Miyakogusa Predicted Gene
- Lj1g3v4694420.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4694420.1 tr|F4K3N3|F4K3N3_ARATH Small RNA degrading
nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=4
SV=1,44.85,4e-18,RNase_T,Exonuclease, RNase T/DNA polymerase III;
Ribonuclease H-like,Ribonuclease H-like domain; no ,CUFF.33291.1
(445 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 | c... 325 3e-89
AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 | c... 315 4e-86
AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 | c... 297 1e-80
AT5G67240.2 | Symbols: SDN3 | small RNA degrading nuclease 3 | c... 293 1e-79
AT5G05540.2 | Symbols: SDN2 | small RNA degrading nuclease 2 | c... 242 3e-64
AT3G50090.1 | Symbols: | Exonuclease family protein | chr3:1857... 219 3e-57
AT5G25800.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 118 1e-26
AT3G15080.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 75 7e-14
AT3G27970.1 | Symbols: | Exonuclease family protein | chr3:1038... 72 1e-12
AT5G40310.1 | Symbols: | Exonuclease family protein | chr5:1611... 67 2e-11
AT2G48100.3 | Symbols: | Exonuclease family protein | chr2:1967... 61 1e-09
AT2G48100.2 | Symbols: | Exonuclease family protein | chr2:1967... 61 1e-09
AT2G48100.1 | Symbols: | Exonuclease family protein | chr2:1967... 61 1e-09
AT2G48100.4 | Symbols: | Exonuclease family protein | chr2:1967... 55 8e-08
>AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 |
chr5:26824454-26828098 REVERSE LENGTH=782
Length = 782
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 172/365 (47%), Positives = 241/365 (66%), Gaps = 24/365 (6%)
Query: 1 MRHHSNQYSVEKLKDKS--HVSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNK- 57
M+ +N+ +EK K ++ +PEQ LV++T+ H YP +Y+F S E W + L K K
Sbjct: 78 MQCGANRELIEKFKQETPDKETPEQRLVRLTITHDDYPGNYTFPSYAEDWYVTELGKKKS 137
Query: 58 KAMRSTAMVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVS 117
K ++ST M+++DCEMV CEDG++ALV V VD +LKV L K VKPDK ++DY+T++TGV+
Sbjct: 138 KVIKSTRMLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVT 197
Query: 118 SRDLETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGS 177
+ DLE T ++ADIQKK++R LS GTILVGH L NDL+VL++DH RV+DT+Y+F+ +D
Sbjct: 198 AEDLERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSYVFEFVDAP 257
Query: 178 IHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLV---- 233
++PSLN LC++VLG EVR GA HNC+ DA AAMKLVLA ++ G TL+
Sbjct: 258 KTQRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAVEKGA-----ATLIQPTE 312
Query: 234 ---------QEHVSESDMTKLLLHGIPTSVNIETLHKIVPGDFTTEVKPSRKGQRAKYSA 284
QE E+ +L LH IP V E LH ++ G+FT VKP + G + +A
Sbjct: 313 EMMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEELHGVLSGNFTLVVKPPKTGGYS--TA 370
Query: 285 LATFKNQQEAYEAYENVQGSQTKDSFGRPQKEVMFQPSTGMTVSLFVRKMTADE-PDNLL 343
