Miyakogusa Predicted Gene
- Lj1g3v4717390.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4717390.1 tr|G7KQW4|G7KQW4_MEDTR RNA-binding protein
OS=Medicago truncatula GN=MTR_7g104800 PE=4
SV=1,78.99,0,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; RNA recognition motif,RNA recogni,CUFF.33094.1
(496 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 405 e-113
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 405 e-113
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 377 e-105
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 377 e-105
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 361 e-100
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 360 1e-99
AT5G28390.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 149 3e-36
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 124 1e-28
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 94 2e-19
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 91 3e-18
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 91 3e-18
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 85 1e-16
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 84 2e-16
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 79 6e-15
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 79 6e-15
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 78 2e-14
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 77 3e-14
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 74 2e-13
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 73 4e-13
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 7e-13
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 9e-13
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 67 2e-11
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 5e-11
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 65 9e-11
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 65 1e-10
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 65 1e-10
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 65 1e-10
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 64 2e-10
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 64 2e-10
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-10
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 4e-10
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 63 4e-10
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-10
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 1e-09
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 62 1e-09
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 1e-09
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 1e-09
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 61 2e-09
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-09
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 59 7e-09
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 9e-09
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 59 9e-09
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 58 1e-08
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-08
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 57 2e-08
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 57 3e-08
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 3e-08
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 57 3e-08
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-08
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-08
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 4e-08
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 4e-08
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 4e-08
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 4e-08
AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850077-1... 56 6e-08
AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 56 6e-08
AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 56 6e-08
AT1G29400.2 | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10... 56 6e-08
AT1G29400.1 | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10... 56 6e-08
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 55 2e-07
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 55 2e-07
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 54 2e-07
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 54 2e-07
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 53 4e-07
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 53 5e-07
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 53 6e-07
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-bindi... 52 8e-07
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 51 1e-06
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 51 2e-06
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 51 2e-06
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 51 2e-06
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 51 2e-06
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 51 2e-06
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 50 2e-06
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 50 3e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 3e-06
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 50 3e-06
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 50 3e-06
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 50 4e-06
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 5e-06
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 5e-06
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 50 5e-06
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 9e-06
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 187/296 (63%), Positives = 243/296 (82%), Gaps = 4/296 (1%)
Query: 104 KKKHAELLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAF 163
KK+H ELLALPPHGSEVY+GGI + +E DL+ FC S+GEV+EVRIM+ K+SG+GKGYAF
Sbjct: 78 KKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAF 137
Query: 164 VAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGP 223
V F++K+LA++AI+ LNN++F+GK+IKCS++QAKHRLF+GN+P+ W D+KK +GP
Sbjct: 138 VTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGP 197
Query: 224 GVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAD--PR 281
GV +EL K+ Q+ GRNRGFAFIEYYNHACAEYS+QKMSN +FKL++NAPTVSWA+
Sbjct: 198 GVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSG 257
Query: 282 NSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFS 341
S+ SQVKA+Y+KNLP +ITQ+ LK LFEHHGKI KVV+PPAK G+E SR+GFVH++
Sbjct: 258 GGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYA 317
Query: 342 DRSSAMKALKNTEKYEIDGKNLECSLAKPQADQRSSGTS--NSQKPVVLPTYPHRL 395
+R+S M+ALKNTE+YEIDG L+C+LAKPQADQ+++ + N QK + P YP L
Sbjct: 318 ERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLL 373
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 187/296 (63%), Positives = 243/296 (82%), Gaps = 4/296 (1%)
Query: 104 KKKHAELLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAF 163
KK+H ELLALPPHGSEVY+GGI + +E DL+ FC S+GEV+EVRIM+ K+SG+GKGYAF
Sbjct: 78 KKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAF 137
Query: 164 VAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGP 223
V F++K+LA++AI+ LNN++F+GK+IKCS++QAKHRLF+GN+P+ W D+KK +GP
Sbjct: 138 VTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGP 197
Query: 224 GVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAD--PR 281
GV +EL K+ Q+ GRNRGFAFIEYYNHACAEYS+QKMSN +FKL++NAPTVSWA+
Sbjct: 198 GVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSG 257
Query: 282 NSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFS 341
S+ SQVKA+Y+KNLP +ITQ+ LK LFEHHGKI KVV+PPAK G+E SR+GFVH++
Sbjct: 258 GGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYA 317
Query: 342 DRSSAMKALKNTEKYEIDGKNLECSLAKPQADQRSSGTS--NSQKPVVLPTYPHRL 395
+R+S M+ALKNTE+YEIDG L+C+LAKPQADQ+++ + N QK + P YP L
Sbjct: 318 ERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLL 373
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/300 (58%), Positives = 242/300 (80%), Gaps = 10/300 (3%)
Query: 100 DEVEKKKHAELLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGK 159
D+ +++K++ LL+LPPHGSEV+IGG+ +V EEDLR C+ +GE+ EVR+MK ++SG+ K
Sbjct: 98 DDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSK 157
Query: 160 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 219
GYAFVAFKTK++A +AIEEL++ EFKGK I+CS S+ K+RLFIGNIPK WT ++ +KV+
Sbjct: 158 GYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIE 217
Query: 220 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAD 279
DVGPGV +IEL+KD ++ RNRGFAF+ YYN+ACA+YSRQKM +SNFKLE NAPTV+WAD
Sbjct: 218 DVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWAD 277
Query: 280 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGF 337
P++S S+A +QVKA+YVKN+PEN + + LK+LF+ HG++TK+V PP K G K FGF
Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGF 335
Query: 338 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQR------SSGTSNSQKPVVLPTY 391
VH+++RSSA+KA+K+TE+YE++G+ LE LAKPQA+++ S G + + P V PT+
Sbjct: 336 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 395
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/300 (58%), Positives = 242/300 (80%), Gaps = 10/300 (3%)
Query: 100 DEVEKKKHAELLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGK 159
D+ +++K++ LL+LPPHGSEV+IGG+ +V EEDLR C+ +GE+ EVR+MK ++SG+ K
Sbjct: 98 DDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSK 157
Query: 160 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 219
GYAFVAFKTK++A +AIEEL++ EFKGK I+CS S+ K+RLFIGNIPK WT ++ +KV+
Sbjct: 158 GYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIE 217
Query: 220 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAD 279
DVGPGV +IEL+KD ++ RNRGFAF+ YYN+ACA+YSRQKM +SNFKLE NAPTV+WAD
Sbjct: 218 DVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWAD 277
Query: 280 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGF 337
P++S S+A +QVKA+YVKN+PEN + + LK+LF+ HG++TK+V PP K G K FGF
Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGF 335
Query: 338 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQR------SSGTSNSQKPVVLPTY 391
VH+++RSSA+KA+K+TE+YE++G+ LE LAKPQA+++ S G + + P V PT+
Sbjct: 336 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 395
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/300 (56%), Positives = 235/300 (78%), Gaps = 18/300 (6%)
Query: 100 DEVEKKKHAELLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGK 159
D+ +++K++ LL+LPPHGSEV+IGG+ +V EEDLR C+ +GE+ EVR+MK ++SG+ K
Sbjct: 78 DDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSK 137
Query: 160 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 219
GYAFVAFKTK++A +AIEEL++ EFKGK I+CS S+ K+RLFIGNIPK WT ++ +KV+
Sbjct: 138 GYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIE 197
Query: 220 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAD 279
DVGPG D ++ RNRGFAF+ YYN+ACA+YSRQKM +SNFKLE NAPTV+WAD
Sbjct: 198 DVGPG--------DPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWAD 249
Query: 280 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGF 337
P++S S+A +QVKA+YVKN+PEN + + LK+LF+ HG++TK+V PP K G K FGF
Sbjct: 250 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGF 307
Query: 338 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQR------SSGTSNSQKPVVLPTY 391
VH+++RSSA+KA+K+TE+YE++G+ LE LAKPQA+++ S G + + P V PT+
Sbjct: 308 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 367
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 360 bits (924), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 169/300 (56%), Positives = 234/300 (78%), Gaps = 10/300 (3%)
Query: 100 DEVEKKKHAELLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGK 159
D+ +++K++ LL+LPPHGSEV+IGG+ +V EEDLR C+ +GE+ EVR+MK ++SG+ K
