Miyakogusa Predicted Gene
- Lj1g3v4691700.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4691700.1 tr|G7L4Y5|G7L4Y5_MEDTR Polyadenylate binding
protein OS=Medicago truncatula GN=MTR_7g102730 PE=4
SV=,80.41,0,RRM_1,RNA recognition motif domain;
PABP,Polyadenylate-binding protein/Hyperplastic disc protein;
se,CUFF.32874.1
(636 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 563 e-161
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 421 e-118
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 420 e-117
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 420 e-117
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 419 e-117
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 409 e-114
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 409 e-114
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 382 e-106
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 328 6e-90
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 252 5e-67
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 115 7e-26
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 112 9e-25
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 111 2e-24
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 110 2e-24
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 108 1e-23
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 106 5e-23
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 106 6e-23
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 105 8e-23
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 102 1e-21
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 99 1e-20
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 95 1e-19
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 95 2e-19
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 95 2e-19
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 94 2e-19
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 94 2e-19
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 92 1e-18
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 88 2e-17
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 84 3e-16
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 84 4e-16
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 80 6e-15
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 1e-14
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 1e-14
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 78 2e-14
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 78 2e-14
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 3e-14
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 77 5e-14
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 6e-14
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 75 1e-13
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 1e-13
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 1e-13
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 3e-13
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 3e-13
AT5G03580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 4e-13
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 4e-13
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 5e-13
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 6e-13
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 7e-13
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 1e-11
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 1e-11
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 68 2e-11
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 68 2e-11
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 68 2e-11
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 68 2e-11
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 2e-11
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 2e-11
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 67 3e-11
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 67 3e-11
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 67 4e-11
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 67 4e-11
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 4e-11
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 5e-11
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 5e-11
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 5e-11
AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-bindi... 67 6e-11
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-10
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-10
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-10
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-10
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 65 2e-10
AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20... 65 2e-10
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 64 2e-10
AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20... 64 3e-10
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-10
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-10
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 4e-10
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 64 4e-10
AT2G47310.1 | Symbols: | flowering time control protein-related... 63 6e-10
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 6e-10
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 6e-10
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 6e-10
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 6e-10
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 6e-10
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fam... 63 7e-10
AT4G25500.4 | Symbols: RSP35, RS40, At-RS40 | arginine/serine-ri... 62 1e-09
AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, ... 62 1e-09
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-09
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 60 4e-09
AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:48... 60 4e-09
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 60 6e-09
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 60 6e-09
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 60 6e-09
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 60 6e-09
AT2G46610.1 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RN... 59 9e-09
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 59 1e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 59 1e-08
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 58 2e-08
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-08
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 58 2e-08
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 58 2e-08
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 58 2e-08
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 58 2e-08
AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM... 57 3e-08
AT5G52040.1 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM... 57 3e-08
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 4e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 4e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 4e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 4e-08
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 6e-08
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting d... 56 7e-08
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 56 7e-08
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 56 7e-08
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 56 7e-08
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 56 7e-08
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 56 7e-08
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 56 7e-08
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 56 7e-08
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 7e-08
AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850077-1... 56 7e-08
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 56 8e-08
AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 56 8e-08
AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 56 8e-08
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 8e-08
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 1e-07
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 55 1e-07
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 55 1e-07
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 55 1e-07
AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 | chr5:2294248-22... 55 1e-07
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 55 2e-07
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 55 2e-07
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 55 2e-07
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 55 2e-07
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 55 2e-07
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-07
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-07
AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 3e-07
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 54 3e-07
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 54 3e-07
AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 1... 54 3e-07
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 54 3e-07
AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 | chr1:... 54 3e-07
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 4e-07
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 54 5e-07
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 54 5e-07
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 5e-07
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-07
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-07
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-07
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-07
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 7e-07
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 53 8e-07
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:... 53 8e-07
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 52 1e-06
AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20... 52 1e-06
