Miyakogusa Predicted Gene
- Lj1g3v4717500.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4717500.2 Non Chatacterized Hit- tr|B9FQY8|B9FQY8_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,40.51,3e-17,seg,NULL; RNA recognition motif,RNA recognition
motif domain, eukaryote; RNA recognition motif,RNA r,CUFF.33106.2
(955 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 399 e-111
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 399 e-111
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 367 e-101
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 367 e-101
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 351 1e-96
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 350 4e-96
AT5G40820.1 | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectasi... 277 3e-74
AT5G28390.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 152 1e-36
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 115 1e-25
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 92 2e-18
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 85 2e-16
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 85 2e-16
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 82 1e-15
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 79 2e-14
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 76 9e-14
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 76 9e-14
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 76 9e-14
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 72 2e-12
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 72 2e-12
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 71 4e-12
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 5e-11
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 1e-10
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 66 1e-10
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 2e-10
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 3e-10
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 3e-10
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 62 2e-09
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 2e-09
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 2e-09
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 62 2e-09
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 61 3e-09
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 61 3e-09
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 60 7e-09
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 60 9e-09
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-08
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 59 2e-08
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 59 2e-08
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 59 2e-08
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 58 3e-08
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 58 3e-08
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 4e-08
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 58 4e-08
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 58 4e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 5e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 5e-08
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 6e-08
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 6e-08
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 1e-07
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 56 1e-07
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 56 1e-07
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-07
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 55 2e-07
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 55 3e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 54 4e-07
AT1G29400.2 | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10... 54 4e-07
AT1G29400.1 | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10... 54 4e-07
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 54 5e-07
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 6e-07
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 6e-07
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 6e-07
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 7e-07
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 7e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 54 7e-07
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 54 7e-07
AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-bindi... 53 8e-07
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 1e-06
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 1e-06
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 1e-06
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 1e-06
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 1e-06
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 52 2e-06
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-06
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-06
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-06
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 3e-06
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 3e-06
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 3e-06
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 3e-06
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 4e-06
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 4e-06
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 4e-06
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 6e-06
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 6e-06
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 7e-06
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 9e-06
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 184/293 (62%), Positives = 240/293 (81%), Gaps = 4/293 (1%)
Query: 186 KKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAF 245
KK+H ELLALPPH SEVY+GGI + +E DL+ FC S+GEV+EVRIM+ K+SG+ KGYAF
Sbjct: 78 KKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAF 137
Query: 246 VAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGP 305
V F++K+LA++AI+ LNN++F+GK+IKCS++QAKHRLF+GN+P+ W D+KK +GP
Sbjct: 138 VTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGP 197
Query: 306 GVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE--PR 363
GV +EL K+ Q+ GRNRGFAFIEYYNHACAEYS+QKMSN +FKL++NAPTVSWAE
Sbjct: 198 GVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSG 257
Query: 364 NSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFS 423
S+ SQVKA+Y+KNLP +ITQ+ LK LFEHHGKI KVV+PPAK G+E SR+GFVH++
Sbjct: 258 GGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYA 317
Query: 424 DRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTS--NSQKPVVLPTYP 474
+R+S M+ALKNTE+YEIDG L+C+LAKP+ADQ+++ + N QK + P YP
Sbjct: 318 ERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYP 370
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 184/293 (62%), Positives = 240/293 (81%), Gaps = 4/293 (1%)
Query: 186 KKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAF 245
KK+H ELLALPPH SEVY+GGI + +E DL+ FC S+GEV+EVRIM+ K+SG+ KGYAF
Sbjct: 78 KKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAF 137
Query: 246 VAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGP 305
V F++K+LA++AI+ LNN++F+GK+IKCS++QAKHRLF+GN+P+ W D+KK +GP
Sbjct: 138 VTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGP 197
Query: 306 GVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE--PR 363
GV +EL K+ Q+ GRNRGFAFIEYYNHACAEYS+QKMSN +FKL++NAPTVSWAE
Sbjct: 198 GVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSG 257
Query: 364 NSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFS 423
S+ SQVKA+Y+KNLP +ITQ+ LK LFEHHGKI KVV+PPAK G+E SR+GFVH++
Sbjct: 258 GGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYA 317
Query: 424 DRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTS--NSQKPVVLPTYP 474
+R+S M+ALKNTE+YEIDG L+C+LAKP+ADQ+++ + N QK + P YP
Sbjct: 318 ERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYP 370
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/300 (57%), Positives = 241/300 (80%), Gaps = 10/300 (3%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
D+ +++K++ LL+LPPH SEV+IGG+ +V EEDLR C+ +GE+ EVR+MK ++SG+ K
Sbjct: 98 DDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSK 157
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
GYAFVAFKTK++A +AIEEL++ EFKGK I+CS S+ K+RLFIGNIPK WT ++ +KV+
Sbjct: 158 GYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIE 217
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
DVGPGV +IEL+KD ++ RNRGFAF+ YYN+ACA+YSRQKM +SNFKLE NAPTV+WA+
Sbjct: 218 DVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWAD 277
Query: 362 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 419
P++S S+A +QVKA+YVKN+PEN + + LK+LF+ HG++TK+V PP K G K FGF
Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGF 335
Query: 420 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQR------SSGTSNSQKPVVLPTY 473
VH+++RSSA+KA+K+TE+YE++G+ LE LAKP+A+++ S G + + P V PT+
Sbjct: 336 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 395
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/300 (57%), Positives = 241/300 (80%), Gaps = 10/300 (3%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
D+ +++K++ LL+LPPH SEV+IGG+ +V EEDLR C+ +GE+ EVR+MK ++SG+ K
Sbjct: 98 DDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSK 157
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
GYAFVAFKTK++A +AIEEL++ EFKGK I+CS S+ K+RLFIGNIPK WT ++ +KV+
Sbjct: 158 GYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIE 217
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
DVGPGV +IEL+KD ++ RNRGFAF+ YYN+ACA+YSRQKM +SNFKLE NAPTV+WA+
Sbjct: 218 DVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWAD 277
Query: 362 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 419
P++S S+A +QVKA+YVKN+PEN + + LK+LF+ HG++TK+V PP K G K FGF
Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGF 335
Query: 420 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQR------SSGTSNSQKPVVLPTY 473
VH+++RSSA+KA+K+TE+YE++G+ LE LAKP+A+++ S G + + P V PT+
Sbjct: 336 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 395