Sbjct: 98 DDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSK 157
Query: 160 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 219
GYAFVAFKTK++A +AIEEL++ EFK S +RLFIGNIPK WT ++ +KV+
Sbjct: 158 GYAFVAFKTKDVAQKAIEELHSKEFKASSTANCSLSLSNRLFIGNIPKNWTEDEFRKVIE 217
Query: 220 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAD 279
DVGPGV +IEL+KD ++ RNRGFAF+ YYN+ACA+YSRQKM +SNFKLE NAPTV+WAD
Sbjct: 218 DVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWAD 277
Query: 280 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGF 337
P++S S+A +QVKA+YVKN+PEN + + LK+LF+ HG++TK+V PP K G K FGF
Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGF 335
Query: 338 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQR------SSGTSNSQKPVVLPTY 391
VH+++RSSA+KA+K+TE+YE++G+ LE LAKPQA+++ S G + + P V PT+
Sbjct: 336 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 395
>AT5G28390.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:10342024-10342997 REVERSE LENGTH=180
Length = 180
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 97/131 (74%), Gaps = 5/131 (3%)
Query: 261 MSNSNFKLENNAPTVSWADPRNSE--SSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKI 318
MSN +FKL++NAPTVSWA+ R+ S+ SQVKA+Y+KNLP +ITQ+ LK LFEHHGKI
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 319 TKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQRSSG 378
KVV+PPAK G+E SR+GFVH+++R+S M+ALKNTE+YEID L A ++G
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDASAYSQPLM--HAGGHAAG 118
Query: 379 TSNSQKPVVLP 389
S P++LP
Sbjct: 119 -GMSMMPIMLP 128
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 145/277 (52%), Gaps = 20/277 (7%)
Query: 119 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
E+++G + SEEDL+ VGEV+EVRI+K ++ + KG AF+ F T E A +A++E
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 179 LNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVG-PGVISIELLKDLQSS 237
L + GKK ++SQ LF+GNI K WT E +++ + G + I L++D +
Sbjct: 275 LKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNV 334
Query: 238 GRNRGFAFIEYYNHACAEYSRQKMSNSN--FKLENNAPTVSWADP-RNSESSAVSQVKAV 294
NRG+AF+E+ + + A + +++ + F +E A VS+ D + E ++QVK +
Sbjct: 335 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPA-KVSFTDSFLDLEDEIMAQVKTI 393
Query: 295 YVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTE 354
++ L + ++ ++ L + +GK+ KV L + FGFV F +A+ K
Sbjct: 394 FIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFIN 453
Query: 355 KYEI----DGKNLECSLAKP-----------QADQRS 376
E+ D + L++P ++DQRS
Sbjct: 454 NSELGEGEDKAKVRARLSRPLQKAGKGRQSSRSDQRS 490
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 135/274 (49%), Gaps = 26/274 (9%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
+ +Y+G + NV++ L +G V VR+ + + GY +V F + A++AI+
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 178 ELNNSEFKGKKIKCSSSQAKHR-----------LFIGNIPKKWTVEDMKKVVADVGPGVI 226
ELN GK I+ S HR +FI N+ + + + + G ++
Sbjct: 96 ELNYIPLYGKPIRVMYS---HRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIV 151
Query: 227 SIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNSESS 286
S ++ D SSG+++G+ F++Y N A+ + +K+ N L N+ R E
Sbjct: 152 SCKVAVD--SSGQSKGYGFVQYANEESAQKAIEKL---NGMLLNDKQVYVGPFLRRQERD 206
Query: 287 AV---SQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSR-FGFVHFSD 342
+ ++ VYVKNL E+ T D LK F +GKIT V+ K G+ KS+ FGFV+F +
Sbjct: 207 STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGEGKSKGFGFVNFEN 264
Query: 343 RSSAMKALKNTEKYEIDGKNLECSLAKPQADQRS 376
A +A+++ ++ D K A+ ++++ +
Sbjct: 265 ADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 126/282 (44%), Gaps = 33/282 (11%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
++I + ++ + L S G + ++ SG+ KGY FV + +E A +AIE+L
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKV-AVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 180 NNSEFKGKKIKCS---------SSQAKHR---LFIGNIPKKWTVEDMKKVVADVGPGVIS 227
N K++ S+ K + +++ N+ + T +D+K + G + S
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITS 243
Query: 228 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF------------KLENNAPTV 275
++KD G+++GF F+ + N A + + ++ F K E
Sbjct: 244 AVVMKD--GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELR 301
Query: 276 SWADPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKIT--KVVLPPAKAGQEKS 333
+ E++ Q +YVKNL +I+ + LK++F G +T KV+ P G K
Sbjct: 302 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP--NGTSKG 359
Query: 334 RFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQR 375
GFV F+ A +A+ I+ K L ++A+ + D+R
Sbjct: 360 S-GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRR 400
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 128/270 (47%), Gaps = 21/270 (7%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
S +Y+G + +V+E L V V +R+ + + GYA+V F E AS+A+E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCR-DLTHRSLGYAYVNFANPEDASRAME 117
Query: 178 ELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIE 229
LN + + + I+ S K +FI N+ + + + + G ++S +
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TILSCK 176
Query: 230 LLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPT-----VSWADPRNSE 284
+ D+ GR++G+ F+++ A+ + K+ N L N+ V D SE
Sbjct: 177 VAMDV--VGRSKGYGFVQFEKEETAQAAIDKL---NGMLLNDKQVFVGHFVRRQDRARSE 231
Query: 285 SSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRS 344
S AV VYVKNLP+ IT D LKK F +G I+ V+ ++G +S FGFV+F
Sbjct: 232 SGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSPE 290
Query: 345 SAMKALKNTEKYEIDGKNLECSLAKPQADQ 374
+A A++ + L A+ ++D+
Sbjct: 291 AAAVAVEKMNGISLGEDVLYVGRAQKKSDR 320
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 122/278 (43%), Gaps = 35/278 (12%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
V+I + ++ + L S G + ++ G KGY FV F+ +E A AI++L
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKV-AMDVVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 180 NNSEFKGKKIKCS---SSQAKHR-----------LFIGNIPKKWTVEDMKKVVADVGPGV 225
N K++ Q + R +++ N+PK+ T +++KK G +
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYG-DI 265
Query: 226 ISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADP----- 280
S ++KD SG +R F F+ + + A + +KM+ L + V A
Sbjct: 266 SSAVVMKD--QSGNSRSFGFVNFVSPEAAAVAVEKMNG--ISLGEDVLYVGRAQKKSDRE 321
Query: 281 ----RNSESSAVS-----QVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQE 331
R E +S Q +Y+KNL +++ + LK++F +G +T + G
Sbjct: 322 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 381
Query: 332 KSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK 369
+ FGFV +S+ A+ A+K I K L +LA+
Sbjct: 382 RG-FGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 418
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 128/270 (47%), Gaps = 21/270 (7%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
S +Y+G + +V+E L V V +R+ + + GYA+V F E AS+A+E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCR-DLTHRSLGYAYVNFANPEDASRAME 117
Query: 178 ELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIE 229
LN + + + I+ S K +FI N+ + + + + G ++S +
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TILSCK 176
Query: 230 LLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPT-----VSWADPRNSE 284
+ D+ GR++G+ F+++ A+ + K+ N L N+ V D SE
Sbjct: 177 VAMDV--VGRSKGYGFVQFEKEETAQAAIDKL---NGMLLNDKQVFVGHFVRRQDRARSE 231
Query: 285 SSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRS 344
S AV VYVKNLP+ IT D LKK F +G I+ V+ ++G +S FGFV+F
Sbjct: 232 SGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSPE 290
Query: 345 SAMKALKNTEKYEIDGKNLECSLAKPQADQ 374
+A A++ + L A+ ++D+
Sbjct: 291 AAAVAVEKMNGISLGEDVLYVGRAQKKSDR 320
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 122/278 (43%), Gaps = 35/278 (12%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
V+I + ++ + L S G + ++ G KGY FV F+ +E A AI++L
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKV-AMDVVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 180 NNSEFKGKKIKCS---SSQAKHR-----------LFIGNIPKKWTVEDMKKVVADVGPGV 225
N K++ Q + R +++ N+PK+ T +++KK G +
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYG-DI 265
Query: 226 ISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADP----- 280
S ++KD SG +R F F+ + + A + +KM+ L + V A
Sbjct: 266 SSAVVMKD--QSGNSRSFGFVNFVSPEAAAVAVEKMNG--ISLGEDVLYVGRAQKKSDRE 321
Query: 281 ----RNSESSAVS-----QVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQE 331
R E +S Q +Y+KNL +++ + LK++F +G +T + G
Sbjct: 322 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 381
Query: 332 KSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK 369
+ FGFV +S+ A+ A+K I K L +LA+
Sbjct: 382 RG-FGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 418
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 131/265 (49%), Gaps = 36/265 (13%)
Query: 120 VYIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
+Y+G ++ +V+E+DL F +V VS V + + +G+ YA++ F + AS A+
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVS-VHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 179 LNNSEFKGKKIKCSSSQ---AKHR--------LFIGNIPKKWTVEDMKKVVADVGPGVIS 227
LN+S+ KGK ++ SQ A R L++ N+ T ++++ G S
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFG----S 137
Query: 228 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF--------KLENNAPTVSWAD 279
I K ++ +G+++GF F+++ A +R + S K N + A
Sbjct: 138 ILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAG 197
Query: 280 PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSR-FGFV 338
++S + VYVKNL E +T D L LF +G ++ VV+ + G +SR FGFV
Sbjct: 198 NQDSTN--------VYVKNLIETVTDDCLHTLFSQYGTVSSVVV--MRDGMGRSRGFGFV 247
Query: 339 HFSDRSSAMKALKNTEKYEIDGKNL 363
+F + +A KA+++ ++ K L
Sbjct: 248 NFCNPENAKKAMESLCGLQLGSKKL 272
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 136/283 (48%), Gaps = 35/283 (12%)
Query: 118 SEVYIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAI 176
+ +Y+ + ++++ L R+FC G + ++++ E+G+ KG+ FV F T++ A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFC-PFGSILSCKVVE--ENGQSKGFGFVQFDTEQSAVSAR 168
Query: 177 EELNNSEFKGKKI------------KCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPG 224
L+ S GKK+ + +Q +++ N+ + T + + + + G
Sbjct: 169 SALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT- 227
Query: 225 VISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNSE 284
V S+ +++D GR+RGF F+ + N A+ + + + +L + V A ++
Sbjct: 228 VSSVVVMRD--GMGRSRGFGFVNFCNPENAKKAMESLCG--LQLGSKKLFVGKALKKDER 283
Query: 285 SSAVSQVKA-------------VYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQE 331
+ Q + +YVKNL E++ + L+++F +G+I + + G+
Sbjct: 284 REMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRS 343
Query: 332 KSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQ 374
K FGFV FS+ + +A + + +DGK + +A+ + D+
Sbjct: 344 KG-FGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR 385
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 122/254 (48%), Gaps = 20/254 (7%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
+Y+G + NV++ L + V +V VR+ + + GY +V + + A +A+++L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 180 NNSEFKGKKIKCS--------SSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELL 231
N S GK I+ + LF+ N+ K + + + + G ++S ++
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT-IVSCKVA 166
Query: 232 KDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNSE-SSAVSQ 290
D G++RG+ F+++ A+ + +K+ N K+ N+ R E SA +
Sbjct: 167 TD--HMGQSRGYGFVQFDTEDSAKNAIEKL---NGKVLNDKQIFVGPFLRKEERESAADK 221
Query: 291 VKA--VYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSR-FGFVHFSDRSSAM 347
+K VYVKNL E T D LK F +G I+ V+ + G KSR FGFV+F + A
Sbjct: 222 MKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVV--MRDGDGKSRCFGFVNFENPEDAA 279
Query: 348 KALKNTEKYEIDGK 361