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 52 2e-06
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 52 2e-06
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT4G25500.3 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, ... 51 3e-06
AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |... 50 4e-06
AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) fami... 50 5e-06
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 9e-06
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 49 9e-06
AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 9e-06
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 563 bits (1452), Expect = e-161, Method: Compositional matrix adjust.
Identities = 300/624 (48%), Positives = 400/624 (64%), Gaps = 48/624 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDLHP +++ L+DAFAEFK+L SVR+C+D+S+GRSLCYGY NFLS QDA AIE K
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N+S+LNGK+IRV+WS R PD R++ +GNVFVKNL ESV ++ L+++FKK+GNI+S KV
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT 145
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
+DGKS+GYGFVQFE E++A+AAI+ LN + + DK+IYVG+F+KK++R+ P+ YTNL
Sbjct: 146 LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRV--KPEEKYTNL 203
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
YMKNLD D++E LL+EKF+ FGKIVSLAI+KDEN + +G+ FVN++NP+DA+RA E +NG
Sbjct: 204 YMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNG 263
Query: 254 SQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDH 313
++ GSK LYV RAQKKAERE++L QF+EK +EQ + K SNIYVKN++ V++EELR H
Sbjct: 264 TKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKH 323
Query: 314 FSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKE 373
FS CG+ITS K+M DEKG SKGFGFVCFSTPEEA AV TFHG MFHGKPLYVA+AQ+KE
Sbjct: 324 FSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKE 383
Query: 374 DRQAQLQLQYAQKIAGLAGPSTAII-PGGYPPFYYTATGVVPHVPHRAGLMYQ--PLAVR 430
DR+ QLQ+Q+ ++ S+A + PG Y P YYT T G++YQ PL +
Sbjct: 384 DRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNT--------HPGMVYQSYPLMWK 435
Query: 431 PGWRANGFAPPSRSFQQSPIPASQVAXXXXXXXXXXXXXXXHAGSQGNTHSVNMXXXXXX 490
P S + P+ A+ G +
Sbjct: 436 SANMIGSSYPNSEAVTYPPMVAN----------APSKNRQNRIGKLDRNAVSYVPNVYQS 485
Query: 491 XXXXXXXRESSTQQRTGQAKYKASGRQHEMEKGSEFSSSGSNPIGGSQGSEVLHSMLAAA 550
R+ S QQ + + GR EM+K I Q V M
Sbjct: 486 TQMLPLSRDFSKQQHS-----RTYGRGKEMKKS----------IQQRQSETVGMEM---- 526
Query: 551 TPEQQKEILGEHLYMLVQKLKPSQAAKITGMXXXXXXXXXXXXXXXXXXXXAKVEEAVQV 610
++LGE L+ LV+KL+P A KITGM +V+EA +V
Sbjct: 527 ------QLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEV 580
Query: 611 LKNSKNKVSGQDKIHSSFLSAEVA 634
LK+SK ++ + S +L++ +A
Sbjct: 581 LKSSKTNLTAPNTHRSDYLASGIA 604
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 19/186 (10%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEA 250
+LY+ +L +TE +L + F+ F + S+ + KD +G S +G+ N+ + DA A+E
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 251 MNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKG-SNIYVKNIDDNVSDEE 309
N S L K++ V + + + R G N++VKN+ ++V++
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARR-----------------NGVGNVFVKNLPESVTNAV 127
Query: 310 LRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
L+D F G+I S KV E G S+G+GFV F + A+ A+ T + + K +YV
Sbjct: 128 LQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKF 187
Query: 370 QRKEDR 375
+K DR
Sbjct: 188 MKKTDR 193
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/613 (42%), Positives = 351/613 (57%), Gaps = 41/613 (6%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL +++D+QL+D F E + SVRVCRD++T SL YGYVN+ + DA +A++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N+S LNGK+IR+ +S RD R+S +GN+FVKNL +SVD+ L E F G I+S KV
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVAT 167
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
G+S+GYGFVQF++E+SA AIEKLNG +NDKQI+VG F++K ER +TN+
Sbjct: 168 DHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNV 227
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
Y+KNL T+ LK F +G I S + +D +G S+ FGFVN+ENP+DA RA+EA+NG
Sbjct: 228 YVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287
Query: 254 SQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDH 313
+ K YV +AQKK+ERE L+ ++E+ + K+ G N+YVKN+DD V+DE+LR+
Sbjct: 288 KKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLREL 347
Query: 314 FSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKE 373
F+ G+ITS KVM+D G SKG GFV FS EA++ +N +G M GKPLYVALAQRKE
Sbjct: 348 FAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKE 407
Query: 374 DRQAQLQLQYAQK----IAGLAGPSTAIIPGGYPPF---YYTATGVVPHVPHRAGLMYQP 426
+R+A+LQ Q++Q I G+ GP I GG P + G P +PH+ G YQP
Sbjct: 408 ERRAKLQAQFSQMRPAFIPGV-GPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQP 466
Query: 427 LAVRPGWRANGFAPP-SRSFQQSPIPASQVAXXXXXXXXXXXXXXXHAGSQGNTHSVNMX 485
V PG R F P + QQ P P + + G + H M
Sbjct: 467 QLV-PGMRPAFFGGPMMQPGQQGPRPGGRRSGD---------------GPMRHQHQQPMP 510
Query: 486 XXXXXXXXXXXXRESSTQQRTGQAKYKASGRQH---EMEKGSEFSSSGSNPIGGSQGSEV 542
+ R +Y + GR M G + N + SQ
Sbjct: 511 YM-----------QPQMMPRGRGYRYPSGGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSA 559
Query: 543 --LHSMLAAATPEQQKEILGEHLYMLVQKLKPSQAAKITGMXXXXXXXXXXXXXXXXXXX 600
L + LA ATP QQ+ +LGE LY LV +++ AAK+TGM
Sbjct: 560 GQLATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEAL 619
Query: 601 XAKVEEAVQVLKN 613
AKV EA+ VL+N
Sbjct: 620 NAKVSEALDVLRN 632
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 107/190 (56%), Gaps = 17/190 (8%)
Query: 189 SYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRA 247
+ +LY+ +LD ++T++ L + F+ ++VS+ + +D S G+G+VNY N DDA++A
Sbjct: 44 ALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKA 103
Query: 248 LEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSD 307
++ +N S L K++ + + + + + N++VKN+D +V +
Sbjct: 104 MQKLNYSYLNGKMIRITYSSRDSSAR----------------RSGVGNLFVKNLDKSVDN 147
Query: 308 EELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVA 367
+ L + FS CG+I S KV D G S+G+GFV F T + A A+ +G + + K ++V
Sbjct: 148 KTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVG 207
Query: 368 LAQRKEDRQA 377
RKE+R++
Sbjct: 208 PFLRKEERES 217
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/436 (48%), Positives = 289/436 (66%), Gaps = 9/436 (2%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL ++D+QL +AF + + SVRVCRD +T RSL YGYVN+ +PQDA +A+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N LNG+ IRV++S RDP +RKS +GN+F+KNL +S+D L E F +G ILS KV +
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAV 166
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
G+SKGYGFVQ++++E+A AI+KLNG +NDKQ+YVG FV K +R G +TN+
Sbjct: 167 DPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNV 226
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
Y+KNL +++ L + F FG S I +D G SKGFGFVN+EN DDA RA++A+NG
Sbjct: 227 YVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
Query: 254 SQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDH 313
K +V +AQKK+ERE L +FE+ KE K +GSN+YVKN+D++V+D++LR+H
Sbjct: 287 KTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREH 346
Query: 314 FSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKE 373
F+ G+ITS KVM+D G+S+G GFV FSTPEEA +A+ +G M KPLYVALAQRKE
Sbjct: 347 FAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKE 406
Query: 374 DRQAQLQLQYAQ----KIAGLAGPSTAIIPGGYPPF---YYTATGVVPHVPHRAGLMYQP 426
DR+A+LQ Q++Q + GP + P G PP + G +P + G YQ
Sbjct: 407 DRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIP-QPGFGYQQ 465
Query: 427 LAVRPGWRANGFAPPS 442
V PG R G P+
Sbjct: 466 QLV-PGMRPGGSPMPN 480
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 17/177 (9%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE 249
T+LY+ +LD +T++ L E F+ G++VS+ + +D S G+G+VNY P DA RAL
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 250 AMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEE 309
+N L + + V + R + K NI++KN+D ++ +
Sbjct: 105 ELNFMALNGRAIRVMYS----------------VRDPSLRKSGVGNIFIKNLDKSIDHKA 148
Query: 310 LRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
L + FSA G I S KV D G SKG+GFV + T E A A++ +G + + K +YV
Sbjct: 149 LHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 543 LHSMLAAATPEQQKEILGEHLYMLVQKLKPSQAAKITGMXXXXXXXXXXXXXXXXXXXXA 602
L + LA A PEQQ+ +LGE+LY LV++L+P AAK+TGM A
Sbjct: 577 LATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKA 636
Query: 603 KVEEAVQVLKNSKNKVSG 620
KV EA+ VL++ + +G
Sbjct: 637 KVTEAMDVLRSVAQQQAG 654
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/436 (48%), Positives = 289/436 (66%), Gaps = 9/436 (2%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL ++D+QL +AF + + SVRVCRD +T RSL YGYVN+ +PQDA +A+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N LNG+ IRV++S RDP +RKS +GN+F+KNL +S+D L E F +G ILS KV +
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAV 166
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
G+SKGYGFVQ++++E+A AI+KLNG +NDKQ+YVG FV K +R G +TN+
Sbjct: 167 DPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNV 226
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
Y+KNL +++ L + F FG S I +D G SKGFGFVN+EN DDA RA++A+NG
Sbjct: 227 YVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
Query: 254 SQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDH 313
K +V +AQKK+ERE L +FE+ KE K +GSN+YVKN+D++V+D++LR+H
Sbjct: 287 KTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREH 346
Query: 314 FSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKE 373
F+ G+ITS KVM+D G+S+G GFV FSTPEEA +A+ +G M KPLYVALAQRKE
Sbjct: 347 FAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKE 406
Query: 374 DRQAQLQLQYAQ----KIAGLAGPSTAIIPGGYPPF---YYTATGVVPHVPHRAGLMYQP 426
DR+A+LQ Q++Q + GP + P G PP + G +P + G YQ
Sbjct: 407 DRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIP-QPGFGYQQ 465
Query: 427 LAVRPGWRANGFAPPS 442
V PG R G P+
Sbjct: 466 QLV-PGMRPGGSPMPN 480
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 17/177 (9%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE 249
T+LY+ +LD +T++ L E F+ G++VS+ + +D S G+G+VNY P DA RAL