+ F + +EA EA+ENV+G KD G PQK+ + + S+G+ VSLFVRKM D+ P +
Sbjct: 371 VVDFSSPEEANEAFENVEGDVAKDKSGLPQKKAVLKLSSGLAVSLFVRKMVQDDSPCEIS 430
Query: 344 QSKRA 348
S+RA
Sbjct: 431 TSERA 435
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 8/136 (5%)
Query: 239 ESDMTKLLLHGIPTSVNIETLHKIVPGDFTTEVKP-SRKGQRAKYSALATFKNQQEAYEA 297
E+D TKL LH IP V + LH ++ GDFT +VKP RKG Y+A+ F + +EA EA
Sbjct: 465 EADKTKLFLHKIPHDVPSQELHGVLNGDFTLDVKPPKRKG--GYYNAVVDFNSPEEANEA 522
Query: 298 YENVQGSQTKDSFGRPQKEVMFQPSTGMTVSLFVRKMTADE-PDNLLQSKRALQVDEADE 356
+ENV+G KD G PQK V+F+ S+G VSL+VRKM D+ P + +KRA +E
Sbjct: 523 FENVEGDVVKDKTGLPQKMVVFKLSSGSGVSLYVRKMVHDDSPGEISTTKRA----RTEE 578
Query: 357 AVNASKKAKTVPQIEE 372
+ +SK+ KT + EE
Sbjct: 579 SNMSSKRQKTEDESEE 594
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 108/209 (51%), Gaps = 42/209 (20%)
Query: 239 ESDMTKLLLHGIPTSVNIETLHKIVPGDFTTEVKPSRKGQRAKYSALATFKNQQEAYEAY 298
E+D TKLLLH IP +V + L ++ G FT EV P ++ R Y+A+ TF + +EA +A+
Sbjct: 604 EADKTKLLLHKIPLNVPSQELKVVITGQFTLEVMPPKRKGRY-YNAVVTFNSPEEANKAF 662
Query: 299 ENVQGSQTKDSFGRPQKEVMFQPSTGMTVSLFVRKMTADEPDNLLQSKRALQVDEADEAV 358
E V+G K+ G QK V F+ S+G L+VRKM DE +E EA
Sbjct: 663 EKVKGEAVKEKGGLAQKMVAFKLSSGSGACLYVRKMVQDES------------EETKEA- 709
Query: 359 NASKKAKTVPQIEEDALIGSTKGDTCTHLKEIEALNEQLKQKDL---------EIESLRE 409
NA+ E+D HLKE+E L E+LK + EIE L++
Sbjct: 710 NAN-------HCEDD------------HLKEMEELKEKLKAMEFAISCEGHSKEIEELKQ 750
Query: 410 QLRKRDFEVSKLHIMISSLKKRTDKTRNK 438
+L ++ ++ +I++LK + +K ++K
Sbjct: 751 KLNAKEHQIQAQDKIIANLKMKLEKKQSK 779
>AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 |
chr3:18578411-18580594 FORWARD LENGTH=409
Length = 409
Score = 315 bits (807), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 162/341 (47%), Positives = 231/341 (67%), Gaps = 7/341 (2%)
Query: 1 MRHHSNQYSVEKLKDKSHV--SPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINL-RKNK 57
++ H+N +E LK +S +PEQ LV++T++HP Y LDYSF+ E W + ++ K K
Sbjct: 73 LKCHANHLLIENLKQESQDEDTPEQMLVRLTVEHPSYSLDYSFKPYSEDWFVSDVGMKMK 132
Query: 58 KAMRSTAMVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVS 117
K M ST MVAVDCEMVLCEDGTE LV V VVD +LKV L + VKP+K +VDYRT++TG++
Sbjct: 133 KVMESTNMVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGIT 192
Query: 118 SRDLETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGS 177
+ D+E + ++ DIQ+ ++ LS GTILVGHSL+ DL VLK+DH +V+DTA +F+ +
Sbjct: 193 AEDIENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTR 252
Query: 178 IHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHV 237
R+PSLN LC+++LGYEVR+ G PH+C+ DA AAMKL LA ++ VD + + +
Sbjct: 253 KLRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVVEKRVDTTIKPS---KEM 309
Query: 238 SESDMTKLLLHGIPTSVNIETLHKIVPGDFTTEVKPSRKGQRAKYSALATFKNQQEAYEA 297
E + KL LH IP +V E L +++ G FT +VK + K Q Y A A F + ++A +A
