Miyakogusa Predicted Gene

Lj1g3v4703000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4703000.1 tr|B6DRE4|B6DRE4_9LAMI 60S acidic ribosomal
protein P2-like protein OS=Forsythia suspensa GN=RPLP2
P,73.04,2e-19,60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER,NULL;
seg,NULL; Ribosomal_60s,Ribosomal protein 60S,CUFF.32975.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44590.1 | Symbols:  | 60S acidic ribosomal protein family | ...    92   1e-19
AT3G44590.2 | Symbols:  | 60S acidic ribosomal protein family | ...    92   1e-19
AT2G27710.4 | Symbols:  | 60S acidic ribosomal protein family | ...    91   2e-19
AT2G27710.3 | Symbols:  | 60S acidic ribosomal protein family | ...    84   2e-17
AT2G27710.2 | Symbols:  | 60S acidic ribosomal protein family | ...    84   2e-17
AT2G27710.1 | Symbols:  | 60S acidic ribosomal protein family | ...    84   2e-17
AT2G27720.1 | Symbols:  | 60S acidic ribosomal protein family | ...    83   3e-17
AT3G28500.1 | Symbols:  | 60S acidic ribosomal protein family | ...    76   5e-15
AT2G27720.3 | Symbols:  | 60S acidic ribosomal protein family | ...    74   2e-14
AT5G40040.1 | Symbols:  | 60S acidic ribosomal protein family | ...    72   9e-14
AT2G27720.2 | Symbols:  | 60S acidic ribosomal protein family | ...    70   3e-13

>AT3G44590.1 | Symbols:  | 60S acidic ribosomal protein family |
           chr3:16163983-16164658 FORWARD LENGTH=111
          Length = 111

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 1   MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
           MKV AA+LLAVLGGN  PSAD++K I+ +VGAD D E +  LL EV GKD+AE+IASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLSSVPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 115
           KL+SVP                                      SDDDMGFSLF+
Sbjct: 61  KLASVPS----GGGVAVSAAPSSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111


>AT3G44590.2 | Symbols:  | 60S acidic ribosomal protein family |
           chr3:16163983-16164658 FORWARD LENGTH=111
          Length = 111

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 1   MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
           MKV AA+LLAVLGGN  PSAD++K I+ +VGAD D E +  LL EV GKD+AE+IASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLSSVPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 115
           KL+SVP                                      SDDDMGFSLF+
Sbjct: 61  KLASVPS----GGGVAVSAAPSSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111


>AT2G27710.4 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=98
          Length = 98

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 56/66 (84%)

Query: 1  MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
          MKV+AAYLLAVL G  +P++ D+K+IL SVGA+ +D ++  LL EVKGKDLAE+IA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KLSSVP 66
          KL+SVP
Sbjct: 61 KLASVP 66


>AT2G27710.3 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=115
          Length = 115

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 52/62 (83%)

Query: 1  MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
          MKV+AAYLLAVL G  +P++ D+K+IL SVGA+ +D ++  LL EVKGKDLAE+IA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27710.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=115
          Length = 115

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 52/62 (83%)

Query: 1  MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
          MKV+AAYLLAVL G  +P++ D+K+IL SVGA+ +D ++  LL EVKGKDLAE+IA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27710.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=115
          Length = 115

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 52/62 (83%)

Query: 1  MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
          MKV+AAYLLAVL G  +P++ D+K+IL SVGA+ +D ++  LL EVKGKDLAE+IA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27720.1 | Symbols:  | 60S acidic ribosomal protein family |
           chr2:11818696-11819370 FORWARD LENGTH=115
          Length = 115

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 65/115 (56%)

Query: 1   MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
           MKV+AA+LLAVL G  +P+  D+K IL SVGA+ +D ++  LL EVKGKDLAE+IA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLSSVPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 115
           KL+SVP                                      SDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115


>AT3G28500.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr3:10682204-10682551 FORWARD LENGTH=115
          Length = 115

 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 51/65 (78%)

Query: 1  MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
          MKVIAA+LLA LGGN  P+++DLK IL SVGA+ D+ K+  L S +K  D+ E+IA+GRE
Sbjct: 1  MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61 KLSSV 65
          K+S++
Sbjct: 61 KMSAL 65


>AT2G27720.3 | Symbols:  | 60S acidic ribosomal protein family |
           chr2:11818696-11819370 FORWARD LENGTH=127
          Length = 127

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 65/127 (51%), Gaps = 12/127 (9%)

Query: 1   MKVIAAYLLAVLGGNTAPSADDLKSILSS------------VGADADDEKLSFLLSEVKG 48
           MKV+AA+LLAVL G  +P+  D+K IL S            VGA+ +D ++  LL EVKG
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIVGAETEDSQIELLLKEVKG 60

Query: 49  KDLAEVIASGREKLSSVPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDD 108
           KDLAE+IA+GREKL+SVP                                      SDDD
Sbjct: 61  KDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDD 120

Query: 109 MGFSLFD 115
           MGFSLF+
Sbjct: 121 MGFSLFE 127


>AT5G40040.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr5:16029913-16030257 REVERSE LENGTH=114
          Length = 114

 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 47/65 (72%)

Query: 1  MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
          MKV+AAYLLA L GN  PS  DLK I+ SVGA+ D EK+    S +K +D+ E+IA GRE
Sbjct: 1  MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61 KLSSV 65
          K++++
Sbjct: 61 KMAAL 65


>AT2G27720.2 | Symbols:  | 60S acidic ribosomal protein family |
           chr2:11818696-11819370 FORWARD LENGTH=130
          Length = 130

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 64/130 (49%), Gaps = 15/130 (11%)

Query: 1   MKVIAAYLLAVLGGNTAPSADDLKSILSS---------------VGADADDEKLSFLLSE 45
           MKV+AA+LLAVL G  +P+  D+K IL S                GA+ +D ++  LL E
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 46  VKGKDLAEVIASGREKLSSVPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 105
           VKGKDLAE+IA+GREKL+SVP                                      S
Sbjct: 61  VKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEES 120

Query: 106 DDDMGFSLFD 115
           DDDMGFSLF+
Sbjct: 121 DDDMGFSLFE 130