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 351 bits (901), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 167/300 (55%), Positives = 234/300 (78%), Gaps = 18/300 (6%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
D+ +++K++ LL+LPPH SEV+IGG+ +V EEDLR C+ +GE+ EVR+MK ++SG+ K
Sbjct: 78 DDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSK 137
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
GYAFVAFKTK++A +AIEEL++ EFKGK I+CS S+ K+RLFIGNIPK WT ++ +KV+
Sbjct: 138 GYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIE 197
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
DVGPG D ++ RNRGFAF+ YYN+ACA+YSRQKM +SNFKLE NAPTV+WA+
Sbjct: 198 DVGPG--------DPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWAD 249
Query: 362 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 419
P++S S+A +QVKA+YVKN+PEN + + LK+LF+ HG++TK+V PP K G K FGF
Sbjct: 250 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGF 307
Query: 420 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQR------SSGTSNSQKPVVLPTY 473
VH+++RSSA+KA+K+TE+YE++G+ LE LAKP+A+++ S G + + P V PT+
Sbjct: 308 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 367
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 350 bits (897), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 166/300 (55%), Positives = 233/300 (77%), Gaps = 10/300 (3%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
D+ +++K++ LL+LPPH SEV+IGG+ +V EEDLR C+ +GE+ EVR+MK ++SG+ K
Sbjct: 98 DDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSK 157
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
GYAFVAFKTK++A +AIEEL++ EFK S +RLFIGNIPK WT ++ +KV+
Sbjct: 158 GYAFVAFKTKDVAQKAIEELHSKEFKASSTANCSLSLSNRLFIGNIPKNWTEDEFRKVIE 217
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
DVGPGV +IEL+KD ++ RNRGFAF+ YYN+ACA+YSRQKM +SNFKLE NAPTV+WA+
Sbjct: 218 DVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWAD 277
Query: 362 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 419
P++S S+A +QVKA+YVKN+PEN + + LK+LF+ HG++TK+V PP K G K FGF
Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGF 335
Query: 420 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQR------SSGTSNSQKPVVLPTY 473
VH+++RSSA+KA+K+TE+YE++G+ LE LAKP+A+++ S G + + P V PT+
Sbjct: 336 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 395
>AT5G40820.1 | Symbols: ATRAD3, ATR, ATATR | Ataxia
telangiectasia-mutated and RAD3-related |
chr5:16343860-16353847 REVERSE LENGTH=2702
Length = 2702
Score = 277 bits (708), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 199/307 (64%), Gaps = 13/307 (4%)
Query: 505 GMEVRFCTVLPNLLHAYVVPSSSGNNDREVIAVVKLISHTARNFPGVFFLGKPSAVLPVL 564
+E+RF V+PNLL+ YVVPS N REV AV+KL+ HTARN PGVF+ G PSA+LPV+
Sbjct: 39 ALEIRFRAVIPNLLNTYVVPSL--GNGREVTAVLKLVGHTARNIPGVFYHGTPSAILPVI 96
Query: 565 ADILPSYADPLFRSRHRVFFEALGSLLSLFRSGARDASTHFFLDPMLLILDTLDVNAPFS 624
A I+P +A+P F H V E +GSLL L RS +R A FF D + I D + + S
Sbjct: 97 ARIIPFFAEPEFVPGHGVLLETVGSLLMLLRSNSRKAYRIFFHDALQAIQDMQPIASLHS 156
Query: 625 LT---------FNCFPKSFNGIE-DNPSTNKPVDGCGLLVDISDQSRWLPFATYTLKLLS 674
+ F CF SF+GI D P NKP DG GL++++ +RW PFAT LKL+
Sbjct: 157 IEPEVCESHIPFRCFCMSFSGIGGDLPDANKPRDGDGLVLNLLGANRWQPFATCILKLIC 216
Query: 675 KCMTEGTLYVEGLIRSSFVSAACCFLCYRDTDLHMACLDFLHIIATVINYDIIPYQNLIR 734
KC+TEGTLYV+GLI +SF AAC +C D+ MAC +F ++ +++ ++I+P+ LI+
Sbjct: 217 KCLTEGTLYVQGLIHTSFFKAACSLVCCGGADVQMACFEFATLVGSILTFNILPHVALIQ 276
Query: 735 SIATILSLEKEGLPVFRNTAYDSWIVVCLNALYSICPEDIVKLTASDLVSVFFQSMWRTK 794
SI +LS + EGLPV+RNT YDS I L A+YS C + VKLTA LV V ++ RTK
Sbjct: 277 SIILLLSAD-EGLPVYRNTIYDSTIGRFLTAVYSSCSDAAVKLTAESLVLVLSHALQRTK 335
Query: 795 SQQLKVN 801
S++LK +
Sbjct: 336 SEELKAS 342
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 100/151 (66%), Gaps = 12/151 (7%)
Query: 36 MAKA--NLSSL----PERIAASSSTLTPN--NPSGE--ALEVRFCTVLPNLLHAYVVPSS 85
MAK NLSSL ER+AAS+ST N + SG+ ALE+RF V+PNLL+ YVVPS
Sbjct: 1 MAKDDNNLSSLVHELRERVAASASTPANNLRHSSGDEDALEIRFRAVIPNLLNTYVVPS- 59
Query: 86 SRNNDREVIAVVKLISHTARNFPGVFFLGKPSAVLPVLADILPSYADPLFRSRHRVFFEA 145
N REV AV+KL+ HTARN PGVF+ G PSA+LPV+A I+P +A+P F H V E
Sbjct: 60 -LGNGREVTAVLKLVGHTARNIPGVFYHGTPSAILPVIARIIPFFAEPEFVPGHGVLLET 118
Query: 146 LGSLLSLFRSGARDASTHFFLDPMLLILEMR 176
+GSLL L RS +R A FF D + I +M+
Sbjct: 119 VGSLLMLLRSNSRKAYRIFFHDALQAIQDMQ 149
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 85/151 (56%), Gaps = 10/151 (6%)
Query: 815 FPSVFCHGKPTAVLPVLAEILSFYADPLFRSRHIVFFEXXXXXXXXXXXXXXDAYGHFFL 874
P VF HG P+A+LPV+A I+ F+A+P F H V E AY FF
Sbjct: 80 IPGVFYHGTPSAILPVIARIIPFFAEPEFVPGHGVLLETVGSLLMLLRSNSRKAYRIFFH 139
Query: 875 DSMLLILDTLDVNA---------PSSLTFKCFPKSFNGIE-DIPSINKLVDGCGLLVDIS 924
D++ I D + + S + F+CF SF+GI D+P NK DG GL++++
Sbjct: 140 DALQAIQDMQPIASLHSIEPEVCESHIPFRCFCMSFSGIGGDLPDANKPRDGDGLVLNLL 199
Query: 925 DQSRWLPFATYTLKLLSKCMTDGTLYVEGLI 955
+RW PFAT LKL+ KC+T+GTLYV+GLI
Sbjct: 200 GANRWQPFATCILKLICKCLTEGTLYVQGLI 230
>AT5G28390.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:10342024-10342997 REVERSE LENGTH=180
Length = 180
Score = 152 bits (383), Expect = 1e-36, Method: Composition-based stats.
Identities = 75/131 (57%), Positives = 97/131 (74%), Gaps = 5/131 (3%)
Query: 343 MSNSNFKLENNAPTVSWAEPRN--SESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKI 400
MSN +FKL++NAPTVSWAE R+ S+ SQVKA+Y+KNLP +ITQ+ LK LFEHHGKI
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 401 TKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSG 460
KVV+PPAK G+E SR+GFVH+++R+S M+ALKNTE+YEID L A ++G
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDASAYSQPLM--HAGGHAAG 118
Query: 461 TSNSQKPVVLP 471
S P++LP
Sbjct: 119 -GMSMMPIMLP 128
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 158/291 (54%), Gaps = 12/291 (4%)
Query: 172 ILEMRFNHTNDEVEKKKHAELLALPPHSSE--VYIGGIANNVSEEDLRVFCQSVGEVSEV 229
I E++ T D VE+++H ++L E +++G + SEEDL+ VGEV+EV
Sbjct: 185 IEEVKHGETVD-VEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEV 243
Query: 230 RIMKAKESGERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPK 289
RI+K ++ + KG AF+ F T E A +A++EL + GKK ++SQ LF+GNI K
Sbjct: 244 RILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICK 303
Query: 290 KWTVEDMKKVVADVG-PGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSN- 347
WT E +++ + G + I L++D + NRG+AF+E+ + + A + +++ +
Sbjct: 304 IWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDV 363
Query: 348 -FKLENNAPTVSWAEP-RNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVL 405
F +E A VS+ + + E ++QVK +++ L + ++ ++ L + +GK+ KV L
Sbjct: 364 MFGVEKPA-KVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVEL 422
Query: 406 PPAKSGQEKSRFGFVHFSDRSSAM---KALKNTEKYEIDGK-NLECSLAKP 452
+ FGFV F +A+ K + N+E E + K + L++P
Sbjct: 423 ARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRP 473
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 136/274 (49%), Gaps = 24/274 (8%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
++ +Y+G + NV++ L +G V VR+ + + GY +V F + A++AI
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 259 EELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVADVGPGVISI 310
+ELN GK I+ S +FI N+ + + + + G ++S
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIVSC 153
Query: 311 ELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEP---RNSES 367
++ D SSG+++G+ F++Y N A+ + +K+ N L N+ + P R
Sbjct: 154 KVAVD--SSGQSKGYGFVQYANEESAQKAIEKL---NGMLLNDKQV--YVGPFLRRQERD 206
Query: 368 SAVSQVK--AVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR-FGFVHFSD 424
S ++ K VYVKNL E+ T D LK F +GKIT V+ K G+ KS+ FGFV+F +
Sbjct: 207 STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGEGKSKGFGFVNFEN 264
Query: 425 RSSAMKALKNTEKYEIDGKNLECSLAKPEADQRS 458
A +A+++ ++ D K A+ ++++ +
Sbjct: 265 ADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 32/247 (12%)
Query: 237 SGERKGYAFVAFKTKELASQAIEELNNSEFKGKKI---------KCSSSQAKHR---LFI 284
SG+ KGY FV + +E A +AIE+LN K++ + S+ K + +++
Sbjct: 160 SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYV 219
Query: 285 GNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMS 344
N+ + T +D+K + G + S ++KD G+++GF F+ + N A + + ++
Sbjct: 220 KNLAESTTDDDLKNAFGEYGK-ITSAVVMKD--GEGKSKGFGFVNFENADDAARAVESLN 276
Query: 345 NSNF------------KLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKK 392
F K E E E++ Q +YVKNL +I+ + LK+
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 393 LFEHHGKIT--KVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLA 450
+F G +T KV+ P +G K GFV F+ A +A+ I+ K L ++A
Sbjct: 337 IFSPFGTVTSSKVMRDP--NGTSKGS-GFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393
Query: 451 KPEADQR 457
+ + D+R
Sbjct: 394 QRKEDRR 400
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 129/271 (47%), Gaps = 21/271 (7%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
+S +Y+G + +V+E L V V +R+ + + GYA+V F E AS+A+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCR-DLTHRSLGYAYVNFANPEDASRAM 116
Query: 259 EELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVADVGPGVISI 310
E LN + + + I+ S K +FI N+ + + + + G ++S
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT-ILSC 175
Query: 311 ELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPT-----VSWAEPRNS 365
++ D+ GR++G+ F+++ A+ + K+ N L N+ V + S
Sbjct: 176 KVAMDV--VGRSKGYGFVQFEKEETAQAAIDKL---NGMLLNDKQVFVGHFVRRQDRARS 230
Query: 366 ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDR 425
ES AV VYVKNLP+ IT D LKK F +G I+ V+ +SG +S FGFV+F
Sbjct: 231 ESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSP 289
Query: 426 SSAMKALKNTEKYEIDGKNLECSLAKPEADQ 456
+A A++ + L A+ ++D+
Sbjct: 290 EAAAVAVEKMNGISLGEDVLYVGRAQKKSDR 320
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 40/252 (15%)
Query: 238 GERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCS---SSQAKHR-----------LF 283
G KGY FV F+ +E A AI++LN K++ Q + R ++
Sbjct: 183 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVY 242
Query: 284 IGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKM 343
+ N+PK+ T +++KK G + S ++KD SG +R F F+ + + A + +KM
Sbjct: 243 VKNLPKEITDDELKKTFGKYG-DISSAVVMKD--QSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 344 SNSNFKLENNAPTVSWAEPRNS---------ESSAVS-----QVKAVYVKNLPENITQDS 389
