L G K+ HS+ W++F + S S D +WDI
Sbjct: 153 FDYSKHPSKPPLDGACNPDLKLRGHSSEGYGLSWSKFKQGHLLSGSDDAQICLWDINATP 212
Query: 167 EREVMNAQLV--AHDKEVYDISWGGFN--VFASVSGDGSVRVFDLRDKEKSTIIYENPVQ 222
+ + ++AQ + AH+ V D++W + +F SV D + ++DLR S +
Sbjct: 213 KNKSLDAQQIFKAHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRSPSASKPVQSVVAH 272
Query: 223 DCPLLRLEWNKSDARFMATVGINSNKVVILDIRLPTTPLMELSKHRTCVNAVSWSPGYGR 282
+ L +N + +AT G V + D+R +T L H+ V V W+P
Sbjct: 273 SMEVNCLAFNPFNEWVVAT-GSTDKTVKLFDLRKLSTALHTFDSHKEEVFQVGWNPKNET 331
Query: 283 NLCSVSDDATALIWEV--VDPPGYGSTVIGGEVVEPAMWY---GSPAEINHVRWSPVGMD 337
L S ++W++ +D TV E P + + G ++I+ W+P D
Sbjct: 332 ILASCCLGRRLMVWDLSRIDEE---QTVEDAEDGPPELLFIHGGHTSKISDFSWNPC-ED 387
Query: 338 WI--ALAFLNNLQLLKV 352
W+ ++A N LQ+ ++
Sbjct: 388 WVISSVAEDNILQIWQM 404
>AT5G43920.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:17673397-17675630 FORWARD
LENGTH=523
Length = 523
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 126/294 (42%), Gaps = 29/294 (9%)
Query: 19 SQEGIHTYAAQWPIFSIAWSLRRDKTPRLAIGSYLEDYANKVELIHFNHDDTTSNFTTDP 78
S G + A +I W + D ++ + LE + N V + ++ DDT +
Sbjct: 233 SNSGKYLATASSDCTAIIWKVLDDN--KVELKHTLESHQNPVSFVSWSPDDTKLLTCGNA 290
Query: 79 RL---------ILDHPYAPTNTMFFPSEDTTNPD---LIATSGDIIR---LWEIQEDKIQ 123
+ +L H + NT F S PD L+ S D R +W+ ++I+
Sbjct: 291 EVLKLWDVDTGVLRHTFGNNNTGFTVSSCAWFPDSTRLVCGSSDPERGIVMWDTDGNEIK 350
Query: 124 LKSSLIGNKVSDHSAITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVY 183
KV D A+T D + + D I ++E +V ++++ ++ +
Sbjct: 351 AWRGTRIPKVVD-LAVTP------DGESMITVFSDKEIRILNLETKV--ERVISEEQPIT 401
Query: 184 DISWGGFNVFASVS-GDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATV 242
+S G F V+ + ++DL + K + + Q ++R + D+ F+A+
Sbjct: 402 SLSISGDGKFFIVNLSCQEIHLWDLAGEWKQPLKFSGHRQSKYVIRSCFGGLDSSFIAS- 460
Query: 243 GINSNKVVILDIRLPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIW 296
G ++V I +++ T PL LS H VN VSW+P R L S SDD T IW
Sbjct: 461 GSEDSQVYIWNLK-NTKPLEVLSGHSMTVNCVSWNPKNPRMLASASDDQTIRIW 513
>AT3G63460.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr3:23431009-23437241 REVERSE
LENGTH=1104
Length = 1104
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 11/184 (5%)
Query: 125 KSSLIGNKVSDHSAITSFDWAEFDTNLIASSSVDTTCTIWDIERE-------VMNAQLVA 177
+++L+G+ + ++ +NL+AS + D IWD+ + ++ A
Sbjct: 111 ENALVGHLSVHKGPVRGLEFNAISSNLLASGADDGEICIWDLLKPSEPSHFPLLKGSGSA 170
Query: 178 HDKEVYDISWGGF--NVFASVSGDGSVRVFDLRDKEKSTIIYENPV-QDCPLLRLEWNKS 234
E+ ISW + AS S +G+ ++DLR K+K I + + V + C +L+ N +
Sbjct: 171 TQGEISFISWNRKVQQILASTSYNGTTVIWDLR-KQKPIINFADSVRRRCSVLQWNPNVT 229
Query: 235 DARFMATVGINSNKVVILDIRLPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATAL 294
+A+ +S + + D+R +P+ E + H+ V A+ W P L + + D +
Sbjct: 230 TQIMVASDDDSSPTLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTI 289
Query: 295 IWEV 298
W+
Sbjct: 290 CWDT 293
>AT3G63460.3 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr3:23431009-23437241 REVERSE
LENGTH=1094
Length = 1094
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 11/184 (5%)
Query: 125 KSSLIGNKVSDHSAITSFDWAEFDTNLIASSSVDTTCTIWDIERE-------VMNAQLVA 177
+++L+G+ + ++ +NL+AS + D IWD+ + ++ A
Sbjct: 111 ENALVGHLSVHKGPVRGLEFNAISSNLLASGADDGEICIWDLLKPSEPSHFPLLKGSGSA 170