+A++ + D K
Sbjct: 280 RAVEALNGKKFDDK 293
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 112/266 (42%), Gaps = 30/266 (11%)
Query: 156 GEGKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHR------------LFIG 203
G+ +GY FV F T++ A AIE+LN K+I K +++
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVK 230
Query: 204 NIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSN 263
N+ + T +++K G + S +++D G++R F F+ + N A + + ++
Sbjct: 231 NLSEATTDDELKTTFGQYG-SISSAVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNG 287
Query: 264 SNF------------KLENNAPTVSWADPRNSESSAVSQVKAVYVKNLPENITQDSLKKL 311
F K E + +S+ +YVKNL + +T + L++L
Sbjct: 288 KKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLREL 347
Query: 312 FEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQ 371
F G IT + +G K GFV FS S A + L + GK L +LA+ +
Sbjct: 348 FAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 372 ADQRS--SGTSNSQKPVVLPTYPHRL 395
++R+ + +P +P R+
Sbjct: 407 EERRAKLQAQFSQMRPAFIPGVGPRM 432
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 119/257 (46%), Gaps = 22/257 (8%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
+ +Y+G + V++ L G+V VR+ + + GY +V + T + AS+A+
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 178 ELNNSEFKGKKIKCSSS--------QAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIE 229
ELN G+ I+ S +FI N+ K + + + + GP ++S +
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILSCK 163
Query: 230 LLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNS--NFKLENNAPTVS--WADPRNSES 285
+ D SG+++G+ F++Y A+ + K++ N K P V DP S
Sbjct: 164 VAVD--PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDP----S 217
Query: 286 SAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSR-FGFVHFSDRS 344
+ VYVKNL E+++ + L K+F G T V+ + G+ KS+ FGFV+F +
Sbjct: 218 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI--MRDGEGKSKGFGFVNFENSD 275
Query: 345 SAMKALKNTEKYEIDGK 361
A +A+ D K
Sbjct: 276 DAARAVDALNGKTFDDK 292
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 129/298 (43%), Gaps = 35/298 (11%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
++I + ++ + L + G + ++ SG+ KGY FV + T E A AI++L
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKV-AVDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 180 NNSEFKGKKIKC-----------SSSQAKH-RLFIGNIPKKWTVEDMKKVVADVGPGVIS 227
N K++ S + K +++ N+ + + E++ KV + G S
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGV-TTS 252
Query: 228 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF------------KLENNAPTV 275
+++D G+++GF F+ + N A + ++ F K E
Sbjct: 253 CVIMRD--GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELK 310
Query: 276 SWADPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKIT--KVVLPPAKAGQEKS 333
+ E++ SQ +YVKNL E++T D L++ F G IT KV+ P+ +
Sbjct: 311 QKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGS- 369
Query: 334 RFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQ--RSSGTSNSQKPVVLP 389
GFV FS A +A+ I K L +LA+ + D+ R + +PV +P
Sbjct: 370 --GFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMP 425
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 119/257 (46%), Gaps = 22/257 (8%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
+ +Y+G + V++ L G+V VR+ + + GY +V + T + AS+A+
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 178 ELNNSEFKGKKIKCSSS--------QAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIE 229
ELN G+ I+ S +FI N+ K + + + + GP ++S +
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILSCK 163
Query: 230 LLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNS--NFKLENNAPTVS--WADPRNSES 285
+ D SG+++G+ F++Y A+ + K++ N K P V DP S
Sbjct: 164 VAVD--PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDP----S 217
Query: 286 SAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSR-FGFVHFSDRS 344
+ VYVKNL E+++ + L K+F G T V+ + G+ KS+ FGFV+F +
Sbjct: 218 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI--MRDGEGKSKGFGFVNFENSD 275
Query: 345 SAMKALKNTEKYEIDGK 361
A +A+ D K
Sbjct: 276 DAARAVDALNGKTFDDK 292
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 129/298 (43%), Gaps = 35/298 (11%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
++I + ++ + L + G + ++ SG+ KGY FV + T E A AI++L
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKV-AVDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 180 NNSEFKGKKIKC-----------SSSQAKH-RLFIGNIPKKWTVEDMKKVVADVGPGVIS 227
N K++ S + K +++ N+ + + E++ KV + G S
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGV-TTS 252
Query: 228 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF------------KLENNAPTV 275
+++D G+++GF F+ + N A + ++ F K E
Sbjct: 253 CVIMRD--GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELK 310
Query: 276 SWADPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKIT--KVVLPPAKAGQEKS 333
+ E++ SQ +YVKNL E++T D L++ F G IT KV+ P+ +
Sbjct: 311 QKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGS- 369
Query: 334 RFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQ--RSSGTSNSQKPVVLP 389
GFV FS A +A+ I K L +LA+ + D+ R + +PV +P
Sbjct: 370 --GFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMP 425
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 134/286 (46%), Gaps = 39/286 (13%)
Query: 120 VYIGGIANNVSEED-LRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
++IG + + E + VF QS GE + ++++ K +G+ +GY F+ F + +A + ++
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQS-GEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 179 LNNSEFKG--KKIKCSSSQA------------KHRLFIGNIPKKWTVEDMKKVVADVGPG 224
N + + + + +QA H +F+G++ + T + +V
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGS 180
Query: 225 VISIELLKDLQSSGRNRGFAFIEYYN-----HACAEYSRQKMSNSNFKL----ENNAPTV 275
V +++ D +++GR++G+ F+ + + A E + Q S ++ NA +
Sbjct: 181 VKGAKVVLD-RTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPM 239
Query: 276 SWADPRNSESSAVS----QVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQE 331
A +N++ + ++V L N+T D LK +F G++ V +PP K
Sbjct: 240 QPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGK---- 295
Query: 332 KSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKP---QADQ 374
R GFV +++++SA AL ++ G+++ S + Q+DQ
Sbjct: 296 --RCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQ 339
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 125/283 (44%), Gaps = 33/283 (11%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
++IG + + E L GE+ ++++ K++G+ +GY F+ F + A + ++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 180 NNSE--------FKGKKIKCSSSQAK-----HRLFIGNIPKKWTVEDMKKVVADVGPGVI 226
NN+ F+ SS + + +F+G++ T + + P V
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 227 SIELLKDLQSSGRNRGFAFIEYYN-----HACAEYSRQKMSNSNFKLENNAPTVSWADPR 281
+++ D + +GR +G+ F+ + + A E + S ++ A R
Sbjct: 184 GAKVVID-RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
Query: 282 NSESSAVSQV--------KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKS 333
+S S+ + V V+V L ++T D LK +F +G+I V +P K
Sbjct: 243 DSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK------ 296
Query: 334 RFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQRS 376
R GFV FS++S A +AL+ ++ G + S + ++++S
Sbjct: 297 RCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQS 339
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 41/288 (14%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
++I + ++ + L S G + ++ +G KGY FV F+ +E A AI++L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKV-AMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 180 NNSEFKGKKIKCS---SSQAKHR-----------LFIGNIPKKWTVEDMKKVVADVGPGV 225
N K++ Q + R +++ N+PK+ ++++K G V
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG--V 254
Query: 226 ISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNSES 285
IS ++ QS G +R F F+ + A + +KM+ L ++ V A ++
Sbjct: 255 ISSAVVMRDQS-GNSRCFGFVNFECTEAAASAVEKMNG--ISLGDDVLYVGRAQKKSERE 311
Query: 286 SAV--------------SQVKAVYVKNLPENITQDSLKKLFEHHGKIT--KVVLPPAKAG 329
+ SQ +Y+KNL +++ + LK++F +G +T KV+L P
Sbjct: 312 EELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP---- 367
Query: 330 QEKSR-FGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQRS 376
Q SR FGFV +S+ A++AL I K L +LA+ + D+R+
Sbjct: 368 QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRA 415
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 115/247 (46%), Gaps = 21/247 (8%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
S +Y G + V+E L + V V VR+ + ++ GYA++ F A +A+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCR-DQNRRSLGYAYINFSNPNDAYRAME 107
Query: 178 ELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIE 229
LN + + I+ S K +FI N+ + + + + G ++S +
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFG-TILSCK 166
Query: 230 LLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPT-----VSWADPRNSE 284
+ D+ +GR++G+ F+++ A+ + K+ N L N+ + + E
Sbjct: 167 VAMDV--TGRSKGYGFVQFEKEESAQAAIDKL---NGMLMNDKQVFVGHFIRRQERARDE 221
Query: 285 SSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRS 344
++ + VYVKNLP+ I +D L+K F G I+ V+ ++G + FGFV+F
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRC-FGFVNFECTE 280
Query: 345 SAMKALK 351
+A A++
Sbjct: 281 AAASAVE 287
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 36/208 (17%)
Query: 115 PHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQ 174
P + VY+ + + E++LR G +S +M+ +SG + + FV F+ E A+
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMR-DQSGNSRCFGFVNFECTEAAAS 284
Query: 175 AIEELNNSEFKGKKIKCSSSQAKHR------------------------LFIGNIPKKWT 210
A+E++N + +Q K L++ N+
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVD 344
Query: 211 VEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLEN 270
E +K++ ++ G V S +++ L G +RGF F+ Y N E + + +S N K+
Sbjct: 345 DEKLKEMFSEYG-NVTSSKVM--LNPQGMSRGFGFVAYSN---PEEALRALSEMNGKMIG 398
Query: 271 NAPT-VSWA----DPRNSESSAVSQVKA 293
P ++ A D R + SQ++A
Sbjct: 399 RKPLYIALAQRKEDRRAHLQALFSQIRA 426
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 128/278 (46%), Gaps = 27/278 (9%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
V++ + +V+ L+ + G + ++ E G+ +GY FV F+ ++ A AI+ L
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATL-EDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 180 NNS----------EFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIE 229
N++ +F K + + L++ N+ + + +++ A+ G ++S+
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGK-IVSLA 231
Query: 230 LLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF------------KLENNAPTVSW 277
+ KD + RG+AF+ + N A + + ++ + F K E
Sbjct: 232 IAKD--ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQ 289
Query: 278 ADPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGF 337
++ E +++V +YVKN+ +T++ L+K F G IT L + G+ K FGF
Sbjct: 290 FKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKG-FGF 348
Query: 338 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQR 375
V FS A+ A+K GK L ++A+ + D++
Sbjct: 349 VCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRK 386
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 123/272 (45%), Gaps = 22/272 (8%)
Query: 115 PHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQ 174
P + +Y+G + +V+E L ++ VR+ K SG Y + F +++ A+
Sbjct: 21 PVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANL 80
Query: 175 AIEELNNSEFKGKKIKCSSS--------QAKHRLFIGNIPKKWT---VEDMKKVVADVGP 223
AIE+ NNS GK I+ S +F+ N+P+ T ++DM K ++
Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVS 140
Query: 224 GVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNS 283
+ L+D G++RG+ F+++ A + Q ++++ + + V +
Sbjct: 141 --CKVATLED----GKSRGYGFVQFEQEDAAHAAIQTLNST--IVADKEIYVGKFMKKTD 192
Query: 284 ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSR-FGFVHFSD 342