+ L + V A+ ++ E +S Q +Y+KNL +++ +
Sbjct: 300 NG--ISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 390 LKKLFEHHGKIT--KVVLPPAKSGQEKSR-FGFVHFSDRSSAMKALKNTEKYEIDGKNLE 446
LK++F +G +T KV++ + Q SR FGFV +S+ A+ A+K I K L
Sbjct: 358 LKEMFSEYGNVTSCKVMM----NSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLY 413
Query: 447 CSLAKPEADQRS 458
+LA+ + ++++
Sbjct: 414 VALAQRKEERQA 425
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 129/271 (47%), Gaps = 21/271 (7%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
+S +Y+G + +V+E L V V +R+ + + GYA+V F E AS+A+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCR-DLTHRSLGYAYVNFANPEDASRAM 116
Query: 259 EELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVADVGPGVISI 310
E LN + + + I+ S K +FI N+ + + + + G ++S
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT-ILSC 175
Query: 311 ELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPT-----VSWAEPRNS 365
++ D+ GR++G+ F+++ A+ + K+ N L N+ V + S
Sbjct: 176 KVAMDV--VGRSKGYGFVQFEKEETAQAAIDKL---NGMLLNDKQVFVGHFVRRQDRARS 230
Query: 366 ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDR 425
ES AV VYVKNLP+ IT D LKK F +G I+ V+ +SG +S FGFV+F
Sbjct: 231 ESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSP 289
Query: 426 SSAMKALKNTEKYEIDGKNLECSLAKPEADQ 456
+A A++ + L A+ ++D+
Sbjct: 290 EAAAVAVEKMNGISLGEDVLYVGRAQKKSDR 320
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 40/252 (15%)
Query: 238 GERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCS---SSQAKHR-----------LF 283
G KGY FV F+ +E A AI++LN K++ Q + R ++
Sbjct: 183 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVY 242
Query: 284 IGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKM 343
+ N+PK+ T +++KK G + S ++KD SG +R F F+ + + A + +KM
Sbjct: 243 VKNLPKEITDDELKKTFGKYG-DISSAVVMKD--QSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 344 SNSNFKLENNAPTVSWAEPRNS---------ESSAVS-----QVKAVYVKNLPENITQDS 389
+ L + V A+ ++ E +S Q +Y+KNL +++ +
Sbjct: 300 NG--ISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 390 LKKLFEHHGKIT--KVVLPPAKSGQEKSR-FGFVHFSDRSSAMKALKNTEKYEIDGKNLE 446
LK++F +G +T KV++ + Q SR FGFV +S+ A+ A+K I K L
Sbjct: 358 LKEMFSEYGNVTSCKVMM----NSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLY 413
Query: 447 CSLAKPEADQRS 458
+LA+ + ++++
Sbjct: 414 VALAQRKEERQA 425
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 128/267 (47%), Gaps = 20/267 (7%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
+Y+G + NV++ L + V +V VR+ + + GY +V + + A +A+++L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 262 NNSEFKGKKIKCS--------SSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELL 313
N S GK I+ + LF+ N+ K + + + + G ++S ++
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT-IVSCKVA 166
Query: 314 KDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSE-SSAVSQ 372
D G++RG+ F+++ A+ + +K+ N K+ N+ R E SA +
Sbjct: 167 TD--HMGQSRGYGFVQFDTEDSAKNAIEKL---NGKVLNDKQIFVGPFLRKEERESAADK 221
Query: 373 VK--AVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR-FGFVHFSDRSSAM 429
+K VYVKNL E T D LK F +G I+ V+ + G KSR FGFV+F + A
Sbjct: 222 MKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVV--MRDGDGKSRCFGFVNFENPEDAA 279
Query: 430 KALKNTEKYEIDGKNLECSLAKPEADQ 456
+A++ + D K A+ ++++
Sbjct: 280 RAVEALNGKKFDDKEWYVGKAQKKSER 306
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 114/266 (42%), Gaps = 30/266 (11%)
Query: 238 GERKGYAFVAFKTKELASQAIEELNNSEFKGKKI-------KCSSSQAKHRL-----FIG 285
G+ +GY FV F T++ A AIE+LN K+I K A ++ ++
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVK 230
Query: 286 NIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSN 345
N+ + T +++K G + S +++D G++R F F+ + N A + + ++
Sbjct: 231 NLSEATTDDELKTTFGQYG-SISSAVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNG 287
Query: 346 SNF------------KLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKL 393
F K E E +S+ +YVKNL + +T + L++L
Sbjct: 288 KKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLREL 347
Query: 394 FEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPE 453
F G IT + SG K GFV FS S A + L + GK L +LA+ +
Sbjct: 348 FAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 454 ADQRS--SGTSNSQKPVVLPTYPHRL 477
++R+ + +P +P R+
Sbjct: 407 EERRAKLQAQFSQMRPAFIPGVGPRM 432
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 142/295 (48%), Gaps = 39/295 (13%)
Query: 187 KKHAELLALPPHSSE---VYIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGERKG 242
K + L HSS +Y+G ++ +V+E+DL F +V VS V + + +G+
Sbjct: 5 KTETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVS-VHLCRNSVTGKSMC 63
Query: 243 YAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQ---AKHR--------LFIGNIPKKW 291
YA++ F + AS A+ LN+S+ KGK ++ SQ A R L++ N+
Sbjct: 64 YAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSI 123
Query: 292 TVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF--- 348
T ++++ G SI K ++ +G+++GF F+++ A +R + S
Sbjct: 124 TSSCLERMFCPFG----SILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGK 179
Query: 349 -----KLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKV 403
K N + A ++S + VYVKNL E +T D L LF +G ++ V
Sbjct: 180 KLFVAKFINKDERAAMAGNQDSTN--------VYVKNLIETVTDDCLHTLFSQYGTVSSV 231
Query: 404 VLPPAKSGQEKSR-FGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQR 457
V+ + G +SR FGFV+F + +A KA+++ ++ K L A + ++R
Sbjct: 232 VV--MRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERR 284
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 136/283 (48%), Gaps = 35/283 (12%)
Query: 200 SEVYIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
+ +Y+ + ++++ L R+FC G + ++++ E+G+ KG+ FV F T++ A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFC-PFGSILSCKVVE--ENGQSKGFGFVQFDTEQSAVSAR 168
Query: 259 EELNNSEFKGKKI------------KCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPG 306
L+ S GKK+ + +Q +++ N+ + T + + + + G
Sbjct: 169 SALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT- 227
Query: 307 VISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSE 366
V S+ +++D GR+RGF F+ + N A+ + + + +L + V A ++
Sbjct: 228 VSSVVVMRD--GMGRSRGFGFVNFCNPENAKKAMESLCG--LQLGSKKLFVGKALKKDER 283
Query: 367 SSAVSQV-------------KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQE 413
+ Q +YVKNL E++ + L+++F +G+I + ++G+
Sbjct: 284 REMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRS 343
Query: 414 KSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQ 456
K FGFV FS+ + +A + + +DGK + +A+ + D+
Sbjct: 344 KG-FGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR 385
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 40/253 (15%)
Query: 237 SGERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCS---SSQAKHR-----------L 282
+G KGY FV F+ +E A AI++LN K++ Q + R +
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231
Query: 283 FIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQK 342
++ N+PK+ ++++K G VIS ++ QS G +R F F+ + A + +K
Sbjct: 232 YVKNLPKEIGEDELRKTFGKFG--VISSAVVMRDQS-GNSRCFGFVNFECTEAAASAVEK 288
Query: 343 MSNSNFKLENNAPTVSWAEPRNSESSAV--------------SQVKAVYVKNLPENITQD 388
M+ L ++ V A+ ++ + SQ +Y+KNL +++ +
Sbjct: 289 MNG--ISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDE 346
Query: 389 SLKKLFEHHGKIT--KVVLPPAKSGQEKSR-FGFVHFSDRSSAMKALKNTEKYEIDGKNL 445
LK++F +G +T KV+L P Q SR FGFV +S+ A++AL I K L
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNP----QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 402
Query: 446 ECSLAKPEADQRS 458
+LA+ + D+R+
Sbjct: 403 YIALAQRKEDRRA 415
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 21/248 (8%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
+S +Y G + V+E L + V V VR+ + ++ GYA++ F A +A+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCR-DQNRRSLGYAYINFSNPNDAYRAM 106
Query: 259 EELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVADVGPGVISI 310
E LN + + I+ S K +FI N+ + + + + G ++S
Sbjct: 107 EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGT-ILSC 165
Query: 311 ELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPT-----VSWAEPRNS 365
++ D+ +GR++G+ F+++ A+ + K+ N L N+ + E
Sbjct: 166 KVAMDV--TGRSKGYGFVQFEKEESAQAAIDKL---NGMLMNDKQVFVGHFIRRQERARD 220
Query: 366 ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDR 425
E++ + VYVKNLP+ I +D L+K F G I+ V+ +SG + FGFV+F
Sbjct: 221 ENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRC-FGFVNFECT 279
Query: 426 SSAMKALK 433
+A A++
Sbjct: 280 EAAASAVE 287
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 131/272 (48%), Gaps = 20/272 (7%)
Query: 199 SSEVYIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQA 257
++ +Y+G + V++ L F Q+ G+V VR+ + + GY +V + T + AS+A
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQA-GQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 258 IEELNNSEFKGKKIKCSSS--------QAKHRLFIGNIPKKWTVEDMKKVVADVGPGVIS 309
+ ELN G+ I+ S +FI N+ K + + + + GP ++S
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILS 161
Query: 310 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNS--NFKLENNAPTVSWAEPRNSES 367
++ D SG+++G+ F++Y A+ + K++ N K P V + R+
Sbjct: 162 CKVAVD--PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQ-RDPSG 218
Query: 368 SAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR-FGFVHFSDRS 426
V + VYVKNL E+++ + L K+F G T V+ + G+ KS+ FGFV+F +
Sbjct: 219 EKV-KFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI--MRDGEGKSKGFGFVNFENSD 275
Query: 427 SAMKALKNTEKYEIDGKNLECSLAKPEADQRS 458
A +A+ D K A+ ++++ +
Sbjct: 276 DAARAVDALNGKTFDDKEWFVGKAQKKSERET 307
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 34/263 (12%)
Query: 237 SGERKGYAFVAFKTKELASQAIEELNNSEFKGK---------KIKCSSSQAKHR---LFI 284
SG+ KGY FV + T E A AI++LN K K++ S K + +++
Sbjct: 169 SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYV 228
Query: 285 GNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMS 344
N+ + + E++ KV + G S +++D G+++GF F+ + N A + ++
Sbjct: 229 KNLSESLSDEELNKVFGEFGV-TTSCVIMRD--GEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 345 NSNF------------KLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKK 392
F K E E E++ SQ +YVKNL E++T D L++
