Miyakogusa Predicted Gene
- Lj1g3v4695470.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4695470.1 Non Chatacterized Hit- tr|I1HFP0|I1HFP0_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,38.52,1e-18,ZINC_FINGER_C2H2_2,Zinc finger, C2H2;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; no description,Zinc
fing,CUFF.32946.1
(315 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G03740.1 | Symbols: HD2C, HDT3 | histone deacetylase 2C | chr... 116 2e-26
AT3G44750.2 | Symbols: HDA3 | histone deacetylase 3 | chr3:16298... 115 3e-26
AT3G44750.1 | Symbols: HD2A, ATHD2A, HDA3, HDT1 | histone deacet... 115 3e-26
AT5G22650.1 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2, ATH... 102 4e-22
AT5G22650.2 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 | hi... 102 4e-22
AT2G27840.1 | Symbols: HDT4, HDA13, HDT04 | histone deacetylase-... 82 4e-16
AT2G27840.2 | Symbols: HDT4, HDA13, HDT04 | histone deacetylase-... 60 2e-09
>AT5G03740.1 | Symbols: HD2C, HDT3 | histone deacetylase 2C |
chr5:981994-983961 FORWARD LENGTH=294
Length = 294
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 1 MEFWGVEVKSGESLKVDPEDDKIVHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGTLS 60
MEFWGVEVK+G+ L +DP D++VH+S LG+ SK+ +E + +YV G KL +GTLS
Sbjct: 1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGE-SKNNVTEPIQLYVTVGSDKLLIGTLS 59
Query: 61 ADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFKAES 97
+K+PQ+S +++ E+ F LSH WK+GSVFF+G+K ++
Sbjct: 60 HEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVDA 96
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 62/90 (68%), Gaps = 6/90 (6%)
Query: 230 DSPKNTPVPVKKAKFVTPQKTDSKN-VAHVATPYP-KQAGKASA--STKQPAKPQ-TPKS 284
+S KN P KKAKFVTPQKTDSK HVATP+P KQAGK S ST + +K Q TPKS
Sbjct: 205 NSSKN-PASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKS 263
Query: 285 GGEYSCKPCNRSFKTEDALGSHNKAKHSAA 314
G + CK C R+F +E L SH KAKHSAA
Sbjct: 264 AGAFGCKSCTRTFTSEMGLQSHTKAKHSAA 293
>AT3G44750.2 | Symbols: HDA3 | histone deacetylase 3 |
chr3:16298045-16299585 FORWARD LENGTH=242
Length = 242
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Query: 1 MEFWGVEVKSGESLKVDPEDDKIVHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGTLS 60
MEFWG+EVKSG+ + V PE+ ++H+S A LG+ KG E V ++VK G+Q L LGTLS
Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLS 59
Query: 61 ADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFK 94
+ PQ+ DL+F+KEFELSH W GSV+F G+K
Sbjct: 60 TENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 93
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 57/100 (57%), Gaps = 19/100 (19%)
Query: 217 TPKKAEGSKKRVLDSPKNTPVPVKKAKF-VTPQKTDSKNVAHVATPYPKQAGKASASTKQ 275
TPKK SKKR ++ PV KKAK VTPQKTD K K+ GKA+
Sbjct: 161 TPKKPASSKKRANETTPKAPVSAKKAKVAVTPQKTDEK----------KKGGKAAN---- 206
Query: 276 PAKPQTPKSGGEYSCKPCNRSFKTEDALGSHNKAKHSAAK 315
Q+PKS + SC C ++F + +AL SHNKAKH+AAK
Sbjct: 207 ----QSPKSASQVSCGSCKKTFNSGNALESHNKAKHAAAK 242
>AT3G44750.1 | Symbols: HD2A, ATHD2A, HDA3, HDT1 | histone
deacetylase 3 | chr3:16298045-16299585 FORWARD
LENGTH=245
Length = 245
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Query: 1 MEFWGVEVKSGESLKVDPEDDKIVHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGTLS 60
MEFWG+EVKSG+ + V PE+ ++H+S A LG+ KG E V ++VK G+Q L LGTLS
Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLS 59
Query: 61 ADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFK 94
+ PQ+ DL+F+KEFELSH W GSV+F G+K
Sbjct: 60 TENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 93
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 57/100 (57%), Gaps = 19/100 (19%)
Query: 217 TPKKAEGSKKRVLDSPKNTPVPVKKAKF-VTPQKTDSKNVAHVATPYPKQAGKASASTKQ 275
TPKK SKKR ++ PV KKAK VTPQKTD K K+ GKA+
Sbjct: 164 TPKKPASSKKRANETTPKAPVSAKKAKVAVTPQKTDEK----------KKGGKAAN---- 209
Query: 276 PAKPQTPKSGGEYSCKPCNRSFKTEDALGSHNKAKHSAAK 315
Q+PKS + SC C ++F + +AL SHNKAKH+AAK
Sbjct: 210 ----QSPKSASQVSCGSCKKTFNSGNALESHNKAKHAAAK 245
>AT5G22650.1 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2,
ATHD2 | histone deacetylase 2B | chr5:7534120-7536054
FORWARD LENGTH=306
Length = 306
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Query: 1 MEFWGVEVKSGESLKVDPEDDKIVHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGTLS 60
MEFWGV V + KV PE+D +VH+S A L D + G E+V + V G KL +GTLS
Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASL-DCTVKSG-ESVVLSVTVGGAKLVIGTLS 58
Query: 61 ADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFKA 95
DK+PQIS+DL+F+KEFELSH+ +V F G+K+
Sbjct: 59 QDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKS 93
>AT5G22650.2 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 |
histone deacetylase 2B | chr5:7534120-7536054 FORWARD
LENGTH=305
Length = 305
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Query: 1 MEFWGVEVKSGESLKVDPEDDKIVHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGTLS 60
MEFWGV V + KV PE+D +VH+S A L D + G E+V + V G KL +GTLS
Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASL-DCTVKSG-ESVVLSVTVGGAKLVIGTLS 58
Query: 61 ADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFKA 95
DK+PQIS+DL+F+KEFELSH+ +V F G+K+
Sbjct: 59 QDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKS 93
>AT2G27840.1 | Symbols: HDT4, HDA13, HDT04 | histone
deacetylase-related / HD-related |
chr2:11862085-11863707 FORWARD LENGTH=203
Length = 203
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 1 MEFWGVEVKSGESLKVDPEDDKIVHLSMACLGDVSKDKGSEAVSVYVKFGDQK--LALGT 58
MEFWG+E+K G+ KV +D +VH S LGDV K K E +VYVK GD + +G
Sbjct: 1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGN 60
Query: 59 LSADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFKA 95
LS K+PQ S DL EFE+SHN SV+ G++
Sbjct: 61 LS-QKFPQFSIDLYLGHEFEISHN-STSSVYLIGYRT 95
>AT2G27840.2 | Symbols: HDT4, HDA13, HDT04 | histone
deacetylase-related / HD-related |
chr2:11862595-11863707 FORWARD LENGTH=181
Length = 181
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 23 IVHLSMACLGDVSKDKGSEAVSVYVKFGDQK--LALGTLSADKYPQISYDLIFEKEFELS 80
+VH S LGDV K K E +VYVK GD + +G LS K+PQ S DL EFE+S
Sbjct: 1 MVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNLS-QKFPQFSIDLYLGHEFEIS 59
Query: 81 HNWKHGSVFFTGFK 94
HN SV+ G++
Sbjct: 60 HN-STSSVYLIGYR 72