Sbjct: 310 LEVEKAKLFLHKIPNNVPSEELEQVLSGKFTLDVKQA-KTQGRYYCAFALFHSSEDADQA 368
Query: 298 YENVQGSQTKDSFGRPQKEVMFQPSTGMTVSLFVRKMTADE 338
+E++ G + DS G PQK V+ + S+G S++VRKM DE
Sbjct: 369 FEHIDGIEMTDSLGLPQKVVIIKLSSGSRASIYVRKMVQDE 409
>AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 |
chr5:1636419-1638759 FORWARD LENGTH=466
Length = 466
Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 158/335 (47%), Positives = 224/335 (66%), Gaps = 10/335 (2%)
Query: 11 EKLKDKS-HVSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNKKAMRSTAMVAVD 69
EK K KS + EQ LV++TL H YPLDY F S E WV L K K M+A+D
Sbjct: 87 EKFKKKSLDETAEQRLVRMTLTHDEYPLDYLFPSNAEDWVRTGLGKKKMEPTKIEMIAID 146
Query: 70 CEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETVTCTLA 129
CEMVLCEDG+EA+V V VD +LKV L + VKP++ +VDYRT +TG++++DLE T ++
Sbjct: 147 CEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEKATISVV 206
Query: 130 DIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQ-SLDGSIH----RKPSL 184
DIQ+K+ +S TILVG SL++DL+VLK+DH RV+DT+ +F+ + DG+ ++PSL
Sbjct: 207 DIQEKLLMFISEDTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLRLKRPSL 266
Query: 185 NGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHVSESDMTK 244
N LC+ +LGYEV+++G PHNC+ DA AAMKLVLA + +G + P + + + E++ +K
Sbjct: 267 NYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNGAETSVPLS---KEMLEAEKSK 323
Query: 245 LLLHGIPTSVNIETLHKIVPGDFTTEVKPSRKGQRAKYSALATFKNQQEAYEAYENVQGS 304
L LH IP +V E L+ +V D EVKPS+K R YSA+ FK+ +EA +A+EN+ G
Sbjct: 324 LYLHRIPCNVPYEELNGVVSRDIPHEVKPSKKQDRHYYSAIVVFKSPEEANQAFENIAGD 383
Query: 305 QTKDSFGRPQKEVMFQPSTGMT-VSLFVRKMTADE 338
KDS G QK++ +PS+ + + VRKM D+
Sbjct: 384 FGKDSRGLSQKQIFLEPSSSEPRLYVLVRKMVEDD 418
>AT5G67240.2 | Symbols: SDN3 | small RNA degrading nuclease 3 |
chr5:26824454-26828098 REVERSE LENGTH=762
Length = 762
Score = 293 bits (751), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 164/365 (44%), Positives = 227/365 (62%), Gaps = 44/365 (12%)
Query: 1 MRHHSNQYSVEKLKDKS--HVSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNK- 57
M+ +N+ +EK K ++ +PEQ LV++T+ H YP +Y+F S E W + L K K
Sbjct: 78 MQCGANRELIEKFKQETPDKETPEQRLVRLTITHDDYPGNYTFPSYAEDWYVTELGKKKS 137
Query: 58 KAMRSTAMVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVS 117
K ++ST M+++DCEMV CEDG++ALV V VD +LKV L K VKPDK ++DY+T++TGV+
Sbjct: 138 KVIKSTRMLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVT 197
Query: 118 SRDLETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGS 177
+ DLE T ++ADIQKK++R LS GTILVGH L NDL+VL++DH RV+DT+Y
Sbjct: 198 AEDLERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSY-------- 249
Query: 178 IHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLV---- 233
+VLG EVR GA HNC+ DA AAMKLVLA ++ G TL+
Sbjct: 250 ------------SVLGQEVRMDGAAHNCVHDAAAAMKLVLAAVEKGA-----ATLIQPTE 292