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 393 LFEHHGKIT--KVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLA 450
F G IT KV+ P SG + GFV FS A +A+ I K L +LA
Sbjct: 346 HFAPFGTITSCKVMRDP--SGVSRGS-GFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 451 KPEADQRS--SGTSNSQKPVVLP 471
+ + D+++ + +PV +P
Sbjct: 403 QRKEDRKARLQAQFSQMRPVNMP 425
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 131/272 (48%), Gaps = 20/272 (7%)
Query: 199 SSEVYIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQA 257
++ +Y+G + V++ L F Q+ G+V VR+ + + GY +V + T + AS+A
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQA-GQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 258 IEELNNSEFKGKKIKCSSS--------QAKHRLFIGNIPKKWTVEDMKKVVADVGPGVIS 309
+ ELN G+ I+ S +FI N+ K + + + + GP ++S
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILS 161
Query: 310 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNS--NFKLENNAPTVSWAEPRNSES 367
++ D SG+++G+ F++Y A+ + K++ N K P V + R+
Sbjct: 162 CKVAVD--PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQ-RDPSG 218
Query: 368 SAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR-FGFVHFSDRS 426
V + VYVKNL E+++ + L K+F G T V+ + G+ KS+ FGFV+F +
Sbjct: 219 EKV-KFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI--MRDGEGKSKGFGFVNFENSD 275
Query: 427 SAMKALKNTEKYEIDGKNLECSLAKPEADQRS 458
A +A+ D K A+ ++++ +
Sbjct: 276 DAARAVDALNGKTFDDKEWFVGKAQKKSERET 307
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 34/263 (12%)
Query: 237 SGERKGYAFVAFKTKELASQAIEELNNSEFKGK---------KIKCSSSQAKHR---LFI 284
SG+ KGY FV + T E A AI++LN K K++ S K + +++
Sbjct: 169 SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYV 228
Query: 285 GNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMS 344
N+ + + E++ KV + G S +++D G+++GF F+ + N A + ++
Sbjct: 229 KNLSESLSDEELNKVFGEFGV-TTSCVIMRD--GEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 345 NSNF------------KLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKK 392
F K E E E++ SQ +YVKNL E++T D L++
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 393 LFEHHGKIT--KVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLA 450
F G IT KV+ P SG + GFV FS A +A+ I K L +LA
Sbjct: 346 HFAPFGTITSCKVMRDP--SGVSRGS-GFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 451 KPEADQRS--SGTSNSQKPVVLP 471
+ + D+++ + +PV +P
Sbjct: 403 QRKEDRKARLQAQFSQMRPVNMP 425
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 126/288 (43%), Gaps = 33/288 (11%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
++IG + + E L GE+ ++++ K++G+ +GY F+ F + A + ++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 262 NNSE--------FKGKKIKCSSSQAK-----HRLFIGNIPKKWTVEDMKKVVADVGPGVI 308
NN+ F+ SS + + +F+G++ T + + P V
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 309 SIELLKDLQSSGRNRGFAFIEYYNH-----ACAEYSRQKMSNSNFKLENNAPTVSWAEPR 363
+++ D + +GR +G+ F+ + + A E + S ++ A R
Sbjct: 184 GAKVVID-RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
Query: 364 NSESSAVSQV--------KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKS 415
+S S+ + V V+V L ++T D LK +F +G+I V +P K
Sbjct: 243 DSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK------ 296
Query: 416 RFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSN 463
R GFV FS++S A +AL+ ++ G + S + ++++S S
Sbjct: 297 RCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPSQ 344
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 129/278 (46%), Gaps = 27/278 (9%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
V++ + +V+ L+ + G + ++ E G+ +GY FV F+ ++ A AI+ L
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATL-EDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 262 NNS----------EFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIE 311
N++ +F K + + L++ N+ + + +++ A+ G ++S+
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGK-IVSLA 231
Query: 312 LLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF------------KLENNAPTVSW 359
+ KD + RG+AF+ + N A + + ++ + F K E
Sbjct: 232 IAKD--ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQ 289
Query: 360 AEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 419
+ ++ E +++V +YVKN+ +T++ L+K F G IT L + G+ K FGF
Sbjct: 290 FKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKG-FGF 348
Query: 420 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQR 457
V FS A+ A+K GK L ++A+ + D++
Sbjct: 349 VCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRK 386
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 24/273 (8%)
Query: 197 PHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQ 256
P ++ +Y+G + +V+E L ++ VR+ K SG Y + F +++ A+
Sbjct: 21 PVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANL 80
Query: 257 AIEELNNSEFKGKKIKC--------SSSQAKHRLFIGNIPKKWT---VEDM-KKVVADVG 304
AIE+ NNS GK I+ + +F+ N+P+ T ++DM KK V
Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVS 140
Query: 305 PGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRN 364
V ++E G++RG+ F+++ A + Q + NS + + V +
Sbjct: 141 CKVATLE-------DGKSRGYGFVQFEQEDAAHAAIQTL-NSTI-VADKEIYVGKFMKKT 191
Query: 365 SESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR-FGFVHFS 423
+ +Y+KNL ++++D L++ F GKI V L AK R + FV+F
Sbjct: 192 DRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKI--VSLAIAKDENRLCRGYAFVNFD 249
Query: 424 DRSSAMKALKNTEKYEIDGKNLECSLAKPEADQ 456
+ A +A + + K L A+ +A++
Sbjct: 250 NPEDARRAAETVNGTKFGSKCLYVGRAQKKAER 282
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 126/287 (43%), Gaps = 35/287 (12%)
Query: 216 LRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE--------------EL 261
+ VF QS GE + ++++ K +G+ +GY F+ F + +A + ++ L
Sbjct: 77 MSVFAQS-GEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRL 135
Query: 262 NNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGR 321
N ++ + + + H +F+G++ + T + +V V +++ D +++GR
Sbjct: 136 NWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLD-RTTGR 194
Query: 322 NRGFAFIEYYNH-----ACAEYSRQKMSNSNFKL----ENNAPTVSWAEPRNSESSAVSQ 372
++G+ F+ + + A E + Q S ++ NA + A +N++ +
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGD 254
Query: 373 VK----AVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSA 428
++V L N+T D LK +F G++ V +PP K R GFV +++++SA
Sbjct: 255 NDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGK------RCGFVQYANKASA 308
Query: 429 MKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPH 475
AL ++ G+++ S + Q N P P
Sbjct: 309 EHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQPQ 355
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 18/196 (9%)
Query: 182 DEVEKKKHAELLALPPHS--SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGE 239
+E EK A + PP + +++Y G + NV L Q V ++ +++G+
Sbjct: 65 EEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQ 124
Query: 240 RKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSS------------QAKHRLFIGNI 287
+G+AFV E + I+ L+ +E+ G+ +K + + + +H+LF+GN+
Sbjct: 125 SRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNL 184
Query: 288 PKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSN 347
T E + + G V+ ++ D +GR+RG+ F+ Y + A E + + +
Sbjct: 185 SWTVTSESLAGAFRECGD-VVGARVVFD-GDTGRSRGYGFVCYSSKAEMETALESL--DG 240
Query: 348 FKLENNAPTVSWAEPR 363
F+LE A V+ A+ +
Sbjct: 241 FELEGRAIRVNLAQGK 256
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 126/290 (43%), Gaps = 51/290 (17%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
++IG + V E L GE+ V++++ K +G+ +GY F+ F + A + ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 262 NNSEFKGKKI-------KCSSSQA-----KHRLFIGNIPKKWTVEDMKKVVADVGPGVIS 309
N ++ G ++ S Q H +F+G++ T +++ V
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 145
Query: 310 IELLKDLQSSGRNRGFAFIEY-----YNHACAEY-----SRQKMSNSNFKLENN------ 353
+++ D S+GR++G+ F+++ N A AE S + M S + N
Sbjct: 146 AKVVTD-PSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQ 204
Query: 354 ------------APTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKIT 401
AP ++ P S+ + + + V NL +N+T++ LKK F G++
Sbjct: 205 YVTKVTVPSAVAAPVQAYVAPPESDVTCTT----ISVANLDQNVTEEELKKAFSQLGEVI 260
Query: 402 KVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK 451
V +P K +G+V F R SA +A++ + I + + S +K
Sbjct: 261 YVKIPATKG------YGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSK 304
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 92/184 (50%), Gaps = 22/184 (11%)
Query: 196 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 255
PP +++++G + +V + L + + G V ++ +++ + +G+ FV T E A
Sbjct: 109 PPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAE 168
Query: 256 QAIEELNNSEFKGKKIKCSSS--------------QAKHRLFIGNIPKKWTVED--MKKV 299
+A+E+ N+ E G+++ + + A R+++GN+P W V+ ++++
Sbjct: 169 KAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLP--WDVDSGRLERL 226
Query: 300 VADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSW 359
++ G V+ ++ D + +GR+RGF F++ N + + N LE A V+
Sbjct: 227 FSEHGK-VVDARVVSDRE-TGRSRGFGFVQMSNENEVNVAIAALDGQN--LEGRAIKVNV 282
Query: 360 AEPR 363
AE R
Sbjct: 283 AEER 286
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 279 KHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEY 338
+ +LF+GN+P + V+ + G + I + + + ++RGF F+ AE
Sbjct: 112 EAKLFVGNLP--YDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEK 169
Query: 339 SRQKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVK----AVYVKNLPENITQDSLKKLF 394
+ +K ++ F++ TV+ A PR S +V +YV NLP ++ L++LF
Sbjct: 170 AVEKFNS--FEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF 227
Query: 395 EHHGKITKV-VLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK 451
HGK+ V+ ++G+ + FGFV S+ + A+ +DG+NLE K
Sbjct: 228 SEHGKVVDARVVSDRETGRSRG-FGFVQMSNENEVNVAIA-----ALDGQNLEGRAIK 279
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 126/294 (42%), Gaps = 55/294 (18%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
++IG + V E L GE+ V++++ K +G+ +GY F+ F + A + ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 262 NNSEFKGKKI-------KCSSSQA-----KHRLFIGNIPKKWTVEDMKKVVADVGPGVIS 309
N ++ G ++ S Q H +F+G++ T +++ V
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 145
Query: 310 IELLKDLQSSGRNRGFAFIEY-----YNHACAEY-----SRQKMSNSNFKLENN------ 353
+++ D S+GR++G+ F+++ N A AE S + M S + N