+ +Y+KNL ++++D L++ F GKI V L AK R + FV+F +
Sbjct: 193 RVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKI--VSLAIAKDENRLCRGYAFVNFDN 250
Query: 343 RSSAMKALKNTEKYEIDGKNLECSLAKPQADQ 374
A +A + + K L A+ +A++
Sbjct: 251 PEDARRAAETVNGTKFGSKCLYVGRAQKKAER 282
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 62/307 (20%)
Query: 114 PPHGS-----------EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYA 162
PP GS ++IG + V E L GE+ V++++ K +G+ +GY
Sbjct: 9 PPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYG 68
Query: 163 FVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAK------------HRLFIGNIPKKWT 210
F+ F + A + ++ N ++ G ++ + A H +F+G++ T
Sbjct: 69 FIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVT 128
Query: 211 VEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYY-----NHACAEYSRQKMSNSN 265
+++ V +++ D S+GR++G+ F+++ N A AE + S
Sbjct: 129 DYLLQETFRVHYSSVRGAKVVTD-PSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRP 187
Query: 266 FKLEN-----------------------NAPTVSWADPRNSESSAVSQVKAVYVKNLPEN 302
++ AP ++ P S+ + + + V NL +N
Sbjct: 188 MRISAATPKKNVGVQQQYVTKVTVPSAVAAPVQAYVAPPESDVTCTT----ISVANLDQN 243
Query: 303 ITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 362
+T++ LKK F G++ V +P K +G+V F R SA +A++ + I +
Sbjct: 244 VTEEELKKAFSQLGEVIYVKIPATKG------YGYVQFKTRPSAEEAVQRMQGQVIGQQA 297
Query: 363 LECSLAK 369
+ S +K
Sbjct: 298 VRISWSK 304
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 127/307 (41%), Gaps = 58/307 (18%)
Query: 114 PPHGS-----------EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYA 162
PP GS ++IG + V E L GE+ V++++ K +G+ +GY
Sbjct: 9 PPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYG 68
Query: 163 FVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAK------------HRLFIGNIPKKWT 210
F+ F + A + ++ N ++ G ++ + A H +F+G++ T
Sbjct: 69 FIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVT 128
Query: 211 VEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYY-----NHACAEYSRQKMSNSN 265
+++ V +++ D S+GR++G+ F+++ N A AE + S
Sbjct: 129 DYLLQETFRVHYSSVRGAKVVTD-PSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRP 187
Query: 266 FKLENNAP----------TVSWADPRNSESSAVSQVKA-------------VYVKNLPEN 302
++ P P S+ + V+A + V NL +N
Sbjct: 188 MRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQN 247
Query: 303 ITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 362
+T++ LKK F G++ V +P K +G+V F R SA +A++ + I +
Sbjct: 248 VTEEELKKAFSQLGEVIYVKIPATKG------YGYVQFKTRPSAEEAVQRMQGQVIGQQA 301
Query: 363 LECSLAK 369
+ S +K
Sbjct: 302 VRISWSK 308
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/282 (18%), Positives = 126/282 (44%), Gaps = 32/282 (11%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
++IG + + E L GE + ++++ K++G +GY F+ F A + ++
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 180 NNSEFK-------------GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVI 226
N + G + + +H +F+G++ T + + V V
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVK 201
Query: 227 SIELLKDLQSSGRNRGFAFIEYYN-----HACAEYSRQKMSNSNFKL---ENNAPTV--- 275
+++ D +++GR++G+ F+ + + A E + Q S+ + N P
Sbjct: 202 GAKVVND-RTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQP 260
Query: 276 -SWADPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSR 334
S+ + + + + ++V + +++T+D LK +F G++ V +P K R
Sbjct: 261 ASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK------R 314
Query: 335 FGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQRS 376
GFV +++R+ A +AL ++ G+++ S + +++++
Sbjct: 315 CGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQT 356
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 18/193 (9%)
Query: 100 DEVEKKKHAELLALPPHG--SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGE 157
+E EK A + PP +++Y G + NV L Q V ++ +++G+
Sbjct: 65 EEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQ 124
Query: 158 GKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSS------------QAKHRLFIGNI 205
+G+AFV E + I+ L+ +E+ G+ +K + + + +H+LF+GN+
Sbjct: 125 SRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNL 184
Query: 206 PKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSN 265
T E + + G V+ ++ D +GR+RG+ F+ Y + A E + + +
Sbjct: 185 SWTVTSESLAGAFRECG-DVVGARVVFD-GDTGRSRGYGFVCYSSKAEMETALESL--DG 240
Query: 266 FKLENNAPTVSWA 278
F+LE A V+ A
Sbjct: 241 FELEGRAIRVNLA 253
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 126/291 (43%), Gaps = 53/291 (18%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
VY+G I V+E L+ G V ++++ ++S Y FV + + A AI L
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILSL 111
Query: 180 NNSEFKGKKIKCSSSQAKHR---------LFIGNIPKKWTVEDMKKVVADVGPGVISIEL 230
N G+ IK + + A + +F+G++ + T + M V P +
Sbjct: 112 NGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVT-DAMLFTCFSVYPTCSDARV 170
Query: 231 LKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWA--------DPRN 282
+ D Q +GR+RGF F+ + N A+ + +++ L + +WA D ++
Sbjct: 171 MWD-QKTGRSRGFGFVSFRNQQDAQTAIDEITGK--WLGSRQIRCNWATKGATSGEDKQS 227
Query: 283 SESSAV--------------------SQVKAVYVKNLPENITQDSLKKLFEHHGKITKVV 322
S+S +V +Q VYV NL ++Q L + F G V
Sbjct: 228 SDSKSVVELTSGDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLG---AGV 284
Query: 323 LPPAKAGQEKSRFGFVHFSDRSSAMKALK--NTEKYEIDGKNLECSL-AKP 370
+ + ++K FGFV +S A A++ NT Y + G+ ++CS +KP
Sbjct: 285 IEEVRVQRDKG-FGFVRYSTHVEAALAIQMGNTHSY-LSGRQMKCSWGSKP 333
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 108/250 (43%), Gaps = 33/250 (13%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
++IG + + E L GE+ ++++ K++G+ +GY F+ F + A + ++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 180 NNSE--------FKGKKIKCSSSQAK-----HRLFIGNIPKKWTVEDMKKVVADVGPGVI 226
NN+ F+ SS + + +F+G++ T + + P V
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 227 SIELLKDLQSSGRNRGFAFIEYYN-----HACAEYSRQKMSNSNFKLENNAPTVSWADPR 281
+++ D + +GR +G+ F+ + + A E + S ++ A R
Sbjct: 184 GAKVVID-RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
Query: 282 NSESSAVSQV--------KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKS 333
+S S+ + V V+V L ++T D LK +F +G+I V +P K
Sbjct: 243 DSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK------ 296
Query: 334 RFGFVHFSDR 343
R GFV FS++
Sbjct: 297 RCGFVQFSEK 306
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 92/184 (50%), Gaps = 22/184 (11%)
Query: 114 PPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELAS 173
PP +++++G + +V + L + + G V ++ +++ + +G+ FV T E A
Sbjct: 109 PPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAE 168
Query: 174 QAIEELNNSEFKGKKIKCSSS--------------QAKHRLFIGNIPKKWTVED--MKKV 217
+A+E+ N+ E G+++ + + A R+++GN+P W V+ ++++
Sbjct: 169 KAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLP--WDVDSGRLERL 226
Query: 218 VADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSW 277
++ G V+ ++ D + +GR+RGF F++ N + + N LE A V+
Sbjct: 227 FSEHGK-VVDARVVSD-RETGRSRGFGFVQMSNENEVNVAIAALDGQN--LEGRAIKVNV 282
Query: 278 ADPR 281
A+ R
Sbjct: 283 AEER 286
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 199 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 258
+LF+GN+P + + + G IS E++ + + + ++RGF F+ AE +
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEIS-EVIYN-RDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 259 QKMSNSNFKLENNAPTVSWADPRNSESSAVSQVK----AVYVKNLPENITQDSLKKLFEH 314
+K ++ F++ TV+ A PR S +V +YV NLP ++ L++LF
Sbjct: 172 EKFNS--FEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 315 HGKITKV-VLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLE 364
HGK+ V+ + G+ + FGFV S+ + A+ +DG+NLE
Sbjct: 230 HGKVVDARVVSDRETGRSRG-FGFVQMSNENEVNVAIA-----ALDGQNLE 274
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 121/283 (42%), Gaps = 48/283 (16%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE-- 177
+++G + + + E L GEVS V++++ K + + +GY FV F ++ A + ++
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 178 ------------ELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGV 225
+N + F + + + +F+G++ T + + +D P V
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 226 ISIELLKDLQSSGRNRGFAFIEYYN-----HACAEYSRQKMSNSNFKLENNAPTVSWADP 280
S +++ D ++GR++G+ F+ + + A E + SN ++ P + A+
Sbjct: 230 KSAKVVID-SNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQ 288
Query: 281 RNSESSAV---------------------SQVKAVYVKNLPENITQDSLKKLFEHHGKIT 319
+ S AV S ++V + ++ + L++ F G++
Sbjct: 289 QQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVV 348
Query: 320 KVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 362
V +P K GFV F+DR SA A+++ I GKN
Sbjct: 349 SVKIPVGKG------CGFVQFADRKSAEDAIESLNGTVI-GKN 384
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 126/297 (42%), Gaps = 42/297 (14%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE-- 177
+++G + + + E L EVS V++++ K++ + +GY FV F ++ A +A++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 178 ------------ELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGV 225
LN + F + + S + +F+G++ + + + A P V
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 226 ISIELLKDLQSSGRNRGFAFIEYYN-----HACAEYSRQKMSNSNFKLENNAPTVSWADP 280
+++ D ++GR++G+ F+ + + A E + S+ ++ P + A
Sbjct: 241 KGAKVVID-SNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYG 299
Query: 281 RNSESSAV----------------SQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLP 324
+ + S A+ S ++V L ++T++ L + F G++ V +P
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 325 PAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQRSSGTSN 381
K GFV F++R SA +A+ N I + S + Q S + N
Sbjct: 360 VGKG------CGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGN 410
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 126/294 (42%), Gaps = 56/294 (19%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
VY+G I V+E L+ G V ++++ ++S Y FV + + A AI L
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILSL 111
Query: 180 NNSEFKGKKIKCSSSQAKHR---------LFIGNIPKKWTVEDMKKVVADVGPGVISIEL 230
N G+ IK + + A + +F+G++ + T + M V P +
Sbjct: 112 NGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVT-DAMLFTCFSVYPTCSDARV 170
Query: 231 LKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWA--------DPRN 282
+ D Q +GR+RGF F+ + N A+ + +++ L + +WA D ++
Sbjct: 171 MWD-QKTGRSRGFGFVSFRNQQDAQTAIDEITGK--WLGSRQIRCNWATKGATSGEDKQS 227
Query: 283 SESSAV-----------------------SQVKAVYVKNLPENITQDSLKKLFEHHGKIT 319
S+S +V +Q VYV NL ++Q L + F G
Sbjct: 228 SDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLG--- 284
Query: 320 KVVLPPAKAGQEKSRFGFVHFSDRSSAMKALK--NTEKYEIDGKNLECSL-AKP 370
V+ + ++K FGFV +S A A++ NT Y + G+ ++CS +KP
Sbjct: 285 AGVIEEVRVQRDKG-FGFVRYSTHVEAALAIQMGNTHSY-LSGRQMKCSWGSKP 336
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 193 SSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAF-----IE 247
SS+A R++IGNIP+ T E + K+V + G V ++++ D + SGR+R F F +E
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHG-AVEKVQVMYD-KYSGRSRRFGFATMKSVE 128
Query: 248 YYNHACAEYSRQKMSNSNFKLE-NNAPTVSWADP---RNSESSAVSQVKAVYVKNLPENI 303
N + + + K+ P S D ++ +S+ V VYV NL + +
Sbjct: 129 DANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTV 188
Query: 304 TQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFS---DRSSAMKALKNT 353
T++ L+ LF GK+ + + + FGFV FS D +A+ AL N+
Sbjct: 189 TKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNS 241
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 193 SSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAF-----IE 247
SS+A R++IGNIP+ T E + K+V + G V ++++ D + SGR+R F F +E
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHG-AVEKVQVMYD-KYSGRSRRFGFATMKSVE 128
Query: 248 YYNHACAEYSRQKMSNSNFKLE-NNAPTVSWADP---RNSESSAVSQVKAVYVKNLPENI 303
N + + + K+ P S D ++ +S+ V VYV NL + +