Query: 234 ---------QEHVSESDMTKLLLHGIPTSVNIETLHKIVPGDFTTEVKPSRKGQRAKYSA 284
QE E+ +L LH IP V E LH ++ G+FT VKP + G + +A
Sbjct: 293 EMMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEELHGVLSGNFTLVVKPPKTGGYS--TA 350
Query: 285 LATFKNQQEAYEAYENVQGSQTKDSFGRPQKEVMFQPSTGMTVSLFVRKMTADE-PDNLL 343
+ F + +EA EA+ENV+G KD G PQK+ + + S+G+ VSLFVRKM D+ P +
Sbjct: 351 VVDFSSPEEANEAFENVEGDVAKDKSGLPQKKAVLKLSSGLAVSLFVRKMVQDDSPCEIS 410
Query: 344 QSKRA 348
S+RA
Sbjct: 411 TSERA 415
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 8/136 (5%)
Query: 239 ESDMTKLLLHGIPTSVNIETLHKIVPGDFTTEVKP-SRKGQRAKYSALATFKNQQEAYEA 297
E+D TKL LH IP V + LH ++ GDFT +VKP RKG Y+A+ F + +EA EA
Sbjct: 445 EADKTKLFLHKIPHDVPSQELHGVLNGDFTLDVKPPKRKG--GYYNAVVDFNSPEEANEA 502
Query: 298 YENVQGSQTKDSFGRPQKEVMFQPSTGMTVSLFVRKMTADE-PDNLLQSKRALQVDEADE 356
+ENV+G KD G PQK V+F+ S+G VSL+VRKM D+ P + +KRA +E
Sbjct: 503 FENVEGDVVKDKTGLPQKMVVFKLSSGSGVSLYVRKMVHDDSPGEISTTKRA----RTEE 558
Query: 357 AVNASKKAKTVPQIEE 372
+ +SK+ KT + EE
Sbjct: 559 SNMSSKRQKTEDESEE 574
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 108/209 (51%), Gaps = 42/209 (20%)
Query: 239 ESDMTKLLLHGIPTSVNIETLHKIVPGDFTTEVKPSRKGQRAKYSALATFKNQQEAYEAY 298
E+D TKLLLH IP +V + L ++ G FT EV P ++ R Y+A+ TF + +EA +A+
Sbjct: 584 EADKTKLLLHKIPLNVPSQELKVVITGQFTLEVMPPKRKGRY-YNAVVTFNSPEEANKAF 642
Query: 299 ENVQGSQTKDSFGRPQKEVMFQPSTGMTVSLFVRKMTADEPDNLLQSKRALQVDEADEAV 358
E V+G K+ G QK V F+ S+G L+VRKM DE +E EA
Sbjct: 643 EKVKGEAVKEKGGLAQKMVAFKLSSGSGACLYVRKMVQDES------------EETKEA- 689
Query: 359 NASKKAKTVPQIEEDALIGSTKGDTCTHLKEIEALNEQLKQKDL---------EIESLRE 409
NA+ E+D HLKE+E L E+LK + EIE L++
Sbjct: 690 NAN-------HCEDD------------HLKEMEELKEKLKAMEFAISCEGHSKEIEELKQ 730
Query: 410 QLRKRDFEVSKLHIMISSLKKRTDKTRNK 438
+L ++ ++ +I++LK + +K ++K
Sbjct: 731 KLNAKEHQIQAQDKIIANLKMKLEKKQSK 759
>AT5G05540.2 | Symbols: SDN2 | small RNA degrading nuclease 2 |
chr5:1636419-1638256 FORWARD LENGTH=352
Length = 352
Score = 242 bits (618), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/268 (48%), Positives = 182/268 (67%), Gaps = 9/268 (3%)
Query: 11 EKLKDKS-HVSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNKKAMRSTAMVAVD 69
EK K KS + EQ LV++TL H YPLDY F S E WV L K K M+A+D
Sbjct: 87 EKFKKKSLDETAEQRLVRMTLTHDEYPLDYLFPSNAEDWVRTGLGKKKMEPTKIEMIAID 146
Query: 70 CEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETVTCTLA 129
CEMVLCEDG+EA+V V VD +LKV L + VKP++ +VDYRT +TG++++DLE T ++
Sbjct: 147 CEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEKATISVV 206
Query: 130 DIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQ-SLDGSIH----RKPSL 184
DIQ+K+ +S TILVG SL++DL+VLK+DH RV+DT+ +F+ + DG+ ++PSL
Sbjct: 207 DIQEKLLMFISEDTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLRLKRPSL 266
Query: 185 NGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHVSESDMTK 244