Sbjct: 146 AKVVTD-PSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQ 204
Query: 354 ----------------APTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHH 397
AP ++ P S+ + + + V NL +N+T++ LKK F
Sbjct: 205 YVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTT----ISVANLDQNVTEEELKKAFSQL 260
Query: 398 GKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK 451
G++ V +P K +G+V F R SA +A++ + I + + S +K
Sbjct: 261 GEVIYVKIPATKG------YGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSK 308
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 22/177 (12%)
Query: 275 SSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAF------- 327
SS+A R++IGNIP+ T E + K+V + G V ++++ D + SGR+R F F
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHG-AVEKVQVMYD-KYSGRSRRFGFATMKSVE 128
Query: 328 -----IEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSA-VSQVKAVYVKNL 381
+E N E R+ N K ++P +S + SE SA V VYV NL
Sbjct: 129 DANAVVEKLNGNTVE-GREIKVNITEKPIASSPDLSVLQ---SEDSAFVDSPYKVYVGNL 184
Query: 382 PENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFS---DRSSAMKALKNT 435
+ +T++ L+ LF GK+ + + + FGFV FS D +A+ AL N+
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNS 241
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 22/177 (12%)
Query: 275 SSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAF------- 327
SS+A R++IGNIP+ T E + K+V + G V ++++ D + SGR+R F F
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHG-AVEKVQVMYD-KYSGRSRRFGFATMKSVE 128
Query: 328 -----IEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSA-VSQVKAVYVKNL 381
+E N E R+ N K ++P +S + SE SA V VYV NL
Sbjct: 129 DANAVVEKLNGNTVE-GREIKVNITEKPIASSPDLSVLQ---SEDSAFVDSPYKVYVGNL 184
Query: 382 PENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFS---DRSSAMKALKNT 435
+ +T++ L+ LF GK+ + + + FGFV FS D +A+ AL N+
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNS 241
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 121/261 (46%), Gaps = 32/261 (12%)
Query: 223 VGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEELNNSEFK-------------GK 269
GE + ++++ K++G +GY F+ F A + ++ N + G
Sbjct: 103 TGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGA 162
Query: 270 KIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIE 329
+ + +H +F+G++ T + + V V +++ D +++GR++G+ F+
Sbjct: 163 GERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVND-RTTGRSKGYGFVR 221
Query: 330 YYNH-----ACAEYSRQKMSNSNFKL---ENNAP-TVSWAEPRNSESSAVSQ---VKAVY 377
+ + A E + Q S+ + N P T+ A +N++ ++ ++
Sbjct: 222 FADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIF 281
Query: 378 VKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEK 437
V + +++T+D LK +F G++ V +P K R GFV +++R+ A +AL
Sbjct: 282 VGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK------RCGFVQYANRACAEQALSVLNG 335
Query: 438 YEIDGKNLECSLAKPEADQRS 458
++ G+++ S + +++++
Sbjct: 336 TQLGGQSIRLSWGRSPSNKQT 356
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 74/145 (51%), Gaps = 7/145 (4%)
Query: 312 LLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSAVS 371
++KD +S+GR+RGF ++ + A AE ++ + +F L N V A P+
Sbjct: 34 VMKD-RSTGRSRGFGYVTF---ASAEDAKNALKGEHF-LGNRILEVKVATPKEEMRQPAK 88
Query: 372 QVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKA 431
+V ++V +P ++++ + FE +G+IT + +P + ++ GF+ FS S
Sbjct: 89 KVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDL 148
Query: 432 LKNTEKYEIDGKNLECSLAKPEADQ 456
+++T +++ G + A P+ D
Sbjct: 149 MEDT--HDLGGTTVAVDRATPKEDD 171
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 74/145 (51%), Gaps = 7/145 (4%)
Query: 312 LLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSAVS 371
++KD +S+GR+RGF ++ + A AE ++ + +F L N V A P+
Sbjct: 34 VMKD-RSTGRSRGFGYVTF---ASAEDAKNALKGEHF-LGNRILEVKVATPKEEMRQPAK 88
Query: 372 QVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKA 431
+V ++V +P ++++ + FE +G+IT + +P + ++ GF+ FS S
Sbjct: 89 KVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDL 148
Query: 432 LKNTEKYEIDGKNLECSLAKPEADQ 456
+++T +++ G + A P+ D
Sbjct: 149 MEDT--HDLGGTTVAVDRATPKEDD 171
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 55/250 (22%), Positives = 108/250 (43%), Gaps = 33/250 (13%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
++IG + + E L GE+ ++++ K++G+ +GY F+ F + A + ++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 262 NNSE--------FKGKKIKCSSSQAK-----HRLFIGNIPKKWTVEDMKKVVADVGPGVI 308
NN+ F+ SS + + +F+G++ T + + P V
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 309 SIELLKDLQSSGRNRGFAFIEYYNH-----ACAEYSRQKMSNSNFKLENNAPTVSWAEPR 363
+++ D + +GR +G+ F+ + + A E + S ++ A R
Sbjct: 184 GAKVVID-RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
Query: 364 NSESSAVSQV--------KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKS 415
+S S+ + V V+V L ++T D LK +F +G+I V +P K
Sbjct: 243 DSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK------ 296
Query: 416 RFGFVHFSDR 425
R GFV FS++
Sbjct: 297 RCGFVQFSEK 306
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 258 IEELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVADVGPGVIS 309
+E LN + KGK ++ S+ + +F+ N+ + + + + + G V+S
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGK-VLS 59
Query: 310 IELLKDLQSSGRNRGFAFIEYYNH-----ACAEYSRQKMSNSNFKLENNAPTVSWAEPRN 364
++ +D +SG ++G+ F+++Y+ AC ++ + N + + P VS +
Sbjct: 60 CKVARD--ASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHV---CPFVSRGQWDK 114
Query: 365 SESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKS-RFGFVHFS 423
S VYVKNL E T LK+LF G+IT V+ K G+ KS RFGFV+F
Sbjct: 115 SRV-----FTNVYVKNLVETATDADLKRLFGEFGEITSAVV--MKDGEGKSRRFGFVNFE 167
Query: 424 DRSSAMKALKNTEKYEIDGKNLECSLAKPEADQ 456
+A+ A++ +D K L A+ + ++
Sbjct: 168 KAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR 200
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
SS+++IGG+A ++ E+ LR GEV + R++ +E+G +G+ FV F + E AS AI
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 259 EELNNSEFKGKKIK 272
+ L+ + G+ +K
Sbjct: 99 QALDGRDLHGRVVK 112
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 30/216 (13%)
Query: 270 KIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAF-- 327
K +S + RL++GN+P T ++ ++ + G V+ ++++ D + + R+RGF F
Sbjct: 106 KQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGT-VVDVQIVYD-KVTDRSRGFGFVT 163
Query: 328 ---IEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEP--------RNSESSAVSQVKAV 376
IE A ++ ++ K+ N P V R++ S V V
Sbjct: 164 MGSIEEAKEAMQMFNSSQIGGRTVKV--NFPEVPRGGENEVMRTKIRDNNRSYVDSPHKV 221
Query: 377 YVKNLPENITQDSLKKLF-EHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNT 435
Y NL N+T LK F + G + V+ +G+ + FGF+ F + AL
Sbjct: 222 YAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRG-FGFISFESAENVQSALATM 280
Query: 436 EKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLP 471
E++G+ L +LA S +KP V P
Sbjct: 281 NGVEVEGRALRLNLA-----------SEREKPTVSP 305
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 25/152 (16%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
+Y+G + ++ +L G V +V+I+ K + +G+ FV + E A +A++
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 262 NNSEFKGKKIKC-----------------------SSSQAKHRLFIGNIPKKWTVEDMKK 298
N+S+ G+ +K S + H+++ GN+ T + +K
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 299 VVADVGPGVISIELLKDLQSSGRNRGFAFIEY 330
D PGV+ +++ + +++GR+RGF FI +
Sbjct: 238 AFGDQ-PGVLGAKVIYE-RNTGRSRGFGFISF 267
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 59.7 bits (143), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 203 YIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
++GG+A ++EDL R F Q G+V + +I+ +ESG +G+ FV FK ++ AIEE+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQ-FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 262 NNSEFKGKKIKCSSSQAK 279
N E G+ I + +Q++
Sbjct: 68 NGKELDGRVITVNEAQSR 85
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+LFIG I E +K+ + G VI +LKD +++GR RGF F+ + + A AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGE-VIEAVILKD-RTTGRARGFGFVVFADPAVAEIVI 64
Query: 341 QKMSNSNFKLENNAPTVSWAEPRN-------SESSAV-------SQVKAVYVKNLPENIT 386
+ N + +L V PR+ S SS++ + + ++V LP ++T
Sbjct: 65 TEKHNIDGRLVEAKKAV----PRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 387 QDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLE 446
+ K FE G T VV+ + Q FGF+ + + K L T +E++GK +E
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT-FHELNGKMVE 179
Query: 447 CSLAKPE 453
A P+
Sbjct: 180 VKRAVPK 186
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 24/161 (14%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
+ +++IGGI+ + +EE L+ + S GEV E I+K + +G +G+ FV F +A I
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 259 EELNNSEFK---GKKI------------KCSSSQAK-------HRLFIGNIPKKWTVEDM 296
E +N + + KK SS Q ++F+G +P T D
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 297 KKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAE 337
K G + ++ D + R RGF FI Y + E
Sbjct: 125 KTYFEQFGT-TTDVVVMYDHNTQ-RPRGFGFITYDSEEAVE 163
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+LFIG I E +K+ + G VI +LKD +++GR RGF F+ + + A AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGE-VIEAVILKD-RTTGRARGFGFVVFADPAVAEIVI 64
Query: 341 QKMSNSNFKLENNAPTVSWAEPRN-------SESSAV-------SQVKAVYVKNLPENIT 386
+ N + +L V PR+ S SS++ + + ++V LP ++T
Sbjct: 65 TEKHNIDGRLVEAKKAV----PRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 387 QDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLE 446
+ K FE G T VV+ + Q FGF+ + + K L T +E++GK +E
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT-FHELNGKMVE 179
Query: 447 CSLAKPE 453
A P+
Sbjct: 180 VKRAVPK 186
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 24/161 (14%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
+ +++IGGI+ + +EE L+ + S GEV E I+K + +G +G+ FV F +A I
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 259 EELNNSEFK---GKKI------------KCSSSQAK-------HRLFIGNIPKKWTVEDM 296
E +N + + KK SS Q ++F+G +P T D
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 297 KKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAE 337
K G + ++ D + R RGF FI Y + E
Sbjct: 125 KTYFEQFGT-TTDVVVMYDHNTQ-RPRGFGFITYDSEEAVE 163
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 125/297 (42%), Gaps = 53/297 (17%)