Sbjct: 129 DANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTV 188
Query: 304 TQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFS---DRSSAMKALKNT 353
T++ L+ LF GK+ + + + FGFV FS D +A+ AL N+
Sbjct: 189 TKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNS 241
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 199 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 258
+LFIG I E +K+ + G VI +LKD +++GR RGF F+ + + A AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGE-VIEAVILKD-RTTGRARGFGFVVFADPAVAEIVI 64
Query: 259 QKMSNSNFKLENNAPTVSWADPRN-------SESSAV-------SQVKAVYVKNLPENIT 304
+ N + +L V PR+ S SS++ + + ++V LP ++T
Sbjct: 65 TEKHNIDGRLVEAKKAV----PRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 305 QDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLE 364
+ K FE G T VV+ Q FGF+ + + K L T +E++GK +E
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT-FHELNGKMVE 179
Query: 365 CSLAKPQ 371
A P+
Sbjct: 180 VKRAVPK 186
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 24/153 (15%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
+++IGGI+ + +EE L+ + S GEV E I+K + +G +G+ FV F +A I
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVIT 65
Query: 178 ELNNSEFKGKKIK---------------CSSSQAK-------HRLFIGNIPKKWTVEDMK 215
E +N + + + K SS Q ++F+G +P T D K
Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 216 KVVADVGPGVISIELLKDLQSSGRNRGFAFIEY 248
G + ++ D + R RGF FI Y
Sbjct: 126 TYFEQFGT-TTDVVVMYDHNTQ-RPRGFGFITY 156
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 199 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 258
+LFIG I E +K+ + G VI +LKD +++GR RGF F+ + + A AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGE-VIEAVILKD-RTTGRARGFGFVVFADPAVAEIVI 64
Query: 259 QKMSNSNFKLENNAPTVSWADPRN-------SESSAV-------SQVKAVYVKNLPENIT 304
+ N + +L V PR+ S SS++ + + ++V LP ++T
Sbjct: 65 TEKHNIDGRLVEAKKAV----PRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 305 QDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLE 364
+ K FE G T VV+ Q FGF+ + + K L T +E++GK +E
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT-FHELNGKMVE 179
Query: 365 CSLAKPQ 371
A P+
Sbjct: 180 VKRAVPK 186
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 24/153 (15%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
+++IGGI+ + +EE L+ + S GEV E I+K + +G +G+ FV F +A I
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVIT 65
Query: 178 ELNNSEFKGKKIK---------------CSSSQAK-------HRLFIGNIPKKWTVEDMK 215
E +N + + + K SS Q ++F+G +P T D K
Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 216 KVVADVGPGVISIELLKDLQSSGRNRGFAFIEY 248
G + ++ D + R RGF FI Y
Sbjct: 126 TYFEQFGT-TTDVVVMYDHNTQ-RPRGFGFITY 156
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 131/288 (45%), Gaps = 41/288 (14%)
Query: 120 VYIGGIANNVSEEDLRVFCQSV--GEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
+++G + N + E L S E+ +++++ K +G +GY FV F++ ++A + ++
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 178 ELN-----NSEFKGKKIKCSSSQAKHRL---------FIGNIPKKWTVEDMKKVVADVGP 223
E N N++ + S S + RL F+G++ + + + ++ P
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYP 224
Query: 224 GVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNS 283
V + +++ D ++GR++G+ F+ + + E ++ + K + A + A PR +
Sbjct: 225 SVKAAKVVLDA-NTGRSKGYGFVRFGDE--NERTKAMTEMNGVKCSSRAMRIGPATPRKT 281
Query: 284 E----------SSAVSQVKA------VYVKNLPENITQDSLKKLFEHHGKITKVVLPPAK 327
S A ++ + ++V L ++T + LK+ F G+I V +P K
Sbjct: 282 NGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK 341
Query: 328 AGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQR 375
GFV F +R +A +AL+ I + + S + A+++
Sbjct: 342 G------CGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 383
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 199 RLFIGNIPKKWTVED--MKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEY 256
+LFIG I W ++ +++ ++ G V+ + ++++ +++GR RGF F+ + + A +
Sbjct: 7 KLFIGGI--SWDTDENLLREYFSNFGE-VLQVTVMRE-KATGRPRGFGFVAFSDPAVIDR 62
Query: 257 SRQK---MSNSNFKL------ENNAP---TVSWADPRNSESSAVSQVKAVYVKNLPENIT 304
Q + N + + E +P + ++ RN +S A + K ++V LP +T
Sbjct: 63 VLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALT 122
Query: 305 QDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLE 364
D + FE +G ++ V+ + Q FGFV F S L T ++++GK +E
Sbjct: 123 SDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKT-FHDLNGKQVE 181
Query: 365 CSLAKPQ 371
A P+
Sbjct: 182 VKRALPK 188
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 26/155 (16%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
+++IGGI+ + E LR + + GEV +V +M+ K +G +G+ FVAF + + ++
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
Query: 178 E---LNNSEFKGKKIKCSSSQA---------------------KHRLFIGNIPKKWTVED 213
+ ++N + K+ Q+ ++F+G +P T ++
Sbjct: 66 DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 214 MKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEY 248
+ GP +S ++ Q++ R RGF F+ +
Sbjct: 126 FRAYFETYGP--VSDAVIMIDQTTQRPRGFGFVSF 158
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 120/300 (40%), Gaps = 61/300 (20%)
Query: 114 PPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELAS 173
P VY+G I V+E L+ S G V ++++ +S Y FV + + A+
Sbjct: 55 PSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAA 110
Query: 174 QAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKD 233
AI LN G+ IK + + A + ++ T V D+ P V L +
Sbjct: 111 LAILSLNGRHLFGQPIKVNWAYATGQ-------REDTSSHFNIFVGDLSPEVTDATLYQS 163
Query: 234 L--------------QSSGRNRGFAFIEYYNHACAEYSRQKMSN---SNFKLENNAPT-- 274
Q +GR+RGF F+ + N A+ + +M+ S+ ++ N T
Sbjct: 164 FSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKG 223
Query: 275 -VSWADPRNSESSAV-----------------------SQVKAVYVKNLPENITQDSLKK 310
S D +S+ +V SQ VYV NL +TQ L +
Sbjct: 224 ATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHR 283
Query: 311 LFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALK--NTEKYEIDGKNLECSLA 368
F G V+ + ++K FGFV ++ A A++ NT+ Y + + ++CS
Sbjct: 284 YFHALG---AGVIEEVRVQRDKG-FGFVRYNTHPEAALAIQMGNTQPYLFN-RQIKCSWG 338
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 33/216 (15%)
Query: 176 IEELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVADVGPGVIS 227
+E LN + KGK ++ S+ + +F+ N+ + + + + + G V+S
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFG-KVLS 59
Query: 228 IELLKDLQSSGRNRGFAFIEYYNH-----ACAEYSRQKMSNSNFKLENNAPTVS---WAD 279
++ +D +SG ++G+ F+++Y+ AC ++ + N + + P VS W
Sbjct: 60 CKVARD--ASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHV---CPFVSRGQWDK 114
Query: 280 PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKS-RFGFV 338
R VYVKNL E T LK+LF G+IT V+ K G+ KS RFGFV
Sbjct: 115 SR--------VFTNVYVKNLVETATDADLKRLFGEFGEITSAVV--MKDGEGKSRRFGFV 164
Query: 339 HFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQ 374
+F +A+ A++ +D K L A+ + ++
Sbjct: 165 NFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR 200
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 86/177 (48%), Gaps = 8/177 (4%)
Query: 197 KHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEY 256
+ +L + IP + +K ++ G + ++KD +S+GR+RGF ++ + A AE
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFG-DLEDCIVMKD-RSTGRSRGFGYVTF---ASAED 56
Query: 257 SRQKMSNSNFKLENNAPTVSWADPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHG 316
++ + +F L N V A P+ +V ++V +P ++++ + FE +G
Sbjct: 57 AKNALKGEHF-LGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYG 115
Query: 317 KITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQAD 373
+IT + +P ++ GF+ FS S +++T +++ G + A P+ D
Sbjct: 116 EITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT--HDLGGTTVAVDRATPKED 170
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 86/177 (48%), Gaps = 8/177 (4%)
Query: 197 KHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEY 256
+ +L + IP + +K ++ G + ++KD +S+GR+RGF ++ + A AE
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFG-DLEDCIVMKD-RSTGRSRGFGYVTF---ASAED 56
Query: 257 SRQKMSNSNFKLENNAPTVSWADPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHG 316
++ + +F L N V A P+ +V ++V +P ++++ + FE +G
Sbjct: 57 AKNALKGEHF-LGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYG 115
Query: 317 KITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQAD 373
+IT + +P ++ GF+ FS S +++T +++ G + A P+ D
Sbjct: 116 EITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT--HDLGGTTVAVDRATPKED 170
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 10/168 (5%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
+ VY+GG+ +SEE L G V V + K + + + Y F+ ++++E A AI+
Sbjct: 25 ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84
Query: 178 ELNNSEFKGKKIKCS-SSQAKH------RLFIGNIPKKWTVEDMKKVVADVGPGVISIEL 230
LN + GK I+ + +SQ K LFIGN+ + + + G + ++
Sbjct: 85 VLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKI 144
Query: 231 LKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWA 278
++D +G +RGF FI Y + ++ + + M+ L N TVS+A
Sbjct: 145 MRD-PDTGNSRGFGFISYDSFEASDAAIESMTGQ--YLSNRQITVSYA 189
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 86/169 (50%), Gaps = 19/169 (11%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
+++GG+A + + GE+++ IMK +++G+ +G+ FV + + + I+
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-- 101
Query: 180 NNSEFKGKKIKC---------SSSQAK-HRLFIGNIPKKWTVEDMKKVVADVGPGVISIE 229
+N GK+++ SS+ K ++F+G IP ++ K+ G + +
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGE-LKEHQ 160
Query: 230 LLKDLQSSGRNRGFAFIEY-----YNHACAEYSRQKMSNSNFKLENNAP 273
+++D S+GR+RGF F+ Y +H A+ +R ++S + +++ P
Sbjct: 161 IMRD-HSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEP 208
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 6/173 (3%)
Query: 199 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 258
++F+G + ++ T + K G S+ ++KD + +G+ RGF F+ Y + + +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSV-IMKD-RKTGQPRGFGFVTYADSSVVD--- 97
Query: 259 QKMSNSNFKLENNAPTVSWADPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKI 318
K+ N + + PR S SS + K ++V +P ++ D K+ F G++
Sbjct: 98 -KVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGEL 156
Query: 319 TKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQ 371
+ + + FGFV + L + E+ G +E A+P+
Sbjct: 157 KEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 106 KHAELLALPPHGS---------EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESG 156
K E+ P GS ++++GGI ++V +++ + F GE+ E +IM+ +G
Sbjct: 109 KQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTG 168
Query: 157 EGKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAK 197
+G+ FV ++++++ + + N E G +++ ++ K
Sbjct: 169 RSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 26/209 (12%)
Query: 193 SSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHA 252
+S + RL++GN+P T ++ ++ + G V+ ++++ D + + R+RGF F+ +
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGT-VVDVQIVYD-KVTDRSRGFGFVTMGSIE 168
Query: 253 CAEYSRQKMSNSNF---KLENNAPTVSWADP--------RNSESSAVSQVKAVYVKNLPE 301
A+ + Q ++S ++ N P V R++ S V VY NL
Sbjct: 169 EAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGW 228
Query: 302 NITQDSLKKLF-EHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDG 360
N+T LK F + G + V+ G+ + FGF+ F + AL E++G
Sbjct: 229 NLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRG-FGFISFESAENVQSALATMNGVEVEG 287
Query: 361 KNLECSLAKPQADQRSSGTSNSQKPVVLP 389
+ L +LA S +KP V P
Sbjct: 288 RALRLNLA-----------SEREKPTVSP 305
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 25/152 (16%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
+Y+G + ++ +L G V +V+I+ K + +G+ FV + E A +A++
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 180 NNSEFKGKKIKC-----------------------SSSQAKHRLFIGNIPKKWTVEDMKK 216