N LC+ +LGYEV+++G PHNC+ DA AAMKLVLA + +G + P + + + E++ +K
Sbjct: 267 NYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNGAETSVPLS---KEMLEAEKSK 323
Query: 245 LLLHGIPTSVNIETLHKIVPGDFTTEVK 272
L LH IP +V E L+ +V D EVK
Sbjct: 324 LYLHRIPCNVPYEELNGVVSRDIPHEVK 351
>AT3G50090.1 | Symbols: | Exonuclease family protein |
chr3:18575432-18577336 FORWARD LENGTH=322
Length = 322
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 192/327 (58%), Gaps = 28/327 (8%)
Query: 5 SNQYSVEKLKDKSHV--SPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINL-RKNKKAMR 61
+N+ + K K +S SPEQ LV++T ++P Y +D+ F S + W + ++ K M
Sbjct: 12 ANRLMIAKFKKESPANDSPEQRLVRLTNENPQYNVDFLFHSYSKDWFVSDVGMKMSNVMI 71
Query: 62 STAMVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDL 121
M+A+DCEMVLCEDGTE +V V VD NLKV L + VKP K +VDYRT +TGV++ D+
Sbjct: 72 PNQMLALDCEMVLCEDGTEGVVRVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAEDV 131
Query: 122 ETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHRK 181
+ T +L DIQ+K++ LS G IL+ DH V+DT+ +F+ + R+
Sbjct: 132 QKATLSLVDIQEKLRPFLSAGAILI-------------DHPIVIDTSLVFKYPNSRKLRR 178
Query: 182 PSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHVSESD 241
PSLN LC +VLGYEV++ G H+C+ DA AAMKL LA IK VD T E++
Sbjct: 179 PSLNTLCMSVLGYEVQKAGVSHHCVHDAAAAMKLALAVIKKRVDTTITLT------KEAE 232
Query: 242 MTKLLLHGIPTSVNIETLH-----KIVPGDFTTEVKPSRKGQRAKYSALATFKNQQEAYE 296
++L LH IP ++ E L K P +FT +VKP+ K Q Y A+ F + EA +
Sbjct: 233 KSRLFLHRIPHHLSSEELKKDLALKFFPKNFTIDVKPA-KTQGGYYCAVVIFGSSVEANQ 291
Query: 297 AYENVQGSQTKDSFGRPQKEVMFQPST 323
A+ENV G + DS G PQK + ST
Sbjct: 292 AFENVNGYKETDSSGLPQKLISCSIST 318
>AT5G25800.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr5:8979761-8982724
REVERSE LENGTH=567
Length = 567
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 65 MVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETV 124
+VA+DCEM + ++G E L V +VD +V L K V P I DY T +G+++ +E V
Sbjct: 215 IVALDCEMCITKEGLE-LTRVTLVDIQGQVLLDKLVMPTNPITDYNTRYSGITAVMMEGV 273
Query: 125 TCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHRKPSL 184
T TL DIQ++ +L+ TILVGHSL+NDL LK+ H V+DTA +++ G + K L
Sbjct: 274 TTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISHNLVIDTAVLYKHPHGRSY-KTKL 332
Query: 185 NGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFP 229
L + L E++E + H+ +DA AAM L L +IKHG D P
Sbjct: 333 RILAKKFLAREIQESESGHDSAEDAKAAMDLALLKIKHGPDFGSP 377
>AT3G15080.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:5074319-5076327
FORWARD LENGTH=275
Length = 275
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 82/156 (52%), Gaps = 9/156 (5%)
Query: 63 TAMVAVDCEMVLCEDGTE-ALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDL 121
T VA+DCEMV GT+ AL V +V+ V + V+P + +VD+RT ++G+ RDL