Query: 196 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 255
P VY+G I V+E L+ G V ++++ E+ Y FV + + A
Sbjct: 50 PSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRK----EKSSYGFVHYFDRRSAG 105
Query: 256 QAIEELNNSEFKGKKIKCSSSQAKHR---------LFIGNIPKKWTVEDMKKVVADVGPG 306
AI LN G+ IK + + A + +F+G++ + T + M V P
Sbjct: 106 LAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVT-DAMLFTCFSVYPT 164
Query: 307 VISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSN---SNFKLENNAPT---VSWA 360
++ D Q +GR+RGF F+ + N A+ + +++ + ++ N T S
Sbjct: 165 CSDARVMWD-QKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGE 223
Query: 361 EPRNSESSAV--------------------SQVKAVYVKNLPENITQDSLKKLFEHHGK- 399
+ ++S+S +V +Q VYV NL ++Q L + F G
Sbjct: 224 DKQSSDSKSVVELTSGDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAG 283
Query: 400 -ITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK--NTEKYEIDGKNLECSLA-KP 452
I +V + Q FGFV +S A A++ NT Y + G+ ++CS KP
Sbjct: 284 VIEEVRV------QRDKGFGFVRYSTHVEAALAIQMGNTHSY-LSGRQMKCSWGSKP 333
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 203 YIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
++GG+A ++EDL R F Q G+V + +I+ +ESG +G+ FV FK ++ AIEE+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQ-FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 262 NNSEFKGKKIKCSSSQ 277
N E G+ I + +Q
Sbjct: 68 NGKELDGRVITVNEAQ 83
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 203 YIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
++GG+A ++EDL R F Q G+V + +I+ +ESG +G+ FV FK ++ AIEE+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQ-FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 262 NNSEFKGKKIKCSSSQ 277
N E G+ I + +Q
Sbjct: 68 NGKELDGRVITVNEAQ 83
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 124/297 (41%), Gaps = 42/297 (14%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE-- 259
+++G + + + E L EVS V++++ K++ + +GY FV F ++ A +A++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 260 ------------ELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGV 307
LN + F + + S + +F+G++ + + + A P V
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 308 ISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSN------------------SNFK 349
+++ D ++GR++G+ F+ + + + +M+ + +
Sbjct: 241 KGAKVVID-SNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYG 299
Query: 350 LENNAPTVSWAEPRNSESS---AVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLP 406
+N + ++ A S S ++V L ++T++ L + F G++ V +P
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 407 PAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSN 463
K GFV F++R SA +A+ N I + S + Q S + N
Sbjct: 360 VGKG------CGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGN 410
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 198 HSSE------VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTK 251
HS+E VY+GG+ +SEE L G V V + K + + + Y F+ ++++
Sbjct: 17 HSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSE 76
Query: 252 ELASQAIEELNNSEFKGKKIKCS-SSQAKH------RLFIGNIPKKWTVEDMKKVVADVG 304
E A AI+ LN + GK I+ + +SQ K LFIGN+ + + + G
Sbjct: 77 EDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
Query: 305 PGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRN 364
+ ++++D +G +RGF FI Y + ++ + + M+ L N TVS+A ++
Sbjct: 137 VIASNPKIMRD-PDTGNSRGFGFISYDSFEASDAAIESMTGQ--YLSNRQITVSYAYKKD 193
Query: 365 SES 367
++
Sbjct: 194 TKG 196
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 90/181 (49%), Gaps = 26/181 (14%)
Query: 197 PHSS-------EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFK 249
PHS ++++GG+A + + GE+++ IMK +++G+ +G+ FV +
Sbjct: 32 PHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYA 91
Query: 250 TKELASQAIEELNNSEFKGKKIKC---------SSSQAK-HRLFIGNIPKKWTVEDMKKV 299
+ + I+ +N GK+++ SS+ K ++F+G IP ++ K+
Sbjct: 92 DSSVVDKVIQ--DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEF 149
Query: 300 VADVGPGVISIELLKDLQSSGRNRGFAFIEY-----YNHACAEYSRQKMSNSNFKLENNA 354
G + ++++D S+GR+RGF F+ Y +H A+ +R ++S + +++
Sbjct: 150 FMQFGE-LKEHQIMRD-HSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAE 207
Query: 355 P 355
P
Sbjct: 208 P 208
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 84/195 (43%), Gaps = 6/195 (3%)
Query: 259 EELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQS 318
E++ + + K + + ++F+G + ++ T + K G S+ ++KD +
Sbjct: 21 EDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSV-IMKD-RK 78
Query: 319 SGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVKAVYV 378
+G+ RGF F+ Y + + + K+ N + + PR S SS + K ++V
Sbjct: 79 TGQPRGFGFVTYADSSVVD----KVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFV 134
Query: 379 KNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKY 438
+P ++ D K+ F G++ + + S FGFV + L +
Sbjct: 135 GGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRI 194
Query: 439 EIDGKNLECSLAKPE 453
E+ G +E A+P+
Sbjct: 195 ELSGTQVEIKKAEPK 209
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 138/312 (44%), Gaps = 41/312 (13%)
Query: 178 NHTNDEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGE--VSEVRIMKAK 235
NH + + + + A + +++G + N + E L S E + +++++ K
Sbjct: 81 NHHHFHHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNK 140
Query: 236 ESGERKGYAFVAFKTKELASQAIEE--------------LNNSEFKGKKIKCSSSQAKHR 281
+G +GY FV F++ ++A + ++E LN + F + + ++
Sbjct: 141 HNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLS 200
Query: 282 LFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQ 341
+F+G++ + + + ++ P V + +++ D ++GR++G+ F+ + + E ++
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDA-NTGRSKGYGFVRFGDE--NERTKA 257
Query: 342 KMSNSNFKLENNAPTVSWAEPRNSE----------SSAVSQVKA------VYVKNLPENI 385
+ K + A + A PR + S A ++ + ++V L ++
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 386 TQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNL 445
T + LK+ F G+I V +P K GFV F +R +A +AL+ I + +
Sbjct: 318 TDEDLKQPFSEFGEIVSVKIPVGKG------CGFVQFVNRPNAEEALEKLNGTVIGKQTV 371
Query: 446 ECSLAKPEADQR 457
S + A+++
Sbjct: 372 RLSWGRNPANKQ 383
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 125/300 (41%), Gaps = 56/300 (18%)
Query: 196 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 255
P VY+G I V+E L+ G V ++++ E+ Y FV + + A
Sbjct: 50 PSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRK----EKSSYGFVHYFDRRSAG 105
Query: 256 QAIEELNNSEFKGKKIKCSSSQAKHR---------LFIGNIPKKWTVEDMKKVVADVGPG 306
AI LN G+ IK + + A + +F+G++ + T + M V P
Sbjct: 106 LAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVT-DAMLFTCFSVYPT 164
Query: 307 VISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSN---SNFKLENNAPT---VSWA 360
++ D Q +GR+RGF F+ + N A+ + +++ + ++ N T S
Sbjct: 165 CSDARVMWD-QKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGE 223
Query: 361 EPRNSESSAV-----------------------SQVKAVYVKNLPENITQDSLKKLFEHH 397
+ ++S+S +V +Q VYV NL ++Q L + F
Sbjct: 224 DKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSL 283
Query: 398 GK--ITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK--NTEKYEIDGKNLECSLA-KP 452
G I +V + Q FGFV +S A A++ NT Y + G+ ++CS KP
Sbjct: 284 GAGVIEEVRV------QRDKGFGFVRYSTHVEAALAIQMGNTHSY-LSGRQMKCSWGSKP 336
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 48/74 (64%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
SS++++GG++ + L+ S GEV+E ++ +E+G +G+ FV+F ++ A+ AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 259 EELNNSEFKGKKIK 272
+E++ E G++I+
Sbjct: 94 KEMDGKELNGRQIR 107
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 48/74 (64%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
SS++++GG++ + L+ S GEV+E ++ +E+G +G+ FV+F ++ A+ AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 259 EELNNSEFKGKKIK 272
+E++ E G++I+
Sbjct: 94 KEMDGKELNGRQIR 107
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 94/189 (49%), Gaps = 19/189 (10%)
Query: 279 KHRLFIGNIPKKWTVED--MKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACA 336
+ +LFIG I W ++ +++ ++ G V+ + ++++ +++GR RGF F+ + + A
Sbjct: 5 QGKLFIGGI--SWDTDENLLREYFSNFGE-VLQVTVMRE-KATGRPRGFGFVAFSDPAVI 60
Query: 337 E---YSRQKMSNSNFKL------ENNAP---TVSWAEPRNSESSAVSQVKAVYVKNLPEN 384
+ + + N + + E +P + ++ RN +S A + K ++V LP
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 385 ITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 444
+T D + FE +G ++ V+ ++ Q FGFV F S L T ++++GK
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKT-FHDLNGKQ 179
Query: 445 LECSLAKPE 453
+E A P+
Sbjct: 180 VEVKRALPK 188
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 26/155 (16%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
+++IGGI+ + E LR + + GEV +V +M+ K +G +G+ FVAF + + ++
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
Query: 260 E---LNNSEFKGKKIKCSSSQA---------------------KHRLFIGNIPKKWTVED 295
+ ++N + K+ Q+ ++F+G +P T ++
Sbjct: 66 DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 296 MKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEY 330
+ GP +S ++ Q++ R RGF F+ +
Sbjct: 126 FRAYFETYGP--VSDAVIMIDQTTQRPRGFGFVSF 158
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 120/305 (39%), Gaps = 66/305 (21%)
Query: 196 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 255
P VY+G I V+E L+ S G V ++++ +S Y FV + + A+
Sbjct: 55 PSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAA 110
Query: 256 QAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKD 315
AI LN G+ IK + + A + ++ T V D+ P V L +
Sbjct: 111 LAILSLNGRHLFGQPIKVNWAYATGQ-------REDTSSHFNIFVGDLSPEVTDATLYQS 163
Query: 316 L--------------QSSGRNRGFAFIEYYNHACAE-------------------YSRQK 342
Q +GR+RGF F+ + N A+ ++ +
Sbjct: 164 FSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKG 223
Query: 343 MSNSNFKLENNAPTV---------SWAEPRNSES-SAVSQVKAVYVKNLPENITQDSLKK 392
++ + KL ++ +V E N E+ SQ VYV NL +TQ L +
Sbjct: 224 ATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHR 283
Query: 393 LFE--HHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK--NTEKYEIDGKNLECS 448
F G I +V + Q FGFV ++ A A++ NT+ Y + + ++CS
Sbjct: 284 YFHALGAGVIEEVRV------QRDKGFGFVRYNTHPEAALAIQMGNTQPYLFN-RQIKCS 336
Query: 449 LA-KP 452
KP
Sbjct: 337 WGNKP 341