N+S+ G+ +K S + H+++ GN+ T + +K
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 217 VVADVGPGVISIELLKDLQSSGRNRGFAFIEY 248
D PGV+ +++ + +++GR+RGF FI +
Sbjct: 238 AFGD-QPGVLGAKVIYE-RNTGRSRGFGFISF 267
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 26/221 (11%)
Query: 176 IEELNNSEFKGKKIKCSSSQAKH---------------RLFIGNIPKKWTVEDMKKVVAD 220
+E ++ G + Q KH +LF+G + + T E
Sbjct: 29 VETFDDRRNGGAAVDTGGIQMKHSVDHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGK 88
Query: 221 VGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADP 280
G V S+ + + +G RGF F+ + + A AE K+ + +++ + P
Sbjct: 89 FGEVVDSVIMTDRI--TGNPRGFGFVTFADSAVAE----KVLEEDHVIDDRKVDLKRTLP 142
Query: 281 R---NSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITK-VVLPPAKAGQEKSRFG 336
R +++ AVS+ + ++V LP + +D LK F +G I + ++ G+ + FG
Sbjct: 143 RGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRG-FG 201
Query: 337 FVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQRSS 377
FV F S + + + +E+ K +E A+P+ R +
Sbjct: 202 FVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDN 242
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 120/263 (45%), Gaps = 39/263 (14%)
Query: 143 EVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELN-----NSEFKGKKIKCSSSQAK 197
E+ V++++ K +G +GY FV F++ ++A + + E N N++ + S S +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 198 HRL---------FIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEY 248
RL F+G++ + + + ++ P V + +++ D ++GR++G+ F+ +
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDA-NTGRSKGYGFVRF 246
Query: 249 YNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNSE----------SSAVSQVKA----- 293
+ E ++ + K + A + A PR + + +++ +
Sbjct: 247 GDE--NERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNT 304
Query: 294 -VYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKN 352
++V L ++T + LK+ F G+I V +P K GFV F +R +A +AL+
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKG------CGFVQFVNRPNAEEALEK 358
Query: 353 TEKYEIDGKNLECSLAKPQADQR 375
I + + S + A+++
Sbjct: 359 LNGTVIGKQTVRLSWGRNPANKQ 381
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 121 YIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELN 180
++GG+A ++EDL+ G+V + +I+ +ESG +G+ FV FK ++ AIEE+N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 181 NSEFKGKKIKCSSSQAK 197
E G+ I + +Q++
Sbjct: 69 GKELDGRVITVNEAQSR 85
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 26/155 (16%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
++++GGI+ E+ LR + GEVS+ +M+ K +G +G+ FV F + + ++
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 178 ELNNSEFKGKKIKCSSSQAKH------------------------RLFIGNIPKKWTVED 213
E ++ + + +K + S+ + ++F+G +P T E+
Sbjct: 66 EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125
Query: 214 MKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEY 248
++ GP V + ++ D Q++ R RGF F+ +
Sbjct: 126 FRQYFEVYGP-VTDVAIMYD-QATNRPRGFGFVSF 158
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 15/185 (8%)
Query: 199 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 258
+LF+G I W ++ K G +S ++ + +GR RGF F+ + + + +
Sbjct: 7 KLFVGGI--SWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVL 64
Query: 259 Q------------KMSNSNFKLENNAPTVSWADPRNSESSAVSQVKAVYVKNLPENITQD 306
Q K + S + + + T + R+S A ++ K ++V LP +T +
Sbjct: 65 QEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDE 124
Query: 307 SLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECS 366
++ FE +G +T V + +A FGFV F D A+ ++ + +++ GK +E
Sbjct: 125 EFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDAVDSVLHKTFHDLSGKQVEVK 183
Query: 367 LAKPQ 371
A P+
Sbjct: 184 RALPK 188
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
S+++IGG+A ++ E+ LR GEV + R++ +E+G +G+ FV F + E AS AI+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 178 ELNNSEFKGKKIKC 191
L+ + G+ +K
Sbjct: 100 ALDGRDLHGRVVKV 113
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 90/182 (49%), Gaps = 10/182 (5%)
Query: 199 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 258
+LF+GN+ + + + G I+ E++ + ++ ++RGF F+ + AE +
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIA-EVIYNRETD-QSRGFGFVTMSSVDEAETAV 208
Query: 259 QKMSNSNFKLENNAPTVSWADPRNSESSAVSQVKA----VYVKNLPENITQDSLKKLFEH 314
+K + + L TV+ A PR S +V VYV NLP ++ L++LF
Sbjct: 209 EKFNR--YDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
Query: 315 HGKITKV-VLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQAD 373
HGK+ + V+ + G+ + FGFV SD +A+ + ++G+ + ++A+ +
Sbjct: 267 HGKVVEARVVYDRETGRSRG-FGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325
Query: 374 QR 375
+R
Sbjct: 326 RR 327
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 78/149 (52%), Gaps = 20/149 (13%)
Query: 114 PPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELAS 173
P +++++G +A +V+ + L + + G V ++ +E+ + +G+ FV + + A
Sbjct: 146 PSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
Query: 174 QAIEELNNSEFKGKKIKCSSSQAK--------------HRLFIGNIPKKWTVED--MKKV 217
A+E+ N + G+ + + + + R+++GN+P W V++ ++++
Sbjct: 206 TAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLP--WDVDNGRLEQL 263
Query: 218 VADVGPGVISIELLKDLQSSGRNRGFAFI 246
++ G V+ ++ D + +GR+RGF F+
Sbjct: 264 FSEHGK-VVEARVVYD-RETGRSRGFGFV 290
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 121 YIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
++GG+A ++EDL R F Q G+V + +I+ +ESG +G+ FV FK ++ AIEE+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQ-FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 180 NNSEFKGKKIKCSSSQ 195
N E G+ I + +Q
Sbjct: 68 NGKELDGRVITVNEAQ 83
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
V++G I + +EE LR C VG V R++ +E+G+ KGY F +K +E A A L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 180 NNSEFKGKKIKC 191
+ E G++++
Sbjct: 71 QSYEINGRQLRV 82
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 21/213 (9%)
Query: 190 KCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYY 249
K S+ +LFIG I E +++ G ++ +++D +++GR RGF FI +
Sbjct: 7 KMESASDLGKLFIGGISWDTDEERLQEYFGKYGD-LVEAVIMRD-RTTGRARGFGFIVFA 64
Query: 250 NHACAE---YSRQKMSNSNFK------------LENNAPTVSWADPRNSESSAVSQVKAV 294
+ + AE + + + L+ +A + P + + ++ K +
Sbjct: 65 DPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKI 124
Query: 295 YVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTE 354
+V LP +IT+ K F+ G I VV+ Q FGF+ F S L T
Sbjct: 125 FVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT- 183
Query: 355 KYEIDGKNLECSLAKPQADQRSSGTSNSQKPVV 387
+E++GK +E A P+ + SS T N + P++
Sbjct: 184 FHELNGKMVEVKRAVPK--ELSSTTPN-RSPLI 213
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 73/141 (51%), Gaps = 12/141 (8%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
+++IGG+ + + GE+++ IM+ + +G+ +G+ F+ F + + IE
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 178 ELNNSEFKGKKIK------CSSSQAK----HRLFIGNIPKKWTVEDMKKVVADVGPGVIS 227
+ + K +IK +Q+K ++F+G IP T +++K A G V+
Sbjct: 79 DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG-NVVE 137
Query: 228 IELLKDLQSSGRNRGFAFIEY 248
++++D +++ R+RGF F+ +
Sbjct: 138 HQVIRDHETN-RSRGFGFVIF 157
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 121 YIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELN 180
++GG+A ++EDL+ G+V + +I+ +ESG +G+ FV FK ++ AIEE+N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 181 NSEFKGKKIKCSSSQ 195
E G+ I + +Q
Sbjct: 69 GKELDGRVITVNEAQ 83
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 21/213 (9%)
Query: 190 KCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYY 249
K S+ +LFIG I E +++ G ++ +++D +++GR RGF FI +
Sbjct: 4 KMESASDLGKLFIGGISWDTDEERLQEYFGKYGD-LVEAVIMRD-RTTGRARGFGFIVFA 61
Query: 250 NHACAE---YSRQKMSNSNFK------------LENNAPTVSWADPRNSESSAVSQVKAV 294
+ + AE + + + L+ +A + P + + ++ K +
Sbjct: 62 DPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKI 121
Query: 295 YVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTE 354
+V LP +IT+ K F+ G I VV+ Q FGF+ F S L T
Sbjct: 122 FVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT- 180
Query: 355 KYEIDGKNLECSLAKPQADQRSSGTSNSQKPVV 387
+E++GK +E A P+ + SS T N + P++
Sbjct: 181 FHELNGKMVEVKRAVPK--ELSSTTPN-RSPLI 210
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 26/152 (17%)
Query: 119 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
+++IGGI+ SE+ LR + S GEV E IMK + +G +G+ FV F +A + +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-- 64
Query: 179 LNNSEFKGKKIKC----------------SSSQA------KHRLFIGNIPKKWTVEDMKK 216
L GK ++ SS Q ++F+G + T + KK
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKK 124
Query: 217 VVADVGPGVISIELLKDLQSSGRNRGFAFIEY 248
A G + + ++ D ++ R RGF FI Y
Sbjct: 125 YFAQFGM-ITDVVVMYDHRTQ-RPRGFGFISY 154
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 26/152 (17%)
Query: 119 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
+++IGGI+ SE+ LR + S GEV E IMK + +G +G+ FV F +A + +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-- 64
Query: 179 LNNSEFKGKKIKC----------------SSSQA------KHRLFIGNIPKKWTVEDMKK 216
L GK ++ SS Q ++F+G + T + KK
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKK 124
Query: 217 VVADVGPGVISIELLKDLQSSGRNRGFAFIEY 248
A G + + ++ D ++ R RGF FI Y
Sbjct: 125 YFAQFGM-ITDVVVMYDHRTQ-RPRGFGFISY 154
>AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850077-17854205 FORWARD LENGTH=843
Length = 843
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 113/281 (40%), Gaps = 36/281 (12%)
Query: 113 LPPHGSEVYIGGIANNVSE-EDLRVFCQSVG--------EVSEVRIMKAKESGEGKGYAF 163
LP E+ G+ + + + E+ VFC G + V + S G AF
Sbjct: 115 LPGLIDELNFTGLPDELDDLEECDVFCTGGGMELDVESQDNHAVDASGMQISDRGAANAF 174
Query: 164 VAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGP 223
V K A + E N E + LF+ NI ++ + G
Sbjct: 175 VPRKRPNTAGRVSVEHPNGEHPSRT-----------LFVRNINSSVEDSELSALFEPFGE 223
Query: 224 GVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNS 283
++ L ++ ++RGF I YY+ A + + + N+ L + ++ P+ +
Sbjct: 224 -------IRSLYTACKSRGFVMISYYDIRAAHAAMRALQNT--LLRKRTLDIHFSIPKEN 274
Query: 284 ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFG-FVHFSD 342
S + + N+ ++ D L +LF +G+I ++ P + RF F+ + D
Sbjct: 275 PSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNR------RFHRFIEYYD 328
Query: 343 RSSAMKALKNTEKYEIDGKNLECSLAKPQADQRSSGTSNSQ 383
A ALK + EI GK ++ L++P +R S S SQ
Sbjct: 329 VRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQ 369
>AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 113/281 (40%), Gaps = 36/281 (12%)
Query: 113 LPPHGSEVYIGGIANNVSE-EDLRVFCQSVG--------EVSEVRIMKAKESGEGKGYAF 163
LP E+ G+ + + + E+ VFC G + V + S G AF
Sbjct: 102 LPGLIDELNFTGLPDELDDLEECDVFCTGGGMELDVESQDNHAVDASGMQISDRGAANAF 161
Query: 164 VAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGP 223
V K A + E N E + LF+ NI ++ + G
Sbjct: 162 VPRKRPNTAGRVSVEHPNGEHPSRT-----------LFVRNINSSVEDSELSALFEPFGE 210
Query: 224 GVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNS 283
++ L ++ ++RGF I YY+ A + + + N+ L + ++ P+ +
Sbjct: 211 -------IRSLYTACKSRGFVMISYYDIRAAHAAMRALQNT--LLRKRTLDIHFSIPKEN 261
Query: 284 ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFG-FVHFSD 342
S + + N+ ++ D L +LF +G+I ++ P + RF F+ + D
Sbjct: 262 PSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNR------RFHRFIEYYD 315
Query: 343 RSSAMKALKNTEKYEIDGKNLECSLAKPQADQRSSGTSNSQ 383
A ALK + EI GK ++ L++P +R S S SQ
Sbjct: 316 VRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQ 356
>AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 113/281 (40%), Gaps = 36/281 (12%)
Query: 113 LPPHGSEVYIGGIANNVSE-EDLRVFCQSVG--------EVSEVRIMKAKESGEGKGYAF 163
LP E+ G+ + + + E+ VFC G + V + S G AF
Sbjct: 102 LPGLIDELNFTGLPDELDDLEECDVFCTGGGMELDVESQDNHAVDASGMQISDRGAANAF 161
Query: 164 VAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGP 223
