Miyakogusa Predicted Gene
- Lj1g3v4699690.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4699690.1 tr|B9GKP5|B9GKP5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_548521 PE=4
SV=1,42.22,0.000006,coiled-coil,NULL; seg,NULL,CUFF.32955.1
(518 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G03670.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 221 1e-57
AT2G36420.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 94 2e-19
>AT5G03670.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G36420.1); Has 700 Blast hits to 624 proteins
in 104 species: Archae - 0; Bacteria - 18; Metazoa -
333; Fungi - 60; Plants - 73; Viruses - 24; Other
Eukaryotes - 192 (source: NCBI BLink). |
chr5:947311-949898 FORWARD LENGTH=516
Length = 516
Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 180/553 (32%), Positives = 249/553 (45%), Gaps = 79/553 (14%)
Query: 2 MAQKQHFLHELLKEDQEPFLLNNYISDRCSQMKRPSPKTSLQAKKRKPIFNQSSNFPVNL 61
MA ++H L +LL+EDQEPF L +YISDR Q+ + T LQ KKR+PI +Q++ P
Sbjct: 1 MASQRH-LKDLLEEDQEPFQLQSYISDRRCQIN--AHVTHLQVKKRRPI-SQNAGLPSRF 56
Query: 62 CRKTCLFSFTETATTPDLLRKSPLFEPRSPCKSPNAIFLHIPSRTSALLLEAALRIXXXX 121
CR C FS E+ PD +KSPLFE +SP +S NAIF++IP+RT+++LLEAA+RI
Sbjct: 57 CRNACFFSLRES---PDP-KKSPLFELKSPNRSQNAIFVNIPARTASILLEAAVRIQKQS 112
Query: 122 XXXXXXXXR----GFGLFGSLFKRLTQRNN------------NYSTSKSSVKWGSR--RK 163
R FG+FGS+ K+LT R + S+ K ++W S RK
Sbjct: 113 SEVSKTRTRNAGNAFGIFGSVLKKLTNRKKREISGGKEAGRVSSSSVKDMLRWESPVVRK 172
Query: 164 LCNGTEEKMEESQKESNN---ASEVGF-----------LCSYNGRTSSAVWXXXXXXXXX 209
+ ++ EE S ASE F NG S W
Sbjct: 173 IVTRKSKRNEEENASSQTHKIASETHFSRRSSSSGVWSESVTNGERS---WDVDFETSIS 229
Query: 210 XXXXXXXXXXXEVIHFVTDNQQTCDFCSHHSAFCESPFRFALQTXXXXXXGHHTPELLSP 269
++ D S FCESPF F LQT G TP SP
Sbjct: 230 TSSRSNGSDEFAMMMNGQD-------LSEDKRFCESPFHFVLQTMPSNG-GFRTPNFSSP 281
Query: 270 S---RHIIEDKESKGGETLNXXXXXXXXXXXXXXQCSPVSVLDPPFXXXXXXXXXXXXXX 326
+ RH + E + E Q SPVSVLDPPF
Sbjct: 282 AASPRHDCHEMEKESYEVEKLKKLEMEEEEEEKEQSSPVSVLDPPFQDDDEDIHMDDNN- 340
Query: 327 XXXXXXXXXXXLESSYAIVQRAKQQLLYKLCRFEKLAGLDPVXXXXXXXXXXXXXXXXXX 386
+ SS+ VQ+AK LL KLCRFE+LAGLDP+
Sbjct: 341 -----------IPSSFRSVQKAKHLLLQKLCRFEQLAGLDPMELEKRMSDQETEEEEEEE 389
Query: 387 XXXXHEDEDREASYKENDLRVIVLQAVYQSRVNDRQQIPQEFRKLVFDLIVEE-ERGLNS 445