Query: 178 HDKEVYDISWGGF--NVFASVSGDGSVRVFDLRDKEKSTIIYENPV-QDCPLLRLEWNKS 234
E+ ISW + AS S +G+ ++DLR K+K I + + V + C +L+ N +
Sbjct: 171 TQGEISFISWNRKVQQILASTSYNGTTVIWDLR-KQKPIINFADSVRRRCSVLQWNPNVT 229
Query: 235 DARFMATVGINSNKVVILDIRLPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATAL 294
+A+ +S + + D+R +P+ E + H+ V A+ W P L + + D +
Sbjct: 230 TQIMVASDDDSSPTLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTI 289
Query: 295 IWEV 298
W+
Sbjct: 290 CWDT 293
>AT3G63460.2 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr3:23431009-23437241 REVERSE
LENGTH=1102
Length = 1102
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 11/184 (5%)
Query: 125 KSSLIGNKVSDHSAITSFDWAEFDTNLIASSSVDTTCTIWDIERE-------VMNAQLVA 177
+++L+G+ + ++ +NL+AS + D IWD+ + ++ A
Sbjct: 111 ENALVGHLSVHKGPVRGLEFNAISSNLLASGADDGEICIWDLLKPSEPSHFPLLKGSGSA 170
Query: 178 HDKEVYDISWGGF--NVFASVSGDGSVRVFDLRDKEKSTIIYENPV-QDCPLLRLEWNKS 234
E+ ISW + AS S +G+ ++DLR K+K I + + V + C +L+ N +
Sbjct: 171 TQGEISFISWNRKVQQILASTSYNGTTVIWDLR-KQKPIINFADSVRRRCSVLQWNPNVT 229
Query: 235 DARFMATVGINSNKVVILDIRLPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATAL 294
+A+ +S + + D+R +P+ E + H+ V A+ W P L + + D +
Sbjct: 230 TQIMVASDDDSSPTLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTI 289
Query: 295 IWEV 298
W+
Sbjct: 290 CWDT 293
>AT5G67320.1 | Symbols: HOS15 | WD-40 repeat family protein |
chr5:26857268-26860974 FORWARD LENGTH=613
Length = 613
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 119/276 (43%), Gaps = 45/276 (16%)
Query: 76 TDPRLILDHPYAPTNTMFFPSEDTTNPDLIATSGDII-RLWEIQEDKIQLK------SSL 128
+D R++ H + PS L + SGD R+W I E + ++L
Sbjct: 256 SDVRILEGHTSEVCACAWSPSASL----LASGSGDATARIWSIPEGSFKAVHTGRNINAL 311
Query: 129 I-----GNKVSDHSAITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVY 183
I G +T+ DW T L+A+ S D IW + E++ + L H ++
Sbjct: 312 ILKHAKGKSNEKSKDVTTLDWNGEGT-LLATGSCDGQARIWTLNGELI-STLSKHKGPIF 369
Query: 184 DISW---GGFNVFASVSGDGSVRVFDLRDKE-KSTIIYENPVQDCPLLRLEWNKSDARFM 239
+ W G + + SV D + V+D++ +E K + + P L ++W +++ F
Sbjct: 370 SLKWNKKGDYLLTGSV--DRTAVVWDVKAEEWKQQFEFHSG----PTLDVDW-RNNVSFA 422
Query: 240 ATVGINSNKVVILDIRLPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEVV 299
+ +++ ++ L T P + H+ VN V W P G L S SDD+TA IW +
Sbjct: 423 TS---STDSMIYLCKIGETRPAKTFTGHQGEVNCVKWDP-TGSLLASCSDDSTAKIWNIK 478
Query: 300 DPPGYGSTVIGGEVVEPAMWYGSPAEINHVRWSPVG 335
ST + ++ E EI +RWSP G
Sbjct: 479 Q-----STFV-HDLREHT------KEIYTIRWSPTG 502
>AT5G27945.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:9976007-9977601 FORWARD LENGTH=428
Length = 428
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 92/227 (40%), Gaps = 26/227 (11%)
Query: 116 EIQEDKIQLKSSLIGNKVSDHSAITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMN--- 172
+I + ++++SS+IG V + W+E L AS D IWD N
Sbjct: 216 KIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKL-ASGGNDNVVHIWDRSLASSNPTR 274
Query: 173 ---AQLVAHDKEVYDISWGGFNVFASVS----GDGSVRVFDLRDKEKSTIIYENPVQDCP 225
+ H V ++W F + GDG + ++ + E Q C
Sbjct: 275 QWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSV-ETGSQVCS 333
Query: 226 LLRLEWNKSDARFMATVGINSNKVVILDIRLPT-TPLMELSKHRTCVNAVSWSPGYGRNL 284
LL W+KS+ ++ G N++ + + P+ + EL+ H + V ++ SP G +