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 250 AMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEE 309
+N L + + V + R + K NI++KN+D ++ +
Sbjct: 105 ELNFMALNGRAIRVMYS----------------VRDPSLRKSGVGNIFIKNLDKSIDHKA 148
Query: 310 LRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
L + FSA G I S KV D G SKG+GFV + T E A A++ +G + + K +YV
Sbjct: 149 LHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 543 LHSMLAAATPEQQKEILGEHLYMLVQKLKPSQAAKITGMXXXXXXXXXXXXXXXXXXXXA 602
L + LA A PEQQ+ +LGE+LY LV++L+P AAK+TGM A
Sbjct: 577 LATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKA 636
Query: 603 KVEEAVQVLKNSKNKVSG 620
KV EA+ VL++ + +G
Sbjct: 637 KVTEAMDVLRSVAQQQAG 654
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/438 (49%), Positives = 289/438 (65%), Gaps = 12/438 (2%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL +++D+QL DAF + + +VRVCRD T RSL YGYVNF +PQDA +AI+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N+ L GK IRV++S RDP VR+S GN+F+KNL ES+D L + F +GNI+S KV +
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAV 157
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
G+SKGYGFVQ+ +EESA AIEKLNG +NDKQ+YVG F+++ ER +TN+
Sbjct: 158 DSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNV 217
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
Y+KNL T+ LK F +GKI S + KD G SKGFGFVN+EN DDA RA+E++NG
Sbjct: 218 YVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277
Query: 254 SQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDH 313
+ K YV RAQKK+ERE L ++E+ KE K++ SN+YVKN+D ++SDE+L++
Sbjct: 278 HKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEI 337
Query: 314 FSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKE 373
FS G++TS+KVM+D G SKG GFV F+TPEEA +A++ G M KPLYVA+AQRKE
Sbjct: 338 FSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKE 397
Query: 374 DRQAQLQLQYAQ----KIAGLAGPSTAIIPGGYPP-----FYYTATGVVPHVPHRAGLMY 424
DR+ +LQ Q++Q + GP + P G P FY A + +P + G Y
Sbjct: 398 DRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAM--IPPQPGYGY 455
Query: 425 QPLAVRPGWRANGFAPPS 442
Q V PG R G PS
Sbjct: 456 QQQLV-PGMRPGGGPVPS 472
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 105/188 (55%), Gaps = 17/188 (9%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE 249
T+LY+ +LD ++T++ L + F G +V++ + +D S G+G+VN+ NP DA RA++
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 250 AMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEE 309
+N L K + V + +H R + + NI++KN+D+++ +
Sbjct: 96 ELNYIPLYGKPIRV-----------MYSH-----RDPSVRRSGAGNIFIKNLDESIDHKA 139
Query: 310 LRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
L D FS+ G+I S KV D G SKG+GFV ++ E A KA+ +G + + K +YV
Sbjct: 140 LHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPF 199
Query: 370 QRKEDRQA 377
R+++R +
Sbjct: 200 LRRQERDS 207
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 290 KYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEAN 348
++ +++YV ++D NV+D +L D F G++ + +V +D S G+G+V F+ P++A
Sbjct: 32 QFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAA 91
Query: 349 KAVNTFHGFMFHGKPLYVALAQR 371
+A+ + +GKP+ V + R
Sbjct: 92 RAIQELNYIPLYGKPIRVMYSHR 114
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 543 LHSMLAAATPEQQKEILGEHLYMLVQKLKPSQAAKITGMXXXXXXXXXXXXXXXXXXXXA 602
L S L+ ATPEQQ+ +LGE LY LV++++ AAK+TGM A
Sbjct: 543 LASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKA 602
Query: 603 KVEEAVQVLKN 613
KV EA+ VL++
Sbjct: 603 KVAEAMDVLRS 613
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/632 (39%), Positives = 353/632 (55%), Gaps = 50/632 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL P ++++ L D F + + ++RVCRD T RSL Y YVNF +P+DA +A+E
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 119
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N++ + + IR++ S RDP R S GNVF+KNL S+D+ L E F +G ILS KV M
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAM 179
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILP--GPDASYT 191
G+SKGYGFVQFE EE+A AAI+KLNG +NDKQ++VG FV++ +R G S+T
Sbjct: 180 DVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFT 239
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
N+Y+KNL +IT+ LK+ F +G I S + KD++G S+ FGFVN+ +P+ A A+E M
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
NG LG +LYV RAQKK++RE L +FE++R + K +GSN+Y+KN+DD+V+DE+L+
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 312 DHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQR 371
+ FS G++TS KVM + +G+S+GFGFV +S PEEA A+ +G M KPLYVALAQR
Sbjct: 360 EMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQR 419
Query: 372 KEDRQAQLQLQYAQ-KIAGLAGPSTAII-------PGG------YPPFY-YTATGVVPHV 416
KE+RQA LQ + Q + G P + + PGG +P F + G+VP
Sbjct: 420 KEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQ 479
Query: 417 PHRAGLMYQPL-AVRPGWRANGFAPP-SRSFQQSPIP-------ASQVAXXXXXXXXXXX 467
P G Q + +RPG F P Q P P A+ +
Sbjct: 480 PMGYGYQVQFMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQMLQQ 539
Query: 468 XXXXHAGSQGNTHSVNMXXXXXXXXXXXXXRESSTQQRTGQAKYKASGRQHEMEKGSEFS 527
G GN + E+S Q AS H +
Sbjct: 540 NASRFMGGAGNRRN---------------GMEASAPQGIIPLPLNASANSHNAPQ----R 580
Query: 528 SSGSNPIGGSQGSEVLHSMLAAATPEQQKEILGEHLYMLVQKLKPSQAAKITGMXXXXXX 587
S P+ S+ L S LA A+P++ +LG+HLY LV++ +P+ AAK+TGM
Sbjct: 581 SHKPTPLTISK----LASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQ 636
Query: 588 XXXXXXXXXXXXXXAKVEEAVQVLKNSKNKVS 619
AKV EA+ VL+ S + +
Sbjct: 637 AEILHLLESPEALKAKVSEALDVLRRSADPAA 668
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 16/185 (8%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEA 250
++LY+ +LD + E+ L + F+ + +L + +D S G+ +VN+ NP+DA RA+E+
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 118
Query: 251 MNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEEL 310
+N + + R+R + + L KG N+++KN+D ++ ++ L
Sbjct: 119 LNYAPI---------------RDRPIRIMLSNRDPSTRLSGKG-NVFIKNLDASIDNKAL 162
Query: 311 RDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
+ FS+ G+I S KV D G SKG+GFV F E A A++ +G + + K ++V
Sbjct: 163 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 222
Query: 371 RKEDR 375
R++DR
Sbjct: 223 RRQDR 227
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/632 (39%), Positives = 353/632 (55%), Gaps = 50/632 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL P ++++ L D F + + ++RVCRD T RSL Y YVNF +P+DA +A+E
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 119
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N++ + + IR++ S RDP R S GNVF+KNL S+D+ L E F +G ILS KV M
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAM 179
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILP--GPDASYT 191
G+SKGYGFVQFE EE+A AAI+KLNG +NDKQ++VG FV++ +R G S+T
Sbjct: 180 DVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFT 239
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
N+Y+KNL +IT+ LK+ F +G I S + KD++G S+ FGFVN+ +P+ A A+E M
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
NG LG +LYV RAQKK++RE L +FE++R + K +GSN+Y+KN+DD+V+DE+L+
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 312 DHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQR 371
+ FS G++TS KVM + +G+S+GFGFV +S PEEA A+ +G M KPLYVALAQR
Sbjct: 360 EMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQR 419
Query: 372 KEDRQAQLQLQYAQ-KIAGLAGPSTAII-------PGG------YPPFY-YTATGVVPHV 416
KE+RQA LQ + Q + G P + + PGG +P F + G+VP
Sbjct: 420 KEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQ 479
Query: 417 PHRAGLMYQPL-AVRPGWRANGFAPP-SRSFQQSPIP-------ASQVAXXXXXXXXXXX 467
P G Q + +RPG F P Q P P A+ +
Sbjct: 480 PMGYGYQVQFMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQMLQQ 539
Query: 468 XXXXHAGSQGNTHSVNMXXXXXXXXXXXXXRESSTQQRTGQAKYKASGRQHEMEKGSEFS 527
G GN + E+S Q AS H +
Sbjct: 540 NASRFMGGAGNRRN---------------GMEASAPQGIIPLPLNASANSHNAPQ----R 580
Query: 528 SSGSNPIGGSQGSEVLHSMLAAATPEQQKEILGEHLYMLVQKLKPSQAAKITGMXXXXXX 587
S P+ S+ L S LA A+P++ +LG+HLY LV++ +P+ AAK+TGM
Sbjct: 581 SHKPTPLTISK----LASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQ 636
Query: 588 XXXXXXXXXXXXXXAKVEEAVQVLKNSKNKVS 619
AKV EA+ VL+ S + +
Sbjct: 637 AEILHLLESPEALKAKVSEALDVLRRSADPAA 668
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 16/185 (8%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEA 250
++LY+ +LD + E+ L + F+ + +L + +D S G+ +VN+ NP+DA RA+E+
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 118
Query: 251 MNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEEL 310
+N + + R+R + + L KG N+++KN+D ++ ++ L
Sbjct: 119 LNYAPI---------------RDRPIRIMLSNRDPSTRLSGKG-NVFIKNLDASIDNKAL 162
Query: 311 RDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
+ FS+ G+I S KV D G SKG+GFV F E A A++ +G + + K ++V
Sbjct: 163 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 222
Query: 371 RKEDR 375
R++DR
Sbjct: 223 RRQDR 227
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/374 (50%), Positives = 260/374 (69%), Gaps = 3/374 (0%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LY GDL P +++A L D F N+ SVRVCRD + RSL Y Y+NF +P DA +A+E
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N++ L + IR++ S RDP R S GN+F+KNL S+D+ L E F +G ILS KV M
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILP--GPDASYT 191
G+SKGYGFVQFE EESA AAI+KLNG +NDKQ++VG F+++ ER P +T
Sbjct: 170 DVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFT 229
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
N+Y+KNL +I E L++ F FG I S + +D++G S+ FGFVN+E + A A+E M
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
NG LG +LYV RAQKK+ERE L +FE++R + K +G+N+Y+KN+DD+V DE+L+
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 312 DHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQR 371
+ FS G++TS+KVM + +G+S+GFGFV +S PEEA +A++ +G M KPLY+ALAQR
Sbjct: 350 EMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQR 409
Query: 372 KEDRQAQLQLQYAQ 385
KEDR+A LQ ++Q
Sbjct: 410 KEDRRAHLQALFSQ 423
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 151/286 (52%), Gaps = 14/286 (4%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
+++ +L V + L ++FK N++S +V + +S GY ++ F + A A+E L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL 220
N + + D+ I + + L G N+++KNLD I L E FSSFG I+S
