Miyakogusa Predicted Gene

Lj1g3v4694450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4694450.1 Non Chatacterized Hit- tr|I3SLP5|I3SLP5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.06,0,zinc
finger,Zinc finger, CCCH-type; RNA recognition motif,RNA recognition
motif domain, eukaryote; U,CUFF.32961.1
         (318 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x...   293   1e-79
AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x...   293   1e-79
AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sma...   291   6e-79
AT1G27650.2 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sma...   188   4e-48
AT1G10320.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   128   5e-30
AT3G44785.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   104   9e-23

>AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | Zinc finger
           C-x8-C-x5-C-x3-H type family protein |
           chr5:17170445-17171296 REVERSE LENGTH=283
          Length = 283

 Score =  293 bits (749), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 160/191 (83%), Gaps = 6/191 (3%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+LSNMYQRPDM   
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDM--- 57

Query: 61  IITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYV 120
            IT                    F+DFYED+F+EL+K+G+++SLN+CDNLADHM+GNVYV
Sbjct: 58  -ITPGVDPQGQPLDPSKIQDH--FEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYV 114

Query: 121 QYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLK 180
            +KEEDHAA AL  L GRFYSGRPIIADFSPVTDFREATCRQYEEN CNRGGYCNFMH+K
Sbjct: 115 LFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVK 174

Query: 181 KISRDLRRRLF 191
           +ISR+LRR+LF
Sbjct: 175 QISRELRRKLF 185


>AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger
           C-x8-C-x5-C-x3-H type family protein |
           chr5:17170445-17171296 REVERSE LENGTH=283
          Length = 283

 Score =  293 bits (749), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 160/191 (83%), Gaps = 6/191 (3%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+LSNMYQRPDM   
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDM--- 57

Query: 61  IITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYV 120
            IT                    F+DFYED+F+EL+K+G+++SLN+CDNLADHM+GNVYV
Sbjct: 58  -ITPGVDPQGQPLDPSKIQDH--FEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYV 114

Query: 121 QYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLK 180
            +KEEDHAA AL  L GRFYSGRPIIADFSPVTDFREATCRQYEEN CNRGGYCNFMH+K
Sbjct: 115 LFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVK 174

Query: 181 KISRDLRRRLF 191
           +ISR+LRR+LF
Sbjct: 175 QISRELRRKLF 185


>AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small
           subunit, putative | chr1:9615152-9616042 FORWARD
           LENGTH=296
          Length = 296

 Score =  291 bits (744), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 144/191 (75%), Positives = 158/191 (82%), Gaps = 6/191 (3%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+LSNMYQRPDM   
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDM--- 57

Query: 61  IITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYV 120
            IT                    F+DF+EDLF+EL K+G+I+SLNICDNLADHM+GNVYV
Sbjct: 58  -ITPGVDAQGQPLDPRKIQEH--FEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYV 114

Query: 121 QYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLK 180
           Q+KEED AA AL  L GRFYSGRPIIADFSPVTDFREATCRQYEEN CNRGGYCNFMH+K
Sbjct: 115 QFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK 174

Query: 181 KISRDLRRRLF 191
            +SR+LRR+LF
Sbjct: 175 LVSRELRRKLF 185


>AT1G27650.2 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small
           subunit, putative | chr1:9615302-9616042 FORWARD
           LENGTH=246
          Length = 246

 Score =  188 bits (478), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/141 (67%), Positives = 108/141 (76%), Gaps = 6/141 (4%)

Query: 51  MYQRPDMNLNIITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNL 110
           MYQRPDM    +                     F+DF+EDLF+EL K+G+I+SLNICDNL
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEH------FEDFFEDLFEELGKFGEIESLNICDNL 54

Query: 111 ADHMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNR 170
           ADHM+GNVYVQ+KEED AA AL  L GRFYSGRPIIADFSPVTDFREATCRQYEEN CNR
Sbjct: 55  ADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNR 114

Query: 171 GGYCNFMHLKKISRDLRRRLF 191
           GGYCNFMH+K +SR+LRR+LF
Sbjct: 115 GGYCNFMHVKLVSRELRRKLF 135


>AT1G10320.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr1:3384164-3388373 REVERSE LENGTH=757
          Length = 757

 Score =  128 bits (322), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 11/173 (6%)

Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNIITXXXXX 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TL++ NMY  P +           
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWE-------- 288

Query: 69  XXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHA 128
                          +++FYED+  E  KYG++ +  +C N + H+ GNVYV Y+  + A
Sbjct: 289 QDEGLEYTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESA 348

Query: 129 ANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEEN---VCNRGGYCNFMH 178
             A  ++ GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H
Sbjct: 349 ILAYQSINGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401


>AT3G44785.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type
          family protein | chr3:16328221-16328448 REVERSE
          LENGTH=75
          Length = 75

 Score =  104 bits (259), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 51/54 (94%)

Query: 1  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQR 54
          M EHLASI+GTEKDRVNCPFYFKIG CR+GDRCSRL+TKP+ISPTL+LSN YQ+
Sbjct: 1  MVEHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTYQQ 54