Sbjct: 334 LL---WSKSERELLSAHGFTQNQLTLW--KYPSMVKMAELNGHTSRVLFMAQSPD-GCTV 387
Query: 285 CSVSDDATALIWEVV-DPPGYGSTVIGGEVVEPAMWYGSPAEINHVR 330
S + D T +W V +PP + EP A +NH+R
Sbjct: 388 ASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPF------AHVNHIR 428
>AT2G32950.1 | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 |
Transducin/WD40 repeat-like superfamily protein |
chr2:13978000-13983282 FORWARD LENGTH=675
Length = 675
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 9/171 (5%)
Query: 132 KVSDHSAITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVY--DISWGG 189
++S S ++ W + + N IASS + T+WD+ + H+K + D S
Sbjct: 416 EMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTE 475
Query: 190 FNVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKV 249
++ S S D V+V+ R +E S I + C +++N + ++A VG + +
Sbjct: 476 PSMLVSGSDDCKVKVWCTR-QEASVINIDMKANICC---VKYNPGSSNYIA-VGSADHHI 530
Query: 250 VILDIRLPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEVVD 300
D+R + PL S H+ V+ V + L S S D+T +W+V D
Sbjct: 531 HYYDLRNISQPLHVFSGHKKAVSYVKFLS--NNELASASTDSTLRLWDVKD 579
>AT2G19540.1 | Symbols: | Transducin family protein / WD-40 repeat
family protein | chr2:8461804-8464347 FORWARD LENGTH=469
Length = 469
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 137 SAITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNA-QLVAHDKEVYDISWGGFN--VF 193
+++ W+ + N+ AS SVD + +WDI A AH+ +V ISW +
Sbjct: 270 ASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVNVISWNRLASCML 329
Query: 194 ASVSGDGSVRVFDLR-DKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKVVIL 252
AS S DG+ + DLR K ++ P+ +EW+ +A +A V N++ I
Sbjct: 330 ASGSDDGTFSIRDLRLIKGGDAVVAHFEYHKHPITSIEWSAHEASTLA-VTSGDNQLTIW 388
Query: 253 DIRL 256
D+ L
Sbjct: 389 DLSL 392
>AT1G53090.2 | Symbols: SPA4 | SPA1-related 4 |
chr1:19783748-19786690 FORWARD LENGTH=794
Length = 794
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 132 KVSDHSAITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVYDISWGGFN 191
+++ S ++ W + + +ASS+ + +WD+ R + ++ H+K V+ I + +
Sbjct: 529 ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSAD 588
Query: 192 --VFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKV 249
+ AS S DGSV+++ + I C E +S A G +KV
Sbjct: 589 PTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSETGRSLA-----FGSADHKV 643
Query: 250 VILDIRLPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEV 298
D+R P PL + H V+ V + L S S D T +W++
Sbjct: 644 YYYDLRNPKLPLCTMIGHHKTVSYVRFVD--SSTLVSSSTDNTLKLWDL 690
>AT1G53090.1 | Symbols: SPA4 | SPA1-related 4 |
chr1:19783748-19786690 FORWARD LENGTH=794
Length = 794
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 132 KVSDHSAITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVYDISWGGFN 191
+++ S ++ W + + +ASS+ + +WD+ R + ++ H+K V+ I + +
Sbjct: 529 ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSAD 588
Query: 192 --VFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKV 249
+ AS S DGSV+++ + I C E +S A G +KV
Sbjct: 589 PTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSETGRSLA-----FGSADHKV 643
Query: 250 VILDIRLPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEV 298
D+R P PL + H V+ V + L S S D T +W++
Sbjct: 644 YYYDLRNPKLPLCTMIGHHKTVSYVRFVD--SSTLVSSSTDNTLKLWDL 690