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSG----KGNIFIKNLDASIDNKALFETFSSFGTILSC 165
Query: 221 AISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQF 280
++ D G SKG+GFV +E + A+ A++ +NG + K ++V ++ ER
Sbjct: 166 KVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER-------- 217
Query: 281 EEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVC 340
R E + +N+YVKN+ + ++ELR F G I+SA VM+D+ G S+ FGFV
Sbjct: 218 --ARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query: 341 FSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQK 386
F E A AV +G LYV AQ+K +R+ +L+ ++ Q+
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQE 321
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 112/199 (56%), Gaps = 22/199 (11%)
Query: 183 LPGP----DASYTN--LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFV 236
LP P D ++ N LY +LD +TEA L + F +VS+ + +D+N S G+ ++
Sbjct: 35 LPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYI 94
Query: 237 NYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNI 296
N+ NP+DA RA+EA+N + L + + + +L+++ R L KG NI
Sbjct: 95 NFSNPNDAYRAMEALNYTPLFDRPIRI-----------MLSNRDPSTR----LSGKG-NI 138
Query: 297 YVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG 356
++KN+D ++ ++ L + FS+ G+I S KV D G SKG+GFV F E A A++ +G
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198
Query: 357 FMFHGKPLYVALAQRKEDR 375
+ + K ++V R+++R
Sbjct: 199 MLMNDKQVFVGHFIRRQER 217
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 328 bits (842), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 188/449 (41%), Positives = 274/449 (61%), Gaps = 20/449 (4%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL PD+++ L D F+ + SV +CR+S TG+S+CY Y+NF SP A A+
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 74 NHSMLNGKVIRVLWSRRDPDVRK---SCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSK 130
NHS L GK +R++WS+RD R+ + N++VKNL S+ SS LE +F +G+ILS K
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCK 142
Query: 131 VVMADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASY 190
VV ++G+SKG+GFVQF++E+SA +A L+GS + K+++V +F+ K ER +
Sbjct: 143 VV-EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDS 201
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEA 250
TN+Y+KNL +T+ L FS +G + S+ + +D G S+GFGFVN+ NP++AK+A+E+
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 251 MNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEEL 310
+ G QLGSK L+V +A KK ER +L +F + + + SN+YVKN+ +++++ L
Sbjct: 262 LCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKP-NMRWSNLYVKNLSESMNETRL 320
Query: 311 RDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
R+ F G I SAKVM E G SKGFGFVCFS EE+ +A +GF+ GKP+ V +A+
Sbjct: 321 REIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAE 380
Query: 371 RKEDRQAQLQLQYAQKIAGLAGPSTAI-IPGGYPPFYYTATGVVPHVPHRAGLMYQPLAV 429
RKEDR +LQ QY Q A P P P A V+ +V G +QP V
Sbjct: 381 RKEDRIKRLQ-QYFQ-----AQPRQYTQAPSAPSP----AQPVLSYVSSSYGC-FQPFQV 429
Query: 430 RPGWRANGFAPPSRSFQQ---SPIPASQV 455
+ G P S Q + +PA +V
Sbjct: 430 GTSYYYMGNQVPQMSGHQNITTYVPAGKV 458
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 15/189 (7%)
Query: 190 YTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRAL 248
+ +LY+ +L D+TE L +KFS +VS+ + ++ G S + ++N+++P A A+
Sbjct: 20 FGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAM 79
Query: 249 EAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
+N S L K + + +Q+ R F +N+YVKN+D +++
Sbjct: 80 TRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGF-------------ANLYVKNLDSSITSS 126
Query: 309 ELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVAL 368
L F GSI S KV+ +E G SKGFGFV F T + A A + HG M +GK L+VA
Sbjct: 127 CLERMFCPFGSILSCKVV-EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAK 185
Query: 369 AQRKEDRQA 377
K++R A
Sbjct: 186 FINKDERAA 194
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 147/317 (46%), Positives = 195/317 (61%), Gaps = 8/317 (2%)
Query: 70 IEVKNHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSS 129
+EV N+ L GK +R+++S RDP R S GNVFVKNL ES+D+ L ++F +G +LS
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 130 KVVMADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDAS 189
KV G SKGYGFVQF S+ S A NG+ I ++ I+V FV + + D S
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQW-----DKS 115
Query: 190 --YTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRA 247
+TN+Y+KNL T+A LK F FG+I S + KD G S+ FGFVN+E + A A
Sbjct: 116 RVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTA 175
Query: 248 LEAMNGSQLGSKILYVARAQKKAERERILNHQFE-EKRKEQILKYKGSNIYVKNIDDNVS 306
+E MNG + K L+V RAQ+K R L +FE EK + KG N+YVKN+DD+V
Sbjct: 176 IEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVD 235
Query: 307 DEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
+ +L + FS G+ITS KVM GISKG GFV FST EEA+KA+ +G M KP+YV
Sbjct: 236 NTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
Query: 367 ALAQRKEDRQAQLQLQY 383
+LAQ KE + LQ Q+
Sbjct: 296 SLAQCKEQHKLHLQTQF 312
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 153/282 (54%), Gaps = 17/282 (6%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
++V +L I + QL D F+ F + S +V RD+S G S YG+V F S A
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDAS-GVSKGYGFVQFYSDLSVYTACNFH 91
Query: 74 NHSMLNGKVIRV--LWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKV 131
N +++ + I V SR D + NV+VKNL E+ + L+ +F ++G I S+ V
Sbjct: 92 NGTLIRNQHIHVCPFVSRGQWD-KSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 132 VMADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSER---------- 181
+ +GKS+ +GFV FE E+A AIEK+NG +++K+++VGR +K+ R
Sbjct: 151 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFEL 210
Query: 182 ---ILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNY 238
I NLY+KNLD + L+E FS FG I S + NG+SKG GFV +
Sbjct: 211 EKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEF 270
Query: 239 ENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQF 280
++A +A+ MNG +G+K +YV+ AQ K + + L QF
Sbjct: 271 STSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQF 312
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 150/290 (51%), Gaps = 41/290 (14%)
Query: 14 LYVGDLHPDISDAQLHDAFA--EFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAI- 70
++VGDLH + +A L+ +FA + + + SV+V R+ + G S YG+V F S A + +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 71 EVKNHSMLN-GKVIRVLWS----------RRDPDVRKSCIGNVFVKNLAESVDSSGLEEI 119
E +M N + R+ W+ PD+ ++FV +L+ V + L E
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDL------SIFVGDLSPDVSDNLLHET 216
Query: 120 F-KKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGR--- 174
F +KY ++ ++KVV+ A+ G+SKGYGFV+F E A+ ++NG + + + +G
Sbjct: 217 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 276
Query: 175 -----------FVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAIS 223
++ P D T +++ LD +T+ LK+ F+ FG+IVS+ I
Sbjct: 277 RKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP 336
Query: 224 KDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERE 273
+ KG GFV + N +A+ ALE +NG+ +G + + ++ + A ++
Sbjct: 337 -----VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 381
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 149/292 (51%), Gaps = 26/292 (8%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGN---ILSSKVVM-ADDGKSKGYGFVQFESEESANAAI 157
++V +L +D + L F G+ I+S KV+ ++G S+GYGFV+FES + A+ +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFAS-GDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 158 EKLNGSTI-NDKQIYVGRFVKKS--ERILP--GPDASYTNLYMKNLDLDITEALLKEKFS 212
+ NG+T+ N Q + + S E+ L GPD S +++ +L D+++ LL E FS
Sbjct: 162 REFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLS---IFVGDLSPDVSDNLLHETFS 218
Query: 213 S-FGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKA 270
+ + + + D N G SKG+GFV + + ++ +A+ MNG + S+ + + A +
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR- 277
Query: 271 ERERILNHQFEEKRKEQILKYKG----SNIYVKNIDDNVSDEELRDHFSACGSITSAKVM 326
+ Q + + +G + I+V +D +V+DE+L+ F+ G I S K+
Sbjct: 278 -KTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP 336
Query: 327 KDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQ 378
+ KG GFV F A +A+ +G + + + ++ + ++Q +
Sbjct: 337 -----VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 383
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 19/198 (9%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGK--IVSLAISKDEN-GMSKGFGFVNYENPDDAKRALE 249
+++ +L + EA L F+S + IVS+ + +++N G+S+G+GFV +E+ D A + L
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 250 AMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN--IYVKNIDDNVSD 307
NG+ + + + R + EKR L+ G + I+V ++ +VSD
Sbjct: 163 EFNGTTMPNT--------DQPFRLNWASFSTGEKR----LENNGPDLSIFVGDLSPDVSD 210
Query: 308 EELRDHFSA-CGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLY 365
L + FS S+ +AKV+ D G SKG+GFV F E KA+ +G + +
Sbjct: 211 NLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMR 270
Query: 366 VALAQRKEDRQAQLQLQY 383
+ A ++ Q Q Y
Sbjct: 271 IGPATPRKTNGYQQQGGY 288
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 148/290 (51%), Gaps = 41/290 (14%)
Query: 14 LYVGDLHPDISDAQLHDAF--AEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIE 71
++VGDL + +A L+ AF AE + + S++V R+ G S YG+V F S A + ++
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 72 VKNHSML--NGKVIRVLWS----------RRDPDVRKSCIGNVFVKNLAESVDSSGLEEI 119
N + + + R+ W+ PD+ ++FV +LA V + L E
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDL------SIFVGDLAPDVSDALLHET 218
Query: 120 F-KKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVK 177
F +KY ++ ++KVV+ A+ G+SKGYGFV+F E A+ ++NG + + + +G
Sbjct: 219 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 278
Query: 178 KSER-------ILPG-------PDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAIS 223
+ +P D T +++ LD +T+ LK+ FS FG+IVS+ I
Sbjct: 279 RKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP 338
Query: 224 KDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERE 273
+ KG GFV + N +A+ ALE +NG+ +G + + ++ + A ++
Sbjct: 339 -----VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 383