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 70/138 (50%), Gaps = 12/138 (8%)
Query: 201 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEE 260
+++IGG+ + + GE+++ IM+ + +G+ +G+ F+ F + + IE+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 261 LNNSEFKGKKIK------CSSSQAK----HRLFIGNIPKKWTVEDMKKVVADVGPGVISI 310
+ K +IK +Q+K ++F+G IP T +++K A G V+
Sbjct: 80 THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG-NVVEH 138
Query: 311 ELLKDLQSSGRNRGFAFI 328
++++D + R+RGF F+
Sbjct: 139 QVIRD-HETNRSRGFGFV 155
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 120/283 (42%), Gaps = 48/283 (16%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE-- 259
+++G + + + E L GEVS V++++ K + + +GY FV F ++ A + ++
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 260 ------------ELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGV 307
+N + F + + + +F+G++ T + + +D P V
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 308 ISIELLKDLQSSGRNRGFAFIEYYNH-----ACAEYSRQKMSNSNFKLENNAPTVSWAEP 362
S +++ D ++GR++G+ F+ + + A E + SN ++ P + A
Sbjct: 230 KSAKVVID-SNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQ 288
Query: 363 RNSESSAV---------------------SQVKAVYVKNLPENITQDSLKKLFEHHGKIT 401
+ S AV S ++V + ++ + L++ F G++
Sbjct: 289 QQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVV 348
Query: 402 KVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 444
V +P K GFV F+DR SA A+++ I GKN
Sbjct: 349 SVKIPVGKG------CGFVQFADRKSAEDAIESLNGTVI-GKN 384
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
V++G I + +EE LR C VG V R++ +E+G+ KGY F +K +E A A L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 262 NNSEFKGKKIKC 273
+ E G++++
Sbjct: 71 QSYEINGRQLRV 82
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 73/139 (52%), Gaps = 12/139 (8%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
+++IGG+ + + GE+++ IM+ + +G+ +G+ F+ F + + IE
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 260 E---LNNSEFKGKKI---KCSSSQAK----HRLFIGNIPKKWTVEDMKKVVADVGPGVIS 309
+ +N + + K+ +Q+K ++F+G IP T +++K A G V+
Sbjct: 79 DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG-NVVE 137
Query: 310 IELLKDLQSSGRNRGFAFI 328
++++D +++ R+RGF F+
Sbjct: 138 HQVIRDHETN-RSRGFGFV 155
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
SS++++GGI+ + E LR GEV + +I+ +E+G +G+AFV F + E AS A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 259 EELNNSEFKGKKIK 272
+L+ + G++I+
Sbjct: 93 -QLDGQDLHGRRIR 105
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 15/172 (8%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+LF+GN+ + + + G I+ E++ + ++ ++RGF F+ + AE +
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIA-EVIYNRETD-QSRGFGFVTMSSVDEAETAV 208
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVKA----VYVKNLPENITQDSLKKLFEH 396
+K + + L TV+ A PR S +V VYV NLP ++ L++LF
Sbjct: 209 EKFNR--YDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
Query: 397 HGKITKV-VLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLEC 447
HGK+ + V+ ++G+ + FGFV SD +A+ +DG+NLE
Sbjct: 267 HGKVVEARVVYDRETGRSRG-FGFVTMSDVDELNEAISA-----LDGQNLEG 312
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 91/189 (48%), Gaps = 32/189 (16%)
Query: 196 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 255
P +++++G +A +V+ + L + + G V ++ +E+ + +G+ FV + + A
Sbjct: 146 PSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
Query: 256 QAIEELNNSEFKGKKIKCSSSQAKH--------------RLFIGNIPKKWTVED--MKKV 299
A+E+ N + G+ + + + + R+++GN+P W V++ ++++
Sbjct: 206 TAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLP--WDVDNGRLEQL 263
Query: 300 VADVGPGVISIELLKDLQSSGRNRGFAF-----IEYYNHACAEYSRQKMSNSNFKLENNA 354
++ G V+ ++ D + +GR+RGF F ++ N A + Q LE A
Sbjct: 264 FSEHGK-VVEARVVYDRE-TGRSRGFGFVTMSDVDELNEAISALDGQ-------NLEGRA 314
Query: 355 PTVSWAEPR 363
V+ AE R
Sbjct: 315 IRVNVAEER 323
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 201 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEE 260
++++G + +EE++R + + G V EV ++K K +G+++G FV + T + A +AI
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 261 LNNS-EFKGK----KIKCSSSQAKH------RLFIGNIPKKWTVEDMKKVVADVGPGVIS 309
L+N G +++ + + + +LF+G++ K+ T ++++++ G V
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVED 239
Query: 310 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAP-TVSWAEPR 363
+ L++D ++RG F++Y + A + ++ + N P V +AEP+
Sbjct: 240 VYLMRDEYR--QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPK 292
>AT1G29400.2 | Symbols: AML5, ML5 | MEI2-like protein 5 |
chr1:10290393-10293696 REVERSE LENGTH=800
Length = 800
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 313 LKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSAVSQ 372
++ L ++ ++RGF I YY+ A + + + N L + ++ P+++ S
Sbjct: 194 IRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNK--PLRRRKLDIHFSIPKDNPSEKDMN 251
Query: 373 VKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKAL 432
+ V NL +I+ D L +F HG+I ++ P K + FV F D A AL
Sbjct: 252 QGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHK-----FVEFYDVRGAEAAL 306
Query: 433 KNTEKYEIDGKNLECSLAKPEADQRS 458
K + EI GK ++ ++P +RS
Sbjct: 307 KALNRCEIAGKRIKVEPSRPGGARRS 332
>AT1G29400.1 | Symbols: AML5, ML5 | MEI2-like protein 5 |
chr1:10290393-10293696 REVERSE LENGTH=800
Length = 800
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 313 LKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSAVSQ 372
++ L ++ ++RGF I YY+ A + + + N L + ++ P+++ S
Sbjct: 194 IRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNK--PLRRRKLDIHFSIPKDNPSEKDMN 251
Query: 373 VKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKAL 432
+ V NL +I+ D L +F HG+I ++ P K + FV F D A AL
Sbjct: 252 QGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHK-----FVEFYDVRGAEAAL 306
Query: 433 KNTEKYEIDGKNLECSLAKPEADQRS 458
K + EI GK ++ ++P +RS
Sbjct: 307 KALNRCEIAGKRIKVEPSRPGGARRS 332
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/263 (19%), Positives = 118/263 (44%), Gaps = 39/263 (14%)
Query: 225 EVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEELNNS--------------EFKGKK 270
E+ V++++ K +G +GY FV F++ ++A + + E N + F +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 271 IKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEY 330
+ ++ +F+G++ + + + ++ P V + +++ D ++GR++G+ F+ +
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDA-NTGRSKGYGFVRF 246
Query: 331 YNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSE----------SSAVSQVKA----- 375
+ E ++ + K + A + A PR + + +++ +
Sbjct: 247 GDE--NERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNT 304
Query: 376 -VYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKN 434
++V L ++T + LK+ F G+I V +P K GFV F +R +A +AL+
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKG------CGFVQFVNRPNAEEALEK 358
Query: 435 TEKYEIDGKNLECSLAKPEADQR 457
I + + S + A+++
Sbjct: 359 LNGTVIGKQTVRLSWGRNPANKQ 381
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 20/200 (10%)
Query: 269 KKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFI 328
+K++ +S K LFIG I E +++ G ++ +++D +++GR RGF FI
Sbjct: 3 QKMESASDLGK--LFIGGISWDTDEERLQEYFGKYGD-LVEAVIMRD-RTTGRARGFGFI 58
Query: 329 EYYNHACAEY--------------SRQKMSNSNFK-LENNAPTVSWAEPRNSESSAVSQV 373
+ + + AE +++ + + + L+ +A + P + + ++
Sbjct: 59 VFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGART 118
Query: 374 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK 433
K ++V LP +IT+ K F+ G I VV+ + Q FGF+ F S L
Sbjct: 119 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 178
Query: 434 NTEKYEIDGKNLECSLAKPE 453
T +E++GK +E A P+
Sbjct: 179 KT-FHELNGKMVEVKRAVPK 197
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
S +++IGGI+ SE+ LR + S GEV E IMK + +G +G+ FV F +A + +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 259 ---EELNNSEFKGKKI----------KCSSS-------QAKHRLFIGNIPKKWTVEDMKK 298
++ + KK K +SS ++F+G + T + KK
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKK 124
Query: 299 VVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQK 342
A G + + ++ D ++ R RGF FI Y + + QK
Sbjct: 125 YFAQFGM-ITDVVVMYDHRTQ-RPRGFGFISYDSEEAVDKVLQK 166
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
S +++IGGI+ SE+ LR + S GEV E IMK + +G +G+ FV F +A + +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 259 ---EELNNSEFKGKKI----------KCSSS-------QAKHRLFIGNIPKKWTVEDMKK 298
++ + KK K +SS ++F+G + T + KK
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKK 124
Query: 299 VVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQK 342
A G + + ++ D ++ R RGF FI Y + + QK
Sbjct: 125 YFAQFGM-ITDVVVMYDHRTQ-RPRGFGFISYDSEEAVDKVLQK 166
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 20/200 (10%)
Query: 269 KKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFI 328
+K++ +S K LFIG I E +++ G ++ +++D +++GR RGF FI
Sbjct: 6 QKMESASDLGK--LFIGGISWDTDEERLQEYFGKYGD-LVEAVIMRD-RTTGRARGFGFI 61
Query: 329 EYYNHACAEY--------------SRQKMSNSNFK-LENNAPTVSWAEPRNSESSAVSQV 373
+ + + AE +++ + + + L+ +A + P + + ++
Sbjct: 62 VFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGART 121
Query: 374 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK 433
K ++V LP +IT+ K F+ G I VV+ + Q FGF+ F S L
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 434 NTEKYEIDGKNLECSLAKPE 453
T +E++GK +E A P+
Sbjct: 182 KT-FHELNGKMVEVKRAVPK 200
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 258 IEELNNSEFKGKKIKCSSSQAKH---------------RLFIGNIPKKWTVEDMKKVVAD 302
+E ++ G + Q KH +LF+G + + T E
Sbjct: 29 VETFDDRRNGGAAVDTGGIQMKHSVDHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGK 88
Query: 303 VGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEP 362
G V S+ + + +G RGF F+ + + A AE K+ + +++ + P
Sbjct: 89 FGEVVDSVIMTDRI--TGNPRGFGFVTFADSAVAE----KVLEEDHVIDDRKVDLKRTLP 142
Query: 363 RNSESS---AVSQVKAVYVKNLPENITQDSLKKLFEHHGKITK-VVLPPAKSGQEKSRFG 418
R + + AVS+ + ++V LP + +D LK F +G I + ++ +G+ + FG
Sbjct: 143 RGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRG-FG 201
Query: 419 FVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNS 464
FV F S + + + +E+ K +E A+P + +G NS
Sbjct: 202 FVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEP----KRTGRDNS 243
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 201 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEE 260