Sbjct: 81 TDEVAMDCEMVGVSQGTKSALGRVTLVNKWGNVLYDEFVRPVEHVVDFRTSISGIRPRDL 140
Query: 122 ETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVR--VVDTAYIFQSLDGSIH 179
Q K+ L+ G ILVGH+L NDL+ L L H + + DT L G
Sbjct: 141 RKAK-DFRVAQTKVAELIK-GKILVGHALHNDLKALLLTHPKKDIRDTGEYQPFLKGKTR 198
Query: 180 RKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKL 215
+ SL L +LG ++ + H +DDA AAM L
Sbjct: 199 K--SLKHLASEILGADI--QNGEHCPIDDARAAMML 230
>AT3G27970.1 | Symbols: | Exonuclease family protein |
chr3:10389609-10391544 FORWARD LENGTH=357
Length = 357
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 86/181 (47%), Gaps = 27/181 (14%)
Query: 41 FQSIDEGWV--IINLRKNKKAM------RSTAMVAVDCEMVLC-EDGT-EALVEVCVVDH 90
F S++ G + L KAM RS +VA+ C+MV DG+ + VC+ D
Sbjct: 103 FSSVNSGLTTRMAALGLRDKAMIDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDE 162
Query: 91 NLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETVTCTLADIQKKMKRLLSNG-------- 142
+ V H VKP A+ YR E TG+ +L L +Q+K++ L NG
Sbjct: 163 SDNVIFHTYVKPSMAVTSYRYETTGIRPENLRDAM-PLKQVQRKIQEFLCNGEPMWKIRP 221
Query: 143 -----TILVGHSLDNDLRVLKLDHVR--VVDTAYIFQSLDGSIHRKPSLNGLCQAVLGYE 195
ILVGH LD+DL L+L++ + DTA + L + SL L QA LGY+
Sbjct: 222 RGGKARILVGHGLDHDLDRLQLEYPSSMIRDTA-KYPPLMKTSKLSNSLKYLTQAYLGYD 280
Query: 196 V 196
V
Sbjct: 281 V 281
>AT5G40310.1 | Symbols: | Exonuclease family protein |
chr5:16113272-16115816 REVERSE LENGTH=348
Length = 348
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 23/167 (13%)
Query: 51 INLRKNKK----AMRSTAMVAVDCEMVLC-EDGT-EALVEVCVVDHNLKVKLHKRVKPDK 104
+ LR N + RS +VA+ C+MV DG+ + VC+ D + V H VKP
Sbjct: 108 LGLRNNSTIDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTI 167
Query: 105 AIVDYRTEVTGVSSRDLETVTCTLADIQKKMKRLLSNG-------------TILVGHSLD 151
+ +YR E+TG+ +L L Q+K++ L NG ILVGH LD
Sbjct: 168 PVTNYRYEMTGIRPENLRDAM-RLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLD 226
Query: 152 NDLRVLKLDHVR--VVDTAYIFQSLDGSIHRKPSLNGLCQAVLGYEV 196
N L L+L++ + DTA + L S SL L QA LGY++
Sbjct: 227 NHLDSLQLEYSSSMIRDTAE-YPPLMKSSKLSNSLKYLTQAYLGYDI 272
>AT2G48100.3 | Symbols: | Exonuclease family protein |
chr2:19671245-19672847 FORWARD LENGTH=344
Length = 344
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 36/219 (16%)
Query: 8 YSVEKLKDKSHVSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNKKAMRSTAMVA 67
+++ + K+K H+SP + L T ++P L S R AM A
Sbjct: 96 FALAEHKNKCHLSPPRPLGTSTQRNPSSSLAGS--------------------RLKAM-A 134
Query: 68 VDCEMVLC-EDGT-EALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETVT 125
+DCEMV DGT + VC+VD + V V+P + DYR E+TG++ DL+
Sbjct: 135 LDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKDGM 194
Query: 126 CTLADIQKKMKRLLSNGT-------ILVGHSLDNDLRVLKLDHVR--VVDTAYIFQSLDG 176
L +++++ L G +LVGH L +D+ LKL++ + DTA +
Sbjct: 195 -PLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMKT 253