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 147/293 (50%), Gaps = 28/293 (9%)
Query: 102 VFVKNLAESVDSSGLEEIFK--KYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIE 158
++V +L +D + L F + I+S KV+ +G S+GYGFV+FES + A+ ++
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 159 KLNGSTI-NDKQIY---VGRFVKKSERILP-GPDASYTNLYMKNLDLDITEALLKEKFSS 213
+ NG+ + N Q + F +R+ GPD S +++ +L D+++ALL E FS
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLS---IFVGDLAPDVSDALLHETFSE 221
Query: 214 -FGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKA- 270
+ + + + D N G SKG+GFV + + ++ +A+ MNG + S+ + + A +
Sbjct: 222 KYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT 281
Query: 271 -----ERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKV 325
+ + + F + I + I+V +D +V+DE+L+ FS G I S K+
Sbjct: 282 NGYQQQGGYMPSGAFTRSEGDTI----NTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI 337
Query: 326 MKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQ 378
+ KG GFV F A +A+ +G + + + ++ + ++Q +
Sbjct: 338 P-----VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 385
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 19/198 (9%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGK--IVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
+++ +L + EA L F+S + IVSL + +++ NG S+G+GFV +E+ D A + L+
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 250 AMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN--IYVKNIDDNVSD 307
NG+ + + + R + EKR L+ G + I+V ++ +VSD
Sbjct: 165 EFNGAPMPNT--------DQPFRLNWASFSTGEKR----LENNGPDLSIFVGDLAPDVSD 212
Query: 308 EELRDHFSA-CGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLY 365
L + FS S+ +AKV+ D G SKG+GFV F E KA+ +G + +
Sbjct: 213 ALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMR 272
Query: 366 VALAQRKEDRQAQLQLQY 383
+ A ++ Q Q Y
Sbjct: 273 IGPATPRKTNGYQQQGGY 290
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 155/295 (52%), Gaps = 39/295 (13%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VGDL + + LH F+ ++SV+V R+ T +S YG+V FLS A + ++
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 74 NHSML--NGKVIRVLWSRRDPDVRKSCIG----NVFVKNLAESVDSSGLEEIFK-KYGNI 126
+ S++ + + R+ W+ +++ +VFV +L+ V L E F +Y ++
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 127 LSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVG-----RFVKKSE 180
S+KVV+ ++ G+SKGYGFV+F E + A+ ++NG+ +++Q+ VG R + +
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQ 289
Query: 181 R------ILPG-------------PDASYTN--LYMKNLDLDITEALLKEKFSSFGKIVS 219
+ IL G D TN +++ +D D+ + L++ FS FG++VS
Sbjct: 290 QHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVS 349
Query: 220 LAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERER 274
+ I + KG GFV + + A+ A+E++NG+ +G + ++ + ++ R
Sbjct: 350 VKIP-----VGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQWR 399
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 134/283 (47%), Gaps = 36/283 (12%)
Query: 99 IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAI 157
+ ++V +L +D + L F G + S KV+ +S+GYGFV+F S +A +
Sbjct: 107 VKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVL 166
Query: 158 EKLNGSTINDK----QIYVGRFVKKSERILP-GPDASYTNLYMKNLDLDITEALLKEKFS 212
+ +GS + + +I F +R + GPD S +++ +L D+T+ LL E FS
Sbjct: 167 QNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLS---VFVGDLSPDVTDVLLHETFS 223
Query: 213 S-FGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKA 270
+ + S + D N G SKG+GFV + + ++ RAL MNG+ ++ + V A K
Sbjct: 224 DRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK- 282
Query: 271 ERERILNHQFEEKRKEQILKYKGSN-----------------IYVKNIDDNVSDEELRDH 313
I N Q + + GSN I+V ID +V DE+LR
Sbjct: 283 --RAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQP 340
Query: 314 FSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG 356
FS G + S K+ + KG GFV F+ + A A+ + +G
Sbjct: 341 FSQFGEVVSVKIP-----VGKGCGFVQFADRKSAEDAIESLNG 378
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 15/203 (7%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ +L + E L FS G++ S+ + +++ S+G+GFV + + A+ L+
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+GS + + RI F K + +++V ++ +V+D L
Sbjct: 170 SGSVM----------PNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLH 219
Query: 312 DHFS-ACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
+ FS S+ SAKV+ D G SKG+GFV F E ++A+ +G + + V +A
Sbjct: 220 ETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
Query: 370 QRKEDRQAQLQLQYAQKIAGLAG 392
K R Q Q++ + LAG
Sbjct: 280 TPK--RAIANQQQHSSQAVILAG 300
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 147/296 (49%), Gaps = 46/296 (15%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIE-V 72
L+VGDL + + LH F+ ++SV+V R+ T +S YG+V FLS A +A++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 73 KNHSMLNG-KVIRVLW----------SRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFK 121
+M N + R+ W S PD+ ++FV +LA V + L E F
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDL------SIFVGDLAPDVSDAVLLETFA 234
Query: 122 -KYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKK- 178
+Y ++ +KVV+ ++ G+SKGYGFV+F E + A+ ++NG+ + +Q+ VG K
Sbjct: 235 GRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKR 294
Query: 179 --------------------SERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIV 218
+ +++ + +++ LD D+TE L + FS FG++V
Sbjct: 295 AAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVV 354
Query: 219 SLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERER 274
S+ I + KG GFV + N A+ A+ +NG+ +G + ++ + ++ R
Sbjct: 355 SVKIP-----VGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWR 405
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 131/278 (47%), Gaps = 37/278 (13%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
++V +L +D + L F + S KV+ +S+GYGFV+F S +A A++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 161 NGSTINDKQ----IYVGRFVKKSERILP-GPDASYTNLYMKNLDLDITEALLKEKFSS-F 214
+G T+ + + + F +R GPD S +++ +L D+++A+L E F+ +
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLS---IFVGDLAPDVSDAVLLETFAGRY 237
Query: 215 GKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERE 273
+ + D N G SKG+GFV + + ++ RA+ MNG+ S+ + V A K
Sbjct: 238 PSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAA 297
Query: 274 RILNHQFEEKRKEQILKYKG---------------SNIYVKNIDDNVSDEELRDHFSACG 318
+ ++ Q L G S I+V +D +V++E+L FS G
Sbjct: 298 ------YGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFG 351
Query: 319 SITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG 356
+ S K+ + KG GFV F+ + A +A+ +G
Sbjct: 352 EVVSVKIP-----VGKGCGFVQFANRQSAEEAIGNLNG 384
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 17/204 (8%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
L++ +L + E L FS ++ S+ + ++ + S+G+GFV + + A+ AL++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 252 NGSQLGSKILYVARAQKKAERERILNH-QFEEKRKEQILKYKGSNIYVKNIDDNVSDEEL 310
+G + AE+ LN F K +I+V ++ +VSD L
Sbjct: 181 SGVTM-----------PNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVL 229
Query: 311 RDHFSA-CGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVAL 368
+ F+ S+ AKV+ D G SKG+GFV F E ++A+ +G + + V +
Sbjct: 230 LETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGI 289
Query: 369 AQRKEDRQAQLQLQYAQKIAGLAG 392
A K R A Q + LAG
Sbjct: 290 ATPK--RAAAYGQQNGSQALTLAG 311
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 138/288 (47%), Gaps = 35/288 (12%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDL + + L F++ L SV+V R+ TG+ YG++ F+S A + ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 74 NHSMLNGK--VIRVLWSR--RDPDVRKSCIGNVFVKNLAESVDSSGLEEIFK-KYGNILS 128
N + + G R+ W+ V ++FV +LA V L+E F+ Y ++
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 145
Query: 129 SKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNG----------------STINDKQIY 171
+KVV G+SKGYGFV+F E N A+ ++NG + +Q Y
Sbjct: 146 AKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQY 205
Query: 172 VGRFVKKSERILP-----GP---DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAIS 223
V + S P P D + T + + NLD ++TE LK+ FS G+++ + I
Sbjct: 206 VTKVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP 265
Query: 224 KDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAE 271
+KG+G+V ++ A+ A++ M G +G + + ++ ++ +
Sbjct: 266 A-----TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQ 308
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 130/277 (46%), Gaps = 28/277 (10%)
Query: 99 IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAI 157
+ +++ +L VD + L F + G ++S KV+ G+ +GYGF++F S +A +
Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
Query: 158 EKLNGSTINDKQIYVGRFVKKS----ERILPGPDASYTNLYMKNLDLDITEALLKEKFSS 213
+ NG+ + ++ R S +++ GPD S +++ +L D+T+ LL+E F
Sbjct: 83 QTYNGTQMPGTELTF-RLNWASFGSGQKVDAGPDHS---IFVGDLAPDVTDYLLQETFRV 138
Query: 214 FGKIVSLA--ISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK-- 269
V A ++ G SKG+GFV + + RA+ MNG ++ + ++ A K
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Query: 270 --AERERILNHQFEEKRKEQILKYKG--------SNIYVKNIDDNVSDEELRDHFSACGS 319
+++ + + Y + I V N+D NV++EEL+ FS G
Sbjct: 199 VGVQQQYVTKVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGE 258
Query: 320 ITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG 356
+ K+ +KG+G+V F T A +AV G
Sbjct: 259 VIYVKIPA-----TKGYGYVQFKTRPSAEEAVQRMQG 290
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 110/217 (50%), Gaps = 28/217 (12%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEA 250
L++ +L + E L FS G++VS+ + +++ G +G+GF+ + + A+R L+
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 251 MNGSQL-GSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSD-- 307
NG+Q+ G+++ + R+ F +K + +I+V ++ +V+D
Sbjct: 85 YNGTQMPGTELTF-----------RLNWASFGSGQK--VDAGPDHSIFVGDLAPDVTDYL 131
Query: 308 --EELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPL 364
E R H+S S+ AKV+ D G SKG+GFV F+ E N+A+ +G +P+
Sbjct: 132 LQETFRVHYS---SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPM 188
Query: 365 YVALAQRKEDRQAQLQLQYAQKI---AGLAGPSTAII 398
++ A K++ +Q QY K+ + +A P A +
Sbjct: 189 RISAATPKKN--VGVQQQYVTKVTVPSAVAAPVQAYV 223