V K A + E N E + LF+ NI ++ + G
Sbjct: 162 VPRKRPNTAGRVSVEHPNGEHPSRT-----------LFVRNINSSVEDSELSALFEPFGE 210
Query: 224 GVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNS 283
++ L ++ ++RGF I YY+ A + + + N+ L + ++ P+ +
Sbjct: 211 -------IRSLYTACKSRGFVMISYYDIRAAHAAMRALQNT--LLRKRTLDIHFSIPKEN 261
Query: 284 ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFG-FVHFSD 342
S + + N+ ++ D L +LF +G+I ++ P + RF F+ + D
Sbjct: 262 PSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNR------RFHRFIEYYD 315
Query: 343 RSSAMKALKNTEKYEIDGKNLECSLAKPQADQRSSGTSNSQ 383
A ALK + EI GK ++ L++P +R S S SQ
Sbjct: 316 VRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQ 356
>AT1G29400.2 | Symbols: AML5, ML5 | MEI2-like protein 5 |
chr1:10290393-10293696 REVERSE LENGTH=800
Length = 800
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 231 LKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNSESSAVSQ 290
++ L ++ ++RGF I YY+ A + + + N L + ++ P+++ S
Sbjct: 194 IRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNK--PLRRRKLDIHFSIPKDNPSEKDMN 251
Query: 291 VKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKAL 350
+ V NL +I+ D L +F HG+I ++ P K + FV F D A AL
Sbjct: 252 QGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHK-----FVEFYDVRGAEAAL 306
Query: 351 KNTEKYEIDGKNLECSLAKPQADQRS 376
K + EI GK ++ ++P +RS
Sbjct: 307 KALNRCEIAGKRIKVEPSRPGGARRS 332
>AT1G29400.1 | Symbols: AML5, ML5 | MEI2-like protein 5 |
chr1:10290393-10293696 REVERSE LENGTH=800
Length = 800
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 231 LKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNSESSAVSQ 290
++ L ++ ++RGF I YY+ A + + + N L + ++ P+++ S
Sbjct: 194 IRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNK--PLRRRKLDIHFSIPKDNPSEKDMN 251
Query: 291 VKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKAL 350
+ V NL +I+ D L +F HG+I ++ P K + FV F D A AL
Sbjct: 252 QGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHK-----FVEFYDVRGAEAAL 306
Query: 351 KNTEKYEIDGKNLECSLAKPQADQRS 376
K + EI GK ++ ++P +RS
Sbjct: 307 KALNRCEIAGKRIKVEPSRPGGARRS 332
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 86 PSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSE-VYIGGIANNVSEEDLRVFCQSVGEV 144
P + E + D+ D + + + PP ++ ++I G++ SE+ LR + GE+
Sbjct: 249 PDNSFESLNKDYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGEL 308
Query: 145 SEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAK 197
EV+I+ K S KGYAF+ + T+E A A++E+N G I ++ K
Sbjct: 309 VEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTK 361
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 47/73 (64%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
S++++GG++ + L+ S GEV+E ++ +E+G +G+ FV+F ++ A+ AI+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 178 ELNNSEFKGKKIK 190
E++ E G++I+
Sbjct: 95 EMDGKELNGRQIR 107
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 47/73 (64%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
S++++GG++ + L+ S GEV+E ++ +E+G +G+ FV+F ++ A+ AI+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 178 ELNNSEFKGKKIK 190
E++ E G++I+
Sbjct: 95 EMDGKELNGRQIR 107
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 128/294 (43%), Gaps = 34/294 (11%)
Query: 86 PSDGEEEM-RVDHTND----EVEKKKHAELLALPPHGSEVYIGGIANNVSEEDLRVFCQS 140
P DGE + RVD +D EVE ++L +++ G+ + +EE+L
Sbjct: 194 PIDGEVKADRVDKDDDGHAMEVEADGSDDVL----DAGRLFVHGLPYSTTEEELMEHFSK 249
Query: 141 VGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGKKI-----KCSSSQ 195
G++SEV ++ K++ +G AFV + E A A+++L+ F+G+ + K +
Sbjct: 250 FGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKLDKLPFQGRTLHILPAKPRAMS 309
Query: 196 AKHRLFIGNIPKKWTVEDMKKVVADVGPGVI----SIELLKD--LQSSGRNRGFAFIEYY 249
AK N+PK + E ++ A G S + D L++ R+ G E
Sbjct: 310 AKQVDNSSNLPKSFKKEREEQRKASEACGNTNAWNSFFMRPDTILENLVRSYGVTKSELL 369
Query: 250 NHACAEYS-RQKMSNSNFKLENNAPTVSWADPRNSESSAVSQVKA---------VYVKNL 299
+ C + + R + + +E ++ A R + + K + VK+L
Sbjct: 370 DRECEDPAVRLALGETRVIMETK-EALAKAGVRVTSLEEFAARKGDVKNRSKHILLVKHL 428
Query: 300 PENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNT 353
P T+ L ++F G + K+VLPP K + F+ ++ +AM L T
Sbjct: 429 PFASTEKELAQMFRKFGSLDKIVLPPTKT---MALVVFLEAAEARAAMNGLAYT 479
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 119 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
++++G + +EE++R + + G V EV ++K K +G+ +G FV + T + A +AI
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 179 LNNS-------------EFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGV 225
L+N G++ + + + K LF+G++ K+ T ++++++ G V
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFK--LFVGSLNKQATEKEVEEIFLQFG-HV 237
Query: 226 ISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAP-TVSWADPR 281
+ L++D ++RG F++Y + A + ++ + N P V +A+P+
Sbjct: 238 EDVYLMRD--EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPK 292
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 105/231 (45%), Gaps = 26/231 (11%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
+++ + +EE+L + G++SEV ++ KE+ +G A++ + E A++A+EEL
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 355
Query: 180 NNSEFKGKKIKCSSSQAKHRLF-------IGNIPKKWTVEDMKKVVADVGPGVI----SI 228
+NS F+G+ + AKHR N+PK + + ++ A G S+
Sbjct: 356 DNSSFQGRLLHILP--AKHRETSDKQVNDTSNLPKTFKQKREEQRKASEAGGDTKAWNSL 413
Query: 229 ELLKD--LQSSGRNRGFAFIEYYNHACAEYS-RQKMSNSNFKLEN---------NAPTVS 276
+ D L++ R G + E + + + R + + E N ++
Sbjct: 414 FMRPDTILENIVRVYGVSKSELLDREAEDPAVRLALGETKVIAETKEALAKAGVNVTSLE 473
Query: 277 WADPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAK 327
RN + S+ + VKNLP T+ L ++F G + K++LPP K
Sbjct: 474 KFATRNGDEKNRSK-HILLVKNLPFASTEKELAQMFGKFGSLDKIILPPTK 523
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
++V++GG+A +++R + + GE+ E I+ K +G+ KGY FV F+ + A++A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 178 ELNNSEFKGKKIKC 191
+ N G+K C
Sbjct: 77 D-PNPVIDGRKANC 89
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
++V++GG+A +++R + + GE+ E I+ K +G+ KGY FV F+ + A++A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 178 ELNNSEFKGKKIKC 191
+ N G+K C
Sbjct: 77 D-PNPVIDGRKANC 89
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 199 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 258
+LFIG I E ++ ++ G V+ +++D +++GR RGF FI + + +E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGD-VVEAVIMRD-RATGRARGFGFIVFADPCVSE--- 61
Query: 259 QKMSNSNFKLENNAPTVSWADPRNSES----------------SAVSQVKAVYVKNLPEN 302
++ ++ A PR+ + + K ++V LP +
Sbjct: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 303 ITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 362
IT++ K F+ G I VV+ Q FGF+ F D A+ + + +E++GK
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLHKTFHELNGKL 179
Query: 363 LECSLAKPQ 371
+E A P+
Sbjct: 180 VEVKRAVPK 188
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 199 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 258
+LFIG I E ++ ++ G V+ +++D +++GR RGF FI + + +E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGD-VVEAVIMRD-RATGRARGFGFIVFADPCVSE--- 61
Query: 259 QKMSNSNFKLENNAPTVSWADPRNSES----------------SAVSQVKAVYVKNLPEN 302
++ ++ A PR+ + + K ++V LP +
Sbjct: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 303 ITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 362
IT++ K F+ G I VV+ Q FGF+ F D A+ + + +E++GK
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLHKTFHELNGKL 179
Query: 363 LECSLAKPQ 371
+E A P+
Sbjct: 180 VEVKRAVPK 188
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 199 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 258
+LFIG I E ++ ++ G V+ +++D +++GR RGF FI + + +E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGD-VVEAVIMRD-RATGRARGFGFIVFADPCVSE--- 61
Query: 259 QKMSNSNFKLENNAPTVSWADPRNSES----------------SAVSQVKAVYVKNLPEN 302
++ ++ A PR+ + + K ++V LP +
Sbjct: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 303 ITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 362
IT++ K F+ G I VV+ Q FGF+ F D A+ + + +E++GK
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLHKTFHELNGKL 179
Query: 363 LECSLAKPQ 371
+E A P+
Sbjct: 180 VEVKRAVPK 188
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 199 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 258
+LFIG I E ++ ++ G V+ +++D +++GR RGF FI + + +E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGD-VVEAVIMRD-RATGRARGFGFIVFADPCVSE--- 61
Query: 259 QKMSNSNFKLENNAPTVSWADPRNSES----------------SAVSQVKAVYVKNLPEN 302
++ ++ A PR+ + + K ++V LP +
Sbjct: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 303 ITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 362
IT++ K F+ G I VV+ Q FGF+ F D A+ + + +E++GK
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLHKTFHELNGKL 179
Query: 363 LECSLAKPQ 371
+E A P+
Sbjct: 180 VEVKRAVPK 188
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
++V++GG+A +++R + GE+ E I+ K +G+ KGY FV F+ + A++A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 178 ELNNSEFKGKKIKC 191
+ N G+K C
Sbjct: 77 D-PNPVIDGRKANC 89
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 119 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
+++IGG+ + + GE+++ IM+ + +G+ +G+ F+ F + + IE+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 179 LNNSEFKGKKIK------CSSSQAKH----RLFIGNIPKKWTVEDMKKVVADVGPGVISI 228
+ K +IK +Q+K ++F+G IP T +++K A G V+
Sbjct: 80 THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG-NVVEH 138
Query: 229 ELLKDLQSSGRNRGFAFIEY 248
++++D +++ R+RGF F+ +
Sbjct: 139 QVIRDHETN-RSRGFGFVIF 157
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 87/175 (49%), Gaps = 15/175 (8%)
Query: 119 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
++++G + +EE++R + + G V EV ++K K +G+ +G FV + T + A +AI
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 179 LNNS-EFKGKKIKCSSSQA----------KHRLFIGNIPKKWTVEDMKKVVADVGPGVIS 227
L+N G A + +LF+G++ K+ T ++++++ G V
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVED 239
Query: 228 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAP-TVSWADPR 281
+ L++D ++RG F++Y + A + ++ + N P V +A+P+
Sbjct: 240 VYLMRDEYR--QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPK 292
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 87/175 (49%), Gaps = 15/175 (8%)
Query: 119 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
++++G + +EE++R + + G V EV ++K K +G+ +G FV + T + A +AI
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 179 LNNS-EFKGKKIKCSSSQA----------KHRLFIGNIPKKWTVEDMKKVVADVGPGVIS 227
L+N G A + +LF+G++ K+ T ++++++ G V
Sbjct: 106 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVED 164
Query: 228 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAP-TVSWADPR 281
+ L++D ++RG F++Y + A + ++ + N P V +A+P+
Sbjct: 165 VYLMRD--EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPK 217
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
S++++GGI+ + E LR GEV + +I+ +E+G +G+AFV F + E AS A+
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM- 92
Query: 178 ELNNSEFKGKKIKC 191
+L+ + G++I+
Sbjct: 93 QLDGQDLHGRRIRV 106
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 45/80 (56%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
S +++GG++ +V+E L G+++E +IM +++G +G+ F+ F + A AI+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 178 ELNNSEFKGKKIKCSSSQAK 197
++ E K I + ++ K
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 45/80 (56%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
S +++GG++ +V+E L G+++E +IM +++G +G+ F+ F + A AI+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 178 ELNNSEFKGKKIKCSSSQAK 197
++ E K I + ++ K
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 20/200 (10%)
Query: 194 SQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHAC 253
S K +LF+ N+P +V D+ ++ G V ++E+++ Q G+NRGFAF+ +
Sbjct: 91 SNLKRKLFVFNLPWSMSVNDISELFGQCGT-VNNVEIIR--QKDGKNRGFAFVTMASGEE 147
Query: 254 AEYSRQKMSNSNFKLENNAPTVSWA---------DPRNSESSAVSQVK-AVYVKNLPENI 303
A+ + K F++ +VS+A P + S A + +YV NL
Sbjct: 148 AQAAIDKF--DTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKA 205
Query: 304 TQDSLKKLF---EHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDG 360
L++LF + + +VV A S +GFV F+ R A A+ EI G
Sbjct: 206 RSTHLRELFTAADFNPVSARVVF--ADPEGRSSGYGFVSFATREEAENAITKLNGKEIMG 263
Query: 361 KNLECSLAKPQADQRSSGTS 380
+ + + A + G S
Sbjct: 264 RPITLKFSLRSASESEDGDS 283
>AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr3:22900311-22902159 REVERSE LENGTH=264
Length = 264
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 26/184 (14%)
Query: 200 LFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQ 259
+F+GN + D++++ G ++ + D++S G+AF+ + + AE + +
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYG----RVDRV-DMKS-----GYAFVYFEDERDAEDAIR 53
Query: 260 KMSNSNFKLENNAPTVSWAD-----PRNSES--SAVSQVKAVYVKNL-PENITQDSLKKL 311
K+ N F E +V WA PR S + K ++V N P + ++K
Sbjct: 54 KLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKH 113
Query: 312 FEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQ 371
FE +GK+T V + + F FV F + A KAL+ T++ +I + + A
Sbjct: 114 FEPYGKVTNVRI--------RRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKD 165
Query: 372 ADQR 375
D+R
Sbjct: 166 DDER 169
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
+++++GG+A + +R + + GE+ E ++ K +G KGY FV FK E A +A +
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 178 ELNNSEFKGKKIKC 191
+ N G++ C
Sbjct: 82 NM-NPVIDGRRANC 94
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 289 SQVKAVYVKNLPENITQDSLKKLFEHHGKITKV-VLPPAKAGQEKSRFGFVHFSDRSSAM 347
++V ++V NL T D L++ FE G++ V+ G+ K +GF+ F D S +
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKG-YGFITFRDYVSTV 67
Query: 348 KALKNTEKYEIDGKNLECSLAKPQADQ 374
+AL+N++ IDG+ C+LA A Q
Sbjct: 68 RALQNSKPI-IDGRTTNCNLASAGAKQ 93
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
VY+G ++ V + L G+V E R++ ++SG KG+ FV + + + AI+ L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 180 NNSEFKGKKIKCSSSQAK 197
+ ++ G++I+ S ++A+
Sbjct: 266 DGADLDGRQIRVSEAEAR 283
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 190 KCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYY 249
K S A +LF+GN+P + ++ G V +E++ D + +GR+RGF F+
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAG-NVEMVEVIYD-KITGRSRGFGFVTMS 140
Query: 250 NHACAEYSRQKMSNSNFKLENNAPTVSWADPRNSESSAVSQ------------------- 290
+ + E + Q+ + ++L+ V+ P S+
Sbjct: 141 SVSEVEAAAQQFNG--YELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGS 198
Query: 291 ----VKAVYVKNLPENITQDSLKKLFEHHGKITKV-VLPPAKAGQEKSRFGFVHFSDRSS 345
VYV NL + +L+ LF GK+ + V+ +G+ K FGFV +
Sbjct: 199 GAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKG-FGFVTYDSSQE 257
Query: 346 AMKALKNTEKYEIDGKNLECSLAKPQADQR 375
A+K+ + ++DG+ + S A+ + +R
Sbjct: 258 VQNAIKSLDGADLDGRQIRVSEAEARPPRR 287
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 243 FAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNSESSAVSQVKAVYVKNLPEN 302
F+ +N + ++R S F++E + +AD + + S ++V NLP N
Sbjct: 46 FSIAAKWNSPASRFARNVAITSEFEVEEDG----FADVAPPKEQSFSADLKLFVGNLPFN 101
Query: 303 ITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKN 362
+ L +LFE G + V + K FGFV S S A + YE+DG+
Sbjct: 102 VDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRP 161
Query: 363 LECSLAKPQADQRSSGTS 380
L + A P +R G S
Sbjct: 162 LRVN-AGPPPPKREDGFS 178
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 26/158 (16%)
Query: 115 PHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQ 174
P E+Y+ I + L Q G V V + + ++GE +G +V + A
Sbjct: 105 PRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKI 164
Query: 175 AIEELNNSEFKGKKIKCSSS------------------------QAKHRLFIGNIPKKWT 210
AI L+ +E G++++ S +++H++++GN+P
Sbjct: 165 AIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQ 224
Query: 211 VEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEY 248
+ ++ + G ++S +L D + +GRNR FAF+ +
Sbjct: 225 PDGLRNHFSKFG-TIVSTRVLHD-RKTGRNRVFAFLSF 260
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 110 LLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTK 169
L +L +++YIGG++ E L+ S V+E R+M K +G +GY FV F ++
Sbjct: 23 LGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISE 82
Query: 170 ELASQAIEELNNSEFKGKKI 189
+ A+ AI +N E G I
Sbjct: 83 DSANSAISAMNGQELNGFNI 102
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 39/58 (67%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
+++ G + ++E+L+ +S GE+ E ++ K++G GKGY FV FKT++ A +A++
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 119 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
++++G + +++E L + V+EV I+K K + +G F+ T+E A + I
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 179 LNN--------SEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIEL 230
+N S + K + +H+LF+G +PK + +++ + ++ G + +++
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYG-TIKDLQI 131
Query: 231 LK-DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAP-TVSWAD 279
L+ LQ+S +G F++Y + A + + ++ + N P V WAD
Sbjct: 132 LRGSLQTS---KGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWAD 179
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
+Y+G ++ V + L G+V E R++ ++SG KG+ FV + + +AI L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 180 NNSEFKGKKIKCSSSQAK 197
N ++ G++I+ S ++A+
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
+Y+G ++ V + L G+V E R++ ++SG KG+ FV + + +AI L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 180 NNSEFKGKKIKCSSSQAK 197
N ++ G++I+ S ++A+
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
+Y+G ++ V + L G+V E R++ ++SG KG+ FV + + +AI L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 180 NNSEFKGKKIKCSSSQAK 197
N ++ G++I+ S ++A+
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
+Y+G ++ V + L G+V E R++ ++SG KG+ FV + + +AI L
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 180 NNSEFKGKKIKCSSSQAK 197
N ++ G++I+ S ++A+
Sbjct: 340 NGADLDGRQIRVSEAEAR 357
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 46/81 (56%)
Query: 117 GSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAI 176
GS +++GG++ V++ DL G++ + +IM +++G +G+ F+ F + ++I
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 177 EELNNSEFKGKKIKCSSSQAK 197
E++ +F + I + ++ K
Sbjct: 66 REMHGRDFGDRVISVNRAEPK 86
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 292 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALK 351
+ +YV NL N+++D L+K+FE G + V +P + G K FGFV F+ A AL
Sbjct: 334 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKG-FGFVQFARLEDARNALN 392
Query: 352 NTEKYEIDGKNLECSLAKPQADQRSSGTSNS 382
+ EI G+ ++ S Q + +G + +
Sbjct: 393 LNGQLEIAGRAIKVSAVTDQTEVPEAGQTQT 423
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 292 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALK 351
+ +YV NL N+++D L+K+FE G + V +P + G K FGFV F+ A AL
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKG-FGFVQFARLEDARNALN 343
Query: 352 NTEKYEIDGKNLECSLAKPQADQRSSGTSNS 382
+ EI G+ ++ S Q + +G + +
Sbjct: 344 LNGQLEIAGRAIKVSAVTDQTEVPEAGQTQT 374
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
VY+GGI +++E DL GE+ +V +++ K +G+ KG+AF+A++ + A++ L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 180 NNSEFKGKKIK 190
N + G+ IK
Sbjct: 98 NGALVLGRTIK 108
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 292 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALK 351
+ +YV NL N+++D L+K+FE G + V +P + G K FGFV F+ A AL
Sbjct: 323 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKG-FGFVQFARLEDARNALN 381
Query: 352 NTEKYEIDGKNLECSLAKPQADQRSSGTSNS 382
+ EI G+ ++ S Q + +G + +
Sbjct: 382 LNGQLEIAGRAIKVSAVTDQTEVPEAGQTQT 412
>AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=497
Length = 497
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 108/272 (39%), Gaps = 54/272 (19%)
Query: 137 FCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGKKIK------ 190
F V +V VR++ E G+ GY FV F + A++A+EE N KI
Sbjct: 177 FFNGVAQVVSVRLVVNHE-GKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILLMKGHE 235
Query: 191 ----CSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFI 246
+ LF+ N+ + D+ DVG V+ + L+ + S G++ G+ F+
Sbjct: 236 SPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGE-VVHVRLI--VNSQGKHAGWGFV 292
Query: 247 EYYNHACAEYSRQK----MSNSNFKLEN--NAP----------TVSWADPRNSESSAVSQ 290
E+ + AE + K + N L+ AP V + D ES + +
Sbjct: 293 EFASANEAEKALVKNGEYLHNYKISLDGAKTAPHRPPKFCLDHKVWYEDYLRRESLLIKE 352
Query: 291 VKA--------------------VYVKNLPEN--ITQDSLKKLFEHHGKITKVVLPPAKA 328
V+ V+V NLP N + ++ F G+I + +
Sbjct: 353 VEGVEGLDETPDFLEEVAARKNTVFVANLPYNCRLIVPTIINFFSDVGEIVHIRIIVDHM 412
Query: 329 GQEKSRFGFVHFSDRSSAMKAL-KNTEKYEID 359
G E GFV F+ + A KAL K T K +D
Sbjct: 413 G-EPVGCGFVEFNSSNEAEKALQKKTGKISVD 443
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 14/171 (8%)
Query: 119 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
++++G I ++SE L Q V EV I+K K + +G F+ ++E A + +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 179 LNN--------SEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIEL 230
+N S + K + +H+LF+G +PK + +++ + + G + +++
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYG-TIKDLQI 137
Query: 231 LKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAP--TVSWAD 279
L+ Q + ++G AF++Y A + + + N K+E + V WAD
Sbjct: 138 LRGAQQT--SKGCAFLKYETKEQAVSAMESI-NGKHKMEGSTVPLVVKWAD 185
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 14/171 (8%)
Query: 119 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
++++G I ++SE L Q V EV I+K K + +G F+ ++E A + +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 179 LNN--------SEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIEL 230
+N S + K + +H+LF+G +PK + +++ + + G + +++
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYG-TIKDLQI 137
Query: 231 LKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAP--TVSWAD 279
L+ Q + ++G AF++Y A + + + N K+E + V WAD
Sbjct: 138 LRGAQQT--SKGCAFLKYETKEQAVSAMESI-NGKHKMEGSTVPLVVKWAD 185
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 121 YIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELN 180
++GG+A ++EDL+ G+V + +I+ +ESG +G+ FV FK ++ AIEE+N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 84/180 (46%), Gaps = 23/180 (12%)
Query: 119 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
++++G + +++E L + V+EV I+K K + +G F+ T+E A + I
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 179 LNN-----------------SEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADV 221
+N E + + S +H+LF+G +PK + +++ + ++
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEY 132
Query: 222 GPGVISIELLK-DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAP-TVSWAD 279
G + +++L+ LQ+S +G F++Y + A + + ++ + N P V WAD
Sbjct: 133 G-TIKDLQILRGSLQTS---KGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWAD 188
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 117 GSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAI 176
S+++IGG++ +E+ L G+V E +I+ + S KG+ FV F + + A +A+
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 177 EELNNSEFKGKKIKCSSSQAKHRL 200
E N + G+ I ++AK L
Sbjct: 93 MEFNGQQLNGRTIFVDYAKAKQSL 116
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 289 SQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMK 348
++ +YV LP + L+ FE G I V + + +GFV F D SA +
Sbjct: 49 TRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATR 108
Query: 349 ALKNTEKYEIDGKNLECSLAKPQADQRSSGTSNSQKPVVLPTYP 392
A +N K IDG+ +C+LA R + N+Q+ VLP YP
Sbjct: 109 ACQN-PKPVIDGREAKCNLA--YIGGRVNNNQNAQQQQVLPMYP 149