Query: 177 SIHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKL 215
++ + SL L ++ LGY++ + H +D +AM+L
Sbjct: 254 NLVSQ-SLKYLTKSYLGYKI--QCGKHEVYEDCVSAMRL 289
>AT2G48100.2 | Symbols: | Exonuclease family protein |
chr2:19671245-19672847 FORWARD LENGTH=344
Length = 344
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 36/219 (16%)
Query: 8 YSVEKLKDKSHVSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNKKAMRSTAMVA 67
+++ + K+K H+SP + L T ++P L S R AM A
Sbjct: 96 FALAEHKNKCHLSPPRPLGTSTQRNPSSSLAGS--------------------RLKAM-A 134
Query: 68 VDCEMVLC-EDGT-EALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETVT 125
+DCEMV DGT + VC+VD + V V+P + DYR E+TG++ DL+
Sbjct: 135 LDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKDGM 194
Query: 126 CTLADIQKKMKRLLSNGT-------ILVGHSLDNDLRVLKLDHVR--VVDTAYIFQSLDG 176
L +++++ L G +LVGH L +D+ LKL++ + DTA +
Sbjct: 195 -PLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMKT 253
Query: 177 SIHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKL 215
++ + SL L ++ LGY++ + H +D +AM+L
Sbjct: 254 NLVSQ-SLKYLTKSYLGYKI--QCGKHEVYEDCVSAMRL 289
>AT2G48100.1 | Symbols: | Exonuclease family protein |
chr2:19671245-19672847 FORWARD LENGTH=344
Length = 344
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 36/219 (16%)
Query: 8 YSVEKLKDKSHVSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNKKAMRSTAMVA 67
+++ + K+K H+SP + L T ++P L S R AM A
Sbjct: 96 FALAEHKNKCHLSPPRPLGTSTQRNPSSSLAGS--------------------RLKAM-A 134
Query: 68 VDCEMVLC-EDGT-EALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETVT 125
+DCEMV DGT + VC+VD + V V+P + DYR E+TG++ DL+
Sbjct: 135 LDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKDGM 194
Query: 126 CTLADIQKKMKRLLSNGT-------ILVGHSLDNDLRVLKLDHVR--VVDTAYIFQSLDG 176
L +++++ L G +LVGH L +D+ LKL++ + DTA +
Sbjct: 195 -PLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMKT 253
Query: 177 SIHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKL 215
++ + SL L ++ LGY++ + H +D +AM+L
Sbjct: 254 NLVSQ-SLKYLTKSYLGYKI--QCGKHEVYEDCVSAMRL 289
>AT2G48100.4 | Symbols: | Exonuclease family protein |
chr2:19671245-19672384 FORWARD LENGTH=242
Length = 242
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 31/163 (19%)
Query: 8 YSVEKLKDKSHVSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNKKAMRSTAMVA 67
+++ + K+K H+SP + L T ++P L S R AM A
Sbjct: 96 FALAEHKNKCHLSPPRPLGTSTQRNPSSSLAGS--------------------RLKAM-A 134
Query: 68 VDCEMVLC-EDGT-EALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETVT 125
+DCEMV DGT + VC+VD + V V+P + DYR E+TG++ DL+
Sbjct: 135 LDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKDGM 194
Query: 126 CTLADIQKKMKRLLSNGT-------ILVGHSLDNDLRVLKLDH 161
L +++++ L G +LVGH L +D+ LKL++
Sbjct: 195 -PLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEY 236