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 134/274 (48%), Gaps = 30/274 (10%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDL + + + FA+ S +V R+ TG+S YG++ F+S A + ++
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 74 NHSML--NGKVIRVLWSRRDP-DVRKSCIG---NVFVKNLAESVDSSGLEEIFKK-YGNI 126
N + + + R+ W++ + R G +FV +LA V L + FK YG++
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 127 LSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPG 185
+KVV+ G+SKGYGFV+F E A+ ++NG + + + +G K+ LP
Sbjct: 182 KGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKN--ALPM 239
Query: 186 PDASY---------------TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMS 230
A Y T +++ LD ++T+ LK F FG+++ + I
Sbjct: 240 QPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPP-----G 294
Query: 231 KGFGFVNYENPDDAKRALEAMNGSQLGSKILYVA 264
K GFV Y N A+ AL +NG+QLG + + ++
Sbjct: 295 KRCGFVQYANKASAEHALSVLNGTQLGGQSIRLS 328
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 142/298 (47%), Gaps = 27/298 (9%)
Query: 97 SCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANA 155
S + ++++ +L + +D + + +F + G S+KV+ G+S+GYGF++F S A
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 156 AIEKLNGST---------INDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEAL 206
++ NG+ +N Q G ++E GPD + +++ +L ++T+ +
Sbjct: 117 VLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTE----GPDHT---IFVGDLAPEVTDYM 169
Query: 207 LKEKFSS-FGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVA 264
L + F + +G + + D G SKG+GFV + + ++ RA+ MNG ++ + +
Sbjct: 170 LSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIG 229
Query: 265 -RAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSA 323
A K A + +Q + + I+V +D NV+D+EL+ F G +
Sbjct: 230 PAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHV 289
Query: 324 KVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQ--RKEDRQAQL 379
K+ ++ GFV ++ A A++ +G G+ + ++ + K+ QAQ
Sbjct: 290 KIPPGKR-----CGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQW 342
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 139/292 (47%), Gaps = 39/292 (13%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDL + + L F++ L SV+V R+ TG+ YG++ F+S A + ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 74 NHSMLNGK--VIRVLWSR--RDPDVRKSCIGNVFVKNLAESVDSSGLEEIFK-KYGNILS 128
N + + G R+ W+ V ++FV +LA V L+E F+ Y ++
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 145
Query: 129 SKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNG----------------STINDKQIY 171
+KVV G+SKGYGFV+F E N A+ ++NG + +Q Y
Sbjct: 146 AKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQY 205
Query: 172 VGRFVK------------KSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVS 219
V + V ++ P D + T + + NLD ++TE LK+ FS G+++
Sbjct: 206 VTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIY 265
Query: 220 LAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAE 271
+ I +KG+G+V ++ A+ A++ M G +G + + ++ ++ +
Sbjct: 266 VKIPA-----TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQ 312
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 26/216 (12%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEA 250
L++ +L + E L FS G++VS+ + +++ G +G+GF+ + + A+R L+
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 251 MNGSQL-GSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSD-- 307
NG+Q+ G+++ + R+ F +K + +I+V ++ +V+D
Sbjct: 85 YNGTQMPGTELTF-----------RLNWASFGSGQK--VDAGPDHSIFVGDLAPDVTDYL 131
Query: 308 --EELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPL 364
E R H+S S+ AKV+ D G SKG+GFV F+ E N+A+ +G +P+
Sbjct: 132 LQETFRVHYS---SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPM 188
Query: 365 YVALAQRKEDRQAQLQLQYAQK-IAGLAGPSTAIIP 399
++ A K++ +Q QY K + + PS P
Sbjct: 189 RISAATPKKN--VGVQQQYVTKAVYPVTVPSAVAAP 222
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 134/279 (48%), Gaps = 24/279 (8%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDL P + + L + F + +V R+ G S YG++ F++ A + ++
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 74 NHSML--NGKVIRVLWSRRDPDVRKSCIG---NVFVKNLAESVDSSGLEEIFKK-YGNIL 127
N + + + + R+ W++ R+ G VFV +LA V L E FK Y ++
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVK 201
Query: 128 SSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFV-KKSERILPG 185
+KVV G+SKGYGFV+F E A+ ++NG + + + G KK + P
Sbjct: 202 GAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPA 261
Query: 186 -----------PDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFG 234
D + T +++ +D +TE LK F FG++V + I K G
Sbjct: 262 SYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPA-----GKRCG 316
Query: 235 FVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERE 273
FV Y N A++AL +NG+QLG + + ++ + + ++
Sbjct: 317 FVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQ 355
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 184 PGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPD 242
PG +L++ +L + E L F G+ + + ++ +NG S+G+GF+ + N
Sbjct: 73 PGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHA 132
Query: 243 DAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNID 302
A+R L+ NG+ + S ++A R E+R+ + ++ ++V ++
Sbjct: 133 TAERNLQTYNGAPMPSS--------EQAFRLNWAQLGAGERRQAEGPEH---TVFVGDLA 181
Query: 303 DNVSDEELRDHFSAC-GSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
+V+D L + F A S+ AKV+ D G SKG+GFV F+ E +A+ +G
Sbjct: 182 PDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCS 241
Query: 361 GKPLYVALAQRKEDRQAQ-LQLQYAQKIAGLAGPSTAII 398
+P+ A K+ Q Q Q +G + P+ I
Sbjct: 242 SRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTI 280
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 130/280 (46%), Gaps = 31/280 (11%)
Query: 92 PDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEE 151
P S +V+V N+ V L+EIF G + SSK++ D YGFV +
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKD---KSSYGFVHYFDRR 107
Query: 152 SANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKF 211
SA AI LNG + + I V +R +S+ N+++ +L ++T+A L + F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQR---EDTSSHFNIFVGDLSPEVTDATLYQSF 164
Query: 212 SSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKA 270
S F + D+ G S+GFGFV++ N DA+ A+ MNG L S+ + A K A
Sbjct: 165 SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGA 224
Query: 271 ER--ERI---------LNHQFEEKRKEQILKYKGSN------IYVKNIDDNVSDEELRDH 313
+++ L E KE + + N +YV N+ V+ +L +
Sbjct: 225 TSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRY 284
Query: 314 FSACGS--ITSAKVMKDEKGISKGFGFVCFSTPEEANKAV 351
F A G+ I +V +D KGFGFV ++T EA A+
Sbjct: 285 FHALGAGVIEEVRVQRD-----KGFGFVRYNTHPEAALAI 319
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 122/276 (44%), Gaps = 50/276 (18%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG++H +++ L + F + S ++ R + YG+V++ + A AI
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS----SYGFVHYFDRRSAALAILSL 116
Query: 74 NHSMLNGKVIRVLWS-----RRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILS 128
N L G+ I+V W+ R D S N+FV +L+ V + L + F + +
Sbjct: 117 NGRHLFGQPIKVNWAYATGQRED----TSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSD 172
Query: 129 SKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKS-------- 179
++V+ G+S+G+GFV F +++ A AI ++NG ++ +QI K +
Sbjct: 173 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLS 232
Query: 180 ---------------------ERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-- 216
P ++ +T +Y+ NL ++T+ L F + G
Sbjct: 233 SDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGV 292
Query: 217 IVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMN 252
I + + +D KGFGFV Y +A A++ N
Sbjct: 293 IEEVRVQRD-----KGFGFVRYNTHPEAALAIQMGN 323
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 92/181 (50%), Gaps = 22/181 (12%)
Query: 179 SERILPGPDASYT-NLYMKNLDLDITEALLKEKFSSFGKI-VSLAISKDENGMSKGFGFV 236
S + PG D S ++Y+ N+ +TE LL+E F+S G + S I KD++ +GFV
Sbjct: 46 SGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFV 101
Query: 237 NYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNI 296
+Y + A A+ ++NG L + + V A +RE +H NI
Sbjct: 102 HYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSH---------------FNI 146
Query: 297 YVKNIDDNVSDEELRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFH 355
+V ++ V+D L FS S + A+VM D+K G S+GFGFV F ++A A+N +
Sbjct: 147 FVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMN 206
Query: 356 G 356
G
Sbjct: 207 G 207
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 137/293 (46%), Gaps = 37/293 (12%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDL + + L+ FA + S +V R+ TG+ YG++ F S A + ++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 74 NHSMLNG---KVIRVLWS------RRD--PDVRKSCIGNVFVKNLAESVDSSGLEEIFK- 121
N++ + ++ R+ W+ +RD PD +FV +LA V L E F+
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDY------TIFVGDLAADVTDYILLETFRA 177
Query: 122 KYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKK-- 178
Y ++ +KVV+ G++KGYGFV+F E A+ ++NG + + + +G K
Sbjct: 178 SYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKG 237
Query: 179 -----------SERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN 227
+ + D + T +++ LD +T+ LK FS +G+IV + I
Sbjct: 238 VTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPA--- 294
Query: 228 GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQF 280
K GFV + A+ AL +NG QLG + ++ + + ++ QF
Sbjct: 295 --GKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPSQF 345
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 5/171 (2%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG L +S+ L + F + + +V V +D T YG++ + S +DA AI+V
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIG-NVFVKNLAESVDSSGLEEIFKKYGNILSSKVV 132
N L+GK IRV ++ D + +G N+F+ NL VD L + F +G I S+ +
Sbjct: 87 NMIKLHGKPIRV--NKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKI 144
Query: 133 M--ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSER 181
M D G S+G+GF+ ++S E+++AAIE + G ++++QI V KK +
Sbjct: 145 MRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTK 195
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 101/186 (54%), Gaps = 20/186 (10%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
