Miyakogusa Predicted Gene

Lj1g3v4715160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4715160.1 Non Chatacterized Hit- tr|B9SRV7|B9SRV7_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,70.67,2e-18,coiled-coil,NULL; seg,NULL,CUFF.32984.1
         (161 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52770.1 | Symbols: ZPR3 | protein binding | chr3:19557891-19...    47   4e-06

>AT3G52770.1 | Symbols: ZPR3 | protein binding |
           chr3:19557891-19558094 REVERSE LENGTH=67
          Length = 67

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 29/45 (64%)

Query: 90  MERLNSELYYQNCHIMKENERLRKKXXXXXXXXXXXXXXXKQKIS 134
           MERLNS+L+ +NC+IMKENERLRKK               KQK+S
Sbjct: 1   MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLS 45