++++G + +EE++R + + G V EV ++K K +G+++G FV + T + A +AI
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 261 LNNS-EFKGK----KIKCSSSQAKH------RLFIGNIPKKWTVEDMKKVVADVGPGVIS 309
L+N G +++ + + + +LF+G++ K+ T ++++++ G V
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVED 239
Query: 310 IELLKDLQSSGRNRGFAFIEYYNHACA 336
+ L++D ++RG F++Y + A
Sbjct: 240 VYLMRDEYR--QSRGCGFVKYSSKETA 264
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 201 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEE 260
++++G + +EE++R + + G V EV ++K K +G+++G FV + T + A +AI
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 261 LNNS-EFKGK----KIKCSSSQAKH------RLFIGNIPKKWTVEDMKKVVADVGPGVIS 309
L+N G +++ + + + +LF+G++ K+ T ++++++ G V
Sbjct: 106 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVED 164
Query: 310 IELLKDLQSSGRNRGFAFIEYYNHACA 336
+ L++D ++RG F++Y + A
Sbjct: 165 VYLMRDEYR--QSRGCGFVKYSSKETA 189
>AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr3:22900311-22902159 REVERSE LENGTH=264
Length = 264
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 324 GFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE-----PRNSES--SAVSQVKAV 376
G+AF+ + + AE + +K+ N F E +V WA+ PR S + K +
Sbjct: 36 GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTL 95
Query: 377 YVKNL-PENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNT 435
+V N P + ++K FE +GK+T V + + F FV F + A KAL+ T
Sbjct: 96 FVINFDPIRTKEHDIEKHFEPYGKVTNVRI--------RRNFSFVQFETQEDATKALEAT 147
Query: 436 EKYEIDGKNLECSLAKPEADQRSS-GTSNSQKPVVLPTYPHR 476
++ +I + + A + D+R S + + P Y R
Sbjct: 148 QRSKILDRVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRR 189
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 178 NHTNDEVEKKKHAELLALPP-HSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKE 236
++ D + + + PP + +++I G++ SE+ LR + GE+ EV+I+ K
Sbjct: 259 DYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 318
Query: 237 SGERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAK 279
S KGYAF+ + T+E A A++E+N G I ++ K
Sbjct: 319 SKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTK 361
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+LFIG I E ++ ++ G V+ +++D +++GR RGF FI + + +E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGD-VVEAVIMRD-RATGRARGFGFIVFADPCVSE--- 61
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNSES----------------SAVSQVKAVYVKNLPEN 384
++ ++ A PR+ + + K ++V LP +
Sbjct: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 385 ITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 444
IT++ K F+ G I VV+ + Q FGF+ F D A+ + + +E++GK
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLHKTFHELNGKL 179
Query: 445 LECSLAKPE 453
+E A P+
Sbjct: 180 VEVKRAVPK 188
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+LFIG I E ++ ++ G V+ +++D +++GR RGF FI + + +E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGD-VVEAVIMRD-RATGRARGFGFIVFADPCVSE--- 61
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNSES----------------SAVSQVKAVYVKNLPEN 384
++ ++ A PR+ + + K ++V LP +
Sbjct: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 385 ITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 444
IT++ K F+ G I VV+ + Q FGF+ F D A+ + + +E++GK
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLHKTFHELNGKL 179
Query: 445 LECSLAKPE 453
+E A P+
Sbjct: 180 VEVKRAVPK 188
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+LFIG I E ++ ++ G V+ +++D +++GR RGF FI + + +E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGD-VVEAVIMRD-RATGRARGFGFIVFADPCVSE--- 61
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNSES----------------SAVSQVKAVYVKNLPEN 384
++ ++ A PR+ + + K ++V LP +
Sbjct: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 385 ITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 444
IT++ K F+ G I VV+ + Q FGF+ F D A+ + + +E++GK
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLHKTFHELNGKL 179
Query: 445 LECSLAKPE 453
+E A P+
Sbjct: 180 VEVKRAVPK 188
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+LFIG I E ++ ++ G V+ +++D +++GR RGF FI + + +E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGD-VVEAVIMRD-RATGRARGFGFIVFADPCVSE--- 61
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNSES----------------SAVSQVKAVYVKNLPEN 384
++ ++ A PR+ + + K ++V LP +
Sbjct: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 385 ITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 444
IT++ K F+ G I VV+ + Q FGF+ F D A+ + + +E++GK
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLHKTFHELNGKL 179
Query: 445 LECSLAKPE 453
+E A P+
Sbjct: 180 VEVKRAVPK 188
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 192 LLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTK 251
L +L S+++YIGG++ E L+ S V+E R+M K +G +GY FV F ++
Sbjct: 23 LGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISE 82
Query: 252 ELASQAIEELNNSEFKG 268
+ A+ AI +N E G
Sbjct: 83 DSANSAISAMNGQELNG 99
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 26/155 (16%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
++++GGI+ E+ LR + GEVS+ +M+ K +G +G+ FV F + + ++
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 260 ELNNSEFKGKKIKCSSSQAKH------------------------RLFIGNIPKKWTVED 295
E ++ + + +K + S+ + ++F+G +P T E+
Sbjct: 66 EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125
Query: 296 MKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEY 330
++ GP V + ++ D Q++ R RGF F+ +
Sbjct: 126 FRQYFEVYGP-VTDVAIMYD-QATNRPRGFGFVSF 158
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
+++++GG+A + +R + + GE+ E ++ K +G KGY FV FK E A +A +
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 260 ELNNSEFKGKKIKCS 274
+ N G++ C+
Sbjct: 82 NM-NPVIDGRRANCN 95
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
VY+G ++ V + L G+V E R++ ++SG KG+ FV + + + AI+ L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 262 NNSEFKGKKIKCSSSQAK 279
+ ++ G++I+ S ++A+
Sbjct: 266 DGADLDGRQIRVSEAEAR 283
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 29/210 (13%)
Query: 272 KCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYY 331
K S A +LF+GN+P + ++ G V +E++ D + +GR+RGF F+
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAG-NVEMVEVIYD-KITGRSRGFGFVTMS 140
Query: 332 NHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSAVSQ------------------- 372
+ + E + Q+ + ++L+ V+ P S+
Sbjct: 141 SVSEVEAAAQQFNG--YELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGS 198
Query: 373 ----VKAVYVKNLPENITQDSLKKLFEHHGKITKV-VLPPAKSGQEKSRFGFVHFSDRSS 427
VYV NL + +L+ LF GK+ + V+ SG+ K FGFV +
Sbjct: 199 GAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKG-FGFVTYDSSQE 257
Query: 428 AMKALKNTEKYEIDGKNLECSLAKPEADQR 457
A+K+ + ++DG+ + S A+ +R
Sbjct: 258 VQNAIKSLDGADLDGRQIRVSEAEARPPRR 287
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
+ +Y+G ++ V + L G+V E R++ ++SG KG+ FV + + +AI
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 260 ELNNSEFKGKKIKCSSSQAK 279
LN ++ G++I+ S ++A+
Sbjct: 338 SLNGADLDGRQIRVSEAEAR 357
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
+Y+G ++ V + L G+V E R++ ++SG KG+ FV + + +AI L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 262 NNSEFKGKKIKCSSSQAK 279
N ++ G++I+ S ++A+
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
+Y+G ++ V + L G+V E R++ ++SG KG+ FV + + +AI L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 262 NNSEFKGKKIKCSSSQAK 279
N ++ G++I+ S ++A+
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
+Y+G ++ V + L G+V E R++ ++SG KG+ FV + + +AI L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 262 NNSEFKGKKIKCSSSQAK 279
N ++ G++I+ S ++A+
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 371 SQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMK 430
++ +YV LP + L+ FE G I V + + +GFV F D SA +
Sbjct: 49 TRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATR 108
Query: 431 ALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYP 474
A +N K IDG+ +C+LA R + N+Q+ VLP YP
Sbjct: 109 ACQN-PKPVIDGREAKCNLAY--IGGRVNNNQNAQQQQVLPMYP 149
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 45/80 (56%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
S +++GG++ +V+E L G+++E +IM +++G +G+ F+ F + A AI+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 260 ELNNSEFKGKKIKCSSSQAK 279
++ E K I + ++ K
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 45/80 (56%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
S +++GG++ +V+E L G+++E +IM +++G +G+ F+ F + A AI+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 260 ELNNSEFKGKKIKCSSSQAK 279
++ E K I + ++ K
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 203 YIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
++GG+A ++EDL R F Q G+V + +I+ +ESG +G+ FV FK ++ AIEE+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQ-FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 262 N 262
N
Sbjct: 68 N 68
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 27/226 (11%)
Query: 252 ELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIE 311
E + A EE + E K + +S K +LF+ N+P +V D+ ++ G V ++E
Sbjct: 70 EKETSADEETSQEE---KTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGT-VNNVE 125
Query: 312 LLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE---------P 362
+++ Q G+NRGFAF+ + A+ + K F++ +VS+A P
Sbjct: 126 IIR--QKDGKNRGFAFVTMASGEEAQAAIDKF--DTFQVSGRIISVSFARRFKKPTPKSP 181
Query: 363 RNSESSAVSQVK-AVYVKNLPENITQDSLKKLF---EHHGKITKVVL--PPAKSGQEKSR 416
+ S A + +YV NL L++LF + + +VV P +S S
Sbjct: 182 NDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRS----SG 237
Query: 417 FGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTS 462
+GFV F+ R A A+ EI G+ + + A + G S
Sbjct: 238 YGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDS 283
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
++V++GG+A +++R + + GE+ E I+ K +G+ KGY FV F+ + A++A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 260 ELNNSEFKGKKIKCS 274
+ N G+K C+
Sbjct: 77 D-PNPVIDGRKANCN 90
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
++V++GG+A +++R + + GE+ E I+ K +G+ KGY FV F+ + A++A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 260 ELNNSEFKGKKIKCS 274
+ N G+K C+
Sbjct: 77 D-PNPVIDGRKANCN 90