+Y+ LD ++E LL E F G +V++ + KD + + +GF+ Y + +DA A++ +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
N +L K + V +A ++K+ + G+N+++ N+D +V ++ L
Sbjct: 87 NMIKLHGKPIRVNKAS-------------QDKKSLDV----GANLFIGNLDPDVDEKLLY 129
Query: 312 DHFSACGSITS-AKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
D FSA G I S K+M+D + G S+GFGF+ + + E ++ A+ + G + + V+ A
Sbjct: 130 DTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Query: 370 QRKEDR 375
+K+ +
Sbjct: 190 YKKDTK 195
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 98/173 (56%), Gaps = 12/173 (6%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKS---KGYGFVQFESEESANAAIE 158
V+V L + L E+F + G +++ V + D + + YGF+++ SEE A+ AI+
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVN--VYVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84
Query: 159 KLNGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIV 218
LN ++ K I V + + + + G NL++ NLD D+ E LL + FS+FG I
Sbjct: 85 VLNMIKLHGKPIRVNKASQDKKSLDVG-----ANLFIGNLDPDVDEKLLYDTFSAFGVIA 139
Query: 219 S-LAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
S I +D + G S+GFGF++Y++ + + A+E+M G L ++ + V+ A KK
Sbjct: 140 SNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK 192
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 126/278 (45%), Gaps = 30/278 (10%)
Query: 92 PDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEE 151
P S +V+V N+ V L+E+F G + S K++ + YGFV +
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKE---KSSYGFVHYFDRR 102
Query: 152 SANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKF 211
SA AI LNG + + I V +R +S+ N+++ +L ++T+A+L F
Sbjct: 103 SAGLAILSLNGRHLFGQPIKVNWAYASGQR---EDTSSHFNIFVGDLSPEVTDAMLFTCF 159
Query: 212 SSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKA 270
S + + D+ G S+GFGFV++ N DA+ A++ + G LGS+ + A K A
Sbjct: 160 SVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGA 219
Query: 271 ERERILNHQFEEKRKEQILKYKG---------------SNIYVKNIDDNVSDEELRDHFS 315
+ K ++ G + +YV N+ VS +L HF
Sbjct: 220 TSGED-KQSSDSKSVVELTSGDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFH 278
Query: 316 ACGS--ITSAKVMKDEKGISKGFGFVCFSTPEEANKAV 351
+ G+ I +V +D KGFGFV +ST EA A+
Sbjct: 279 SLGAGVIEEVRVQRD-----KGFGFVRYSTHVEAALAI 311
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 130/291 (44%), Gaps = 53/291 (18%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG++H +++ L + FA + S ++ R + YG+V++ + A AI
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILSL 111
Query: 74 NHSMLNGKVIRVLWS-----RRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILS 128
N L G+ I+V W+ R D S N+FV +L+ V + L F Y
Sbjct: 112 NGRHLFGQPIKVNWAYASGQRED----TSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSD 167
Query: 129 SKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVK---------- 177
++V+ G+S+G+GFV F +++ A AI+++ G + +QI K
Sbjct: 168 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQS 227
Query: 178 -KSERIL---------------PGPDASYTNLYMKNLDLDITEALLKEKFSSFGK--IVS 219
S+ ++ P +A YT +Y+ NL ++++ L F S G I
Sbjct: 228 SDSKSVVELTSGDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEE 287
Query: 220 LAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKA 270
+ + +D KGFGFV Y +A A+ Q+G+ Y++ Q K
Sbjct: 288 VRVQRD-----KGFGFVRYSTHVEAALAI------QMGNTHSYLSGRQMKC 327
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 24/205 (11%)
Query: 179 SERILPGPDASYT-NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVN 237
S + PG D S ++Y+ N+ + +TE LL+E F+ G + S + + E +GFV+
Sbjct: 41 SGNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEK---SSYGFVH 97
Query: 238 YENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIY 297
Y + A A+ ++NG L + + V A +RE +H NI+
Sbjct: 98 YFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSH---------------FNIF 142
Query: 298 VKNIDDNVSDEELRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFHG 356
V ++ V+D L FS + + A+VM D+K G S+GFGFV F ++A A++ G
Sbjct: 143 VGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITG 202
Query: 357 FMFHGKPLYVALAQR----KEDRQA 377
+ + A + ED+Q+
Sbjct: 203 KWLGSRQIRCNWATKGATSGEDKQS 227
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 6/176 (3%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+FV NL VDS L +F++ G + S+V+ D +S+G+GFV + E A A+EK
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 161 NGSTINDKQIYVGRFVKKSERILPGP---DASYTNLYMKNLDLDITEALLKEKFSSFGKI 217
N +N +++ V R + R P DA++ +Y+ NL D+ L+ FS GK+
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAF-RIYVGNLPWDVDSGRLERLFSEHGKV 233
Query: 218 VSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAER 272
V + D E G S+GFGFV N ++ A+ A++G L + + V A+++ R
Sbjct: 234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 20/189 (10%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKI-VSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
L++ NL D+ L F G + +S I + S+GFGFV ++A++A+E
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 252 NGSQLGSKILYVARAQKKAERE----RILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSD 307
N ++ + L V RA + R R+ + F IYV N+ +V
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFR--------------IYVGNLPWDVDS 220
Query: 308 EELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
L FS G + A+V+ D E G S+GFGFV S E N A+ G G+ + V
Sbjct: 221 GRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280
Query: 367 ALAQRKEDR 375
+A+ + R
Sbjct: 281 NVAEERTRR 289
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 9/176 (5%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VG+L D+ L F + + V + T +S +G+V + ++A +A+E
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 74 NHSMLNGKVIRVLWS-------RRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNI 126
N +NG+ + V + R P V + ++V NL VDS LE +F ++G +
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAF-RIYVGNLPWDVDSGRLERLFSEHGKV 233
Query: 127 LSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSER 181
+ ++VV + G+S+G+GFVQ +E N AI L+G + + I V +++ R
Sbjct: 234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 125/280 (44%), Gaps = 31/280 (11%)
Query: 92 PDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEE 151
P S +V+V N+ V L+E+F G + S K++ + YGFV +
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKE---KSSYGFVHYFDRR 102
Query: 152 SANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKF 211
SA AI LNG + + I V +R +S+ N+++ +L ++T+A+L F
Sbjct: 103 SAGLAILSLNGRHLFGQPIKVNWAYASGQR---EDTSSHFNIFVGDLSPEVTDAMLFTCF 159
Query: 212 SSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKA 270
S + + D+ G S+GFGFV++ N DA+ A++ + G LGS+ + A K A
Sbjct: 160 SVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGA 219
Query: 271 ERERI-----------LNHQFEEKRKEQILKYKGSN------IYVKNIDDNVSDEELRDH 313
L E K+ N +YV N+ VS +L H
Sbjct: 220 TSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRH 279
Query: 314 FSACGS--ITSAKVMKDEKGISKGFGFVCFSTPEEANKAV 351
F + G+ I +V +D KGFGFV +ST EA A+
Sbjct: 280 FHSLGAGVIEEVRVQRD-----KGFGFVRYSTHVEAALAI 314
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 130/294 (44%), Gaps = 56/294 (19%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG++H +++ L + FA + S ++ R + YG+V++ + A AI
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILSL 111
Query: 74 NHSMLNGKVIRVLWS-----RRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILS 128
N L G+ I+V W+ R D S N+FV +L+ V + L F Y
Sbjct: 112 NGRHLFGQPIKVNWAYASGQRED----TSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSD 167
Query: 129 SKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVK---------- 177
++V+ G+S+G+GFV F +++ A AI+++ G + +QI K
Sbjct: 168 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQS 227
Query: 178 -KSERIL------------------PGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-- 216
S+ ++ P +A YT +Y+ NL ++++ L F S G
Sbjct: 228 SDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGV 287
Query: 217 IVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKA 270
I + + +D KGFGFV Y +A A+ Q+G+ Y++ Q K
Sbjct: 288 IEEVRVQRD-----KGFGFVRYSTHVEAALAI------QMGNTHSYLSGRQMKC 330
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 24/205 (11%)
Query: 179 SERILPGPDASYT-NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVN 237
S + PG D S ++Y+ N+ + +TE LL+E F+ G + S + + E +GFV+
Sbjct: 41 SGNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEK---SSYGFVH 97
Query: 238 YENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIY 297
Y + A A+ ++NG L + + V A +RE +H NI+
Sbjct: 98 YFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSH---------------FNIF 142
Query: 298 VKNIDDNVSDEELRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFHG 356
V ++ V+D L FS + + A+VM D+K G S+GFGFV F ++A A++ G
Sbjct: 143 VGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITG 202
Query: 357 FMFHGKPLYVALAQR----KEDRQA 377
+ + A + ED+Q+
Sbjct: 203 KWLGSRQIRCNWATKGATSGEDKQS 227
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 128/286 (44%), Gaps = 45/286 (15%)
Query: 91 DPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESE 150
DP +S V+ N+ V L+EIF G I S K++ D YGFV +
Sbjct: 58 DPTTCRS----VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKD---KSSYGFVHYFDR 110
Query: 151 ESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEK 210
A+ AI LNG I + + V +R +S+ N+++ +L ++T+A L +
Sbjct: 111 RCASMAIMTLNGRHIFGQPMKVNWAYATGQR---EDTSSHFNIFVGDLSPEVTDAALFDS 167
Query: 211 FSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
FS+F + D+ G S+GFGFV++ N DA+ A+ MNG + S+ + A K
Sbjct: 168 FSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKG 227
Query: 270 A----------------------ERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSD 307
A E R L+++ + Q + +YV N+ V+
Sbjct: 228 ATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQF-----TTVYVGNLSPEVTQ 282
Query: 308 EELRDHFSACGS--ITSAKVMKDEKGISKGFGFVCFSTPEEANKAV 351
+L F G+ I +V +D KGFGFV ++T +EA A+
Sbjct: 283 LDLHRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAI 323
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 124/277 (44%), Gaps = 52/277 (18%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+Y G++H +++ L + FA + S ++ R + YG+V++ + A AI
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIMTL 120
Query: 74 NHSMLNGKVIRVLWS-----RRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILS 128
N + G+ ++V W+ R D S N+FV +L+ V + L + F + N S
Sbjct: 121 NGRHIFGQPMKVNWAYATGQRED----TSSHFNIFVGDLSPEVTDAALFDSFSAF-NSCS 175
Query: 129 SKVVMADD--GKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSE------ 180
VM D G+S+G+GFV F +++ A AI ++NG ++ +QI K +
Sbjct: 176 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKH 235
Query: 181 ------------------RILPGPDA-----SYTNLYMKNLDLDITEALLKEKFSSFGK- 216
R L DA +T +Y+ NL ++T+ L F + G
Sbjct: 236 SSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAG 295
Query: 217 -IVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMN 252
I + + +D KGFGFV Y D+A A++ N
Sbjct: 296 VIEEVRVQRD-----KGFGFVRYNTHDEAALAIQMGN 327
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 22/181 (12%)
Query: 179 SERILPGPDASYT-NLYMKNLDLDITEALLKEKFSSFGKIVSLA-ISKDENGMSKGFGFV 236
S + PG D + ++Y N+ +TE LL+E F+S G I S I KD++ +GFV
Sbjct: 50 SGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFV 105
Query: 237 NYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNI 296
+Y + A A+ +NG + + + V A +RE +H NI
Sbjct: 106 HYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSH---------------FNI 150
Query: 297 YVKNIDDNVSDEELRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFH 355
+V ++ V+D L D FSA S + A+VM D+K G S+GFGFV F ++A A+N +
Sbjct: 151 FVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMN 210
Query: 356 G 356
G
Sbjct: 211 G 211
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 49/290 (16%)
Query: 91 DPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESE 150
DP +S V+ N+ V L+EIF G I S K++ D YGFV +
Sbjct: 58 DPTTCRS----VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKD---KSSYGFVHYFDR 110
Query: 151 ESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEK 210
A+ AI LNG I + + V +R +S+ N+++ +L ++T+A L +
Sbjct: 111 RCASMAIMTLNGRHIFGQPMKVNWAYATGQR---EDTSSHFNIFVGDLSPEVTDAALFDS 167
Query: 211 FSSFGKIVSL-----AISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVAR 265
FS+F S + + G S+GFGFV++ N DA+ A+ MNG + S+ +
Sbjct: 168 FSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNW 227
Query: 266 AQKKA----------------------ERERILNHQFEEKRKEQILKYKGSNIYVKNIDD 303
A K A E R L+++ + Q + +YV N+
Sbjct: 228 ATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQF-----TTVYVGNLSP 282
Query: 304 NVSDEELRDHFSACGS--ITSAKVMKDEKGISKGFGFVCFSTPEEANKAV 351
V+ +L F G+ I +V +D KGFGFV ++T +EA A+
Sbjct: 283 EVTQLDLHRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAI 327
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 124/280 (44%), Gaps = 54/280 (19%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+Y G++H +++ L + FA + S ++ R + YG+V++ + A AI
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIMTL 120
Query: 74 NHSMLNGKVIRVLWS-----RRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILS 128
N + G+ ++V W+ R D S N+FV +L+ V + L + F + + S
Sbjct: 121 NGRHIFGQPMKVNWAYATGQRED----TSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSS 176
Query: 129 ---SKVVMADD--GKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSE--- 180
VM D G+S+G+GFV F +++ A AI ++NG ++ +QI K +
Sbjct: 177 YYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGE 236
Query: 181 ---------------------RILPGPDA-----SYTNLYMKNLDLDITEALLKEKFSSF 214
R L DA +T +Y+ NL ++T+ L F +
Sbjct: 237 DKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTL 296
Query: 215 GK--IVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMN 252
G I + + +D KGFGFV Y D+A A++ N
Sbjct: 297 GAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAIQMGN 331
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 93/185 (50%), Gaps = 26/185 (14%)
Query: 179 SERILPGPDASYT-NLYMKNLDLDITEALLKEKFSSFGKIVSLA-ISKDENGMSKGFGFV 236
S + PG D + ++Y N+ +TE LL+E F+S G I S I KD++ +GFV
Sbjct: 50 SGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFV 105
Query: 237 NYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNI 296
+Y + A A+ +NG + + + V A +RE +H NI
Sbjct: 106 HYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSH---------------FNI 150
Query: 297 YVKNIDDNVSDEELRDHFSACGSITS----AKVMKDEK-GISKGFGFVCFSTPEEANKAV 351
+V ++ V+D L D FSA S +S A+VM D+K G S+GFGFV F ++A A+
Sbjct: 151 FVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 210
Query: 352 NTFHG 356
N +G
Sbjct: 211 NEMNG 215
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 182 ILPGPDASYTNLYMKNLDLDITEALLKEKFSSFG--KIVSLAISKDENGMSKGFGFVNYE 239
+L P A T LY NL ++ A L + F ++V + ++D G S+GF FV
Sbjct: 76 VLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRD-TGQSRGFAFVTMS 134
Query: 240 NPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVK 299
N +D ++ ++G++ + L V A K + L + E K ++V
Sbjct: 135 NVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHK------------LFVG 182
Query: 300 NIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFM 358
N+ V+ E L F CG + A+V+ D + G S+G+GFVC+S+ E A+ + GF
Sbjct: 183 NLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFE 242
Query: 359 FHGKPLYVALAQRKE 373
G+ + V LAQ K+
Sbjct: 243 LEGRAIRVNLAQGKK 257
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LY G+L ++ A L +F N V V + TG+S + +V + +D I+
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCI-----GNVFVKNLAESVDSSGLEEIFKKYGNILS 128
+ + G+ ++V ++ + P K + +FV NL+ +V S L F++ G+++
Sbjct: 147 DGTEYLGRALKVNFADK-PKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVG 205
Query: 129 SKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
++VV D G+S+GYGFV + S+ A+E L+G + + I V
Sbjct: 206 ARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 4/175 (2%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+FV NLA V+S L +F++ G + ++V+ + +S+G+GFV S + A A+EK
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDA--SYTNLYMKNLDLDITEALLKEKFSSFGKIV 218
N +N + + V + + R P +Y+ NL D+ L++ FS GK+V
Sbjct: 212 NRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV 271
Query: 219 SLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAER 272
+ D E G S+GFGFV + D+ A+ A++G L + + V A+++ R
Sbjct: 272 EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 14/201 (6%)
Query: 179 SERI-LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKI-VSLAISKDENGMSKGFGFV 236
SER P P + L++ NL D+ L F G + ++ I E S+GFGFV
Sbjct: 138 SERAEFPEP-SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFV 196
Query: 237 NYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNI 296
+ D+A+ A+E N L ++L V +A + R +E + +
Sbjct: 197 TMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFR----------V 246
Query: 297 YVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFH 355
YV N+ +V + L FS G + A+V+ D E G S+GFGFV S +E N+A++
Sbjct: 247 YVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALD 306
Query: 356 GFMFHGKPLYVALAQRKEDRQ 376
G G+ + V +A+ + R+
Sbjct: 307 GQNLEGRAIRVNVAEERPPRR 327
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 9/167 (5%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VG+L D++ L F + + V + T +S +G+V S +A A+E
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 74 NHSMLNGKVIRV-----LWSR--RDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNI 126
N LNG+++ V SR R P V + V+V NL VD+ LE++F ++G +
Sbjct: 212 NRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF-RVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 127 LSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
+ ++VV + G+S+G+GFV + N AI L+G + + I V
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 118/251 (47%), Gaps = 37/251 (14%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDL + + L+ FA + S +V R+ TG+ YG++ F S A + ++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 74 NHSMLNG---KVIRVLWS------RRD--PDVRKSCIGNVFVKNLAESVDSSGLEEIFK- 121
N++ + ++ R+ W+ +RD PD +FV +LA V L E F+
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDY------TIFVGDLAADVTDYILLETFRA 177
Query: 122 KYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKK-- 178
Y ++ +KVV+ G++KGYGFV+F E A+ ++NG + + + +G K
Sbjct: 178 SYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKG 237
Query: 179 -----------SERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN 227
+ + D + T +++ LD +T+ LK FS +G+IV + I
Sbjct: 238 VTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPA--- 294
Query: 228 GMSKGFGFVNY 238
K GFV +
Sbjct: 295 --GKRCGFVQF 303
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 117/250 (46%), Gaps = 12/250 (4%)
Query: 99 IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAI 157
I +++ +L +D + L F G ++S+KV+ G+ +GYGF++F S +A +
Sbjct: 61 IRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120
Query: 158 EKLNGSTIND--KQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKF-SSF 214
+ N + I Q++ + S YT +++ +L D+T+ +L E F +S+
Sbjct: 121 QTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYT-IFVGDLAADVTDYILLETFRASY 179
Query: 215 GKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVA-RAQKKAER 272
+ + D G +KG+GFV + + + RA+ MNG ++ + + A KK
Sbjct: 180 PSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVT 239
Query: 273 ERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGI 332
+ ++Q + ++V +D +V+D+ L++ FS G I K+
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPA----- 294
Query: 333 SKGFGFVCFS 342
K GFV FS
Sbjct: 295 GKRCGFVQFS 304
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 7/185 (3%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
LY+ NL IT + L + F G +V + I D+ S+GFGFV + ++AK A++
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGS--NIYVKNIDDNVSDEE 309
N SQ+G + + V + E N K ++ Y S +Y N+ N++ +
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGE---NEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQG 234
Query: 310 LRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVAL 368
L+D F + AKV+ + G S+GFGF+ F + E A+ T +G G+ L + L
Sbjct: 235 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 294
Query: 369 AQRKE 373
A +E
Sbjct: 295 ASERE 299
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVG+L I+ ++L F E + V++ D T RS +G+V S ++A +A+++
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 74 NHSMLNGKVIRV------------LWSRRDPDVRKSCIGN---VFVKNLAESVDSSGLEE 118