E I+ Q V ++ + ++P+ L+ DL EE ++
Sbjct: 390 EEEMKSLYHCE----------IITQRVLKTYFEEMVEVPEGVEALISDLAAEELPSDIDG 439
Query: 446 KEDKEVVERKICKRLEVWKEVESNTIDMMIEEDFNREDC-VWK-KNGEQIKMMAGEVELA 503
+ + +V +++C+RL W++VESNTIDMM+E DF E +W+ KN + ++E
Sbjct: 440 EAEAAIVAKRVCERLRSWRDVESNTIDMMVEHDFRTERLGLWRSKNDADVSETVLDIEFE 499
Query: 504 IFGFLVEEFSEEL 516
IF LVEE SE++
Sbjct: 500 IFEDLVEELSEDI 512
>AT2G36420.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G03670.1); Has 10588 Blast hits to 6606
proteins in 440 species: Archae - 8; Bacteria - 365;
Metazoa - 4146; Fungi - 1198; Plants - 483; Viruses -
212; Other Eukaryotes - 4176 (source: NCBI BLink). |
chr2:15286498-15288990 FORWARD LENGTH=439
Length = 439
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 84/152 (55%), Gaps = 20/152 (13%)
Query: 4 QKQHFLHELLKEDQEPFLLNNYISDRCSQMKRPSPKTSLQAKKRKPIFNQSSNFPVNL-- 61
+K+ LHE L++DQEPF LN+YI + SQM + ++ KKRK + + FP L
Sbjct: 5 EKKKHLHEFLEDDQEPFHLNHYIGNLRSQMG----CSDMRVKKRKS--DNVATFPPGLFS 58
Query: 62 CRKTCLFSFTETATTPDLLRKSPLFEPRSPCKS---PNAIFLHIPSRTSALLLEAALRIX 118
C +C F+ +PD RKSPLFE RSP K +FL IP+RT+A+LL+AA RI
Sbjct: 59 CENSCFFA---AHKSPD-PRKSPLFELRSPGKKKIRDGRVFLQIPARTAAILLDAAARIQ 114
Query: 119 XXXXXXXXXXX-----RGFGLFGSLFKRLTQR 145
GFG+FGS+ K LT R
Sbjct: 115 KQQSEKAKTNKARTRGNGFGMFGSVLKLLTYR 146
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 116/285 (40%), Gaps = 43/285 (15%)
Query: 242 FCESPFRFALQTXXXXXXGHHTPELLS----PSRHIIEDKESKGGETLNXXXXXXXXXXX 297
FCESPF F LQT GH TP S P+R ED++S E+L
Sbjct: 185 FCESPFHFVLQTTPSSS-GHQTPHFTSTATSPARRSTEDEDSDETESLEKVRGQEEEDKE 243
Query: 298 XXX--QCSPVSVLDPPFXXXXXXXXXXXXXXXXXXXXXXXXXLESSYAIVQRAKQQLLYK 355
QCSPVSVLDP L S+ IVQRAK++LL K
Sbjct: 244 EEDKEQCSPVSVLDP-------LEEEEEDEDHHQHEPDPPNNLSCSFEIVQRAKRRLLKK 296
Query: 356 LCRFEKLAGLDPVXXXXXXXXXXXXXXXXXXXXXXHEDEDREASYKENDLRVIVLQAVYQ 415
L RFEKLAGLDPV + E E + +
Sbjct: 297 LRRFEKLAGLDPV--------------------------ELEGKMSEEEDEEEEEYEESE 330
Query: 416 SRVNDRQQIPQEFRKLVFDLIVEEERGLNSKEDKEVVER-KICKRLEVWKE--VESNTID 472
N R E + V + + E R ++ K+ ER K + + W+ +D
Sbjct: 331 EDDNIRIYDSDEEYEDVDEAMARESRCAEDEKRKKNDERQKKWRMMNAWRVGLGAEEDVD 390
Query: 473 MMIEEDFNREDCVWKKNGEQIKMMAGEVELAIFGFLVEEFSEELV 517
++ +D E W ++G +++ ++E +IF L++EFS ELV
Sbjct: 391 AVVRKDLREEAGEWTRHGGEVEEAVSDLEHSIFFVLIDEFSRELV 435