Miyakogusa Predicted Gene

Lj1g3v4717340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4717340.1 tr|Q9LZC0|Q9LZC0_ARATH Emb|CAB85509.1
OS=Arabidopsis thaliana GN=F8F6_100 PE=4
SV=1,37.43,3e-18,DUF4228,Protein of unknown function DUF4228;
seg,NULL,CUFF.33028.1
         (164 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10120.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   100   5e-22
AT5G03890.1 | Symbols:  | unknown protein; INVOLVED IN: N-termin...    94   3e-20

>AT3G10120.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G03890.1); Has 57 Blast hits to 57 proteins in
           10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:3130155-3130676 FORWARD
           LENGTH=173
          Length = 173

 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 103/186 (55%), Gaps = 35/186 (18%)

Query: 1   MGNCLVLLQENVVRVMKTDGKILEYKALIKVEQVLADFSGH-AVSDSQTGLRHLQPNTKL 59
           MGNCLV+ ++ V+++M+ DGK++EY+  +KV  +L  FS H ++ DS T   HL P  KL
Sbjct: 1   MGNCLVM-EKKVIKIMRNDGKVVEYRGPMKVHHILTQFSPHYSLFDSLTNNCHLHPQAKL 59

Query: 60  LGGQLYYLVTLXXXX-XXXXKARKKVRFAEP-------------EVQDVQK---SSVVRI 102
           L G+LYYL+           K  KKVRFA P             +  D  K   + VVR+
Sbjct: 60  LCGRLYYLLPQETNSIKHMKKTMKKVRFANPEVEKEEQEEDRLTDCCDNTKEKTNGVVRV 119

Query: 103 KLVLSKQQLHDMLQDGGFSVNKML--SLAQXXXXXXXXXXXXXRREDDVS--QGWKPVLE 158
           K+V+SKQ+L  +LQ G  SV++M+  +LA+               +DD    +GW+P+L+
Sbjct: 120 KMVVSKQELEKLLQGG--SVHEMVYRTLAKQHLCD----------DDDECHKEGWRPLLD 167

Query: 159 SIAEVN 164
           SI E +
Sbjct: 168 SIPETD 173


>AT5G03890.1 | Symbols:  | unknown protein; INVOLVED IN: N-terminal
           protein myristoylation; LOCATED IN: cellular_component
           unknown; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT3G10120.1); Has 1807 Blast hits
           to 1807 proteins in 277 species: Archae - 0; Bacteria -
           0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
           0; Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:1047150-1047689 FORWARD LENGTH=179
          Length = 179

 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 99/186 (53%), Gaps = 38/186 (20%)

Query: 1   MGNCLVLLQENVVRVMKTDGKILEYKALIKVEQVLADFSGHAVSDSQTGLRHLQPNTKLL 60
           MGNCLV+ ++ V+++++ DGK+LEY+  I V  +L  FSGH++S + T   HL P+ KLL
Sbjct: 1   MGNCLVM-EKKVIKIVRDDGKVLEYREPISVHHILTQFSGHSISHNNT---HLLPDAKLL 56

Query: 61  GGQLYYLVTLXXXXXXXXKARKKVRFAEPEVQ----------------------DVQKSS 98
            G+LYYL+          K  KKV FA PEV+                      D +  +
Sbjct: 57  SGRLYYLLP---TTMTKKKVNKKVTFANPEVEGDERLLREEEDSSESNSNIDGDDTKNVT 113

Query: 99  VVRIKLVLSKQQLHDMLQDGGFSVNKMLSLAQXXXXXXXXXXXXXRREDDV--SQGWKPV 156
           VVR+K+V+ KQ+L  +LQ G  SV++M+                   +DD+  + GW+P 
Sbjct: 114 VVRMKIVVHKQELEKLLQGG--SVHEMM-----YQTLEKQLLLTSSDDDDLECNSGWRPA 166

Query: 157 LESIAE 162
           L+SI E
Sbjct: 167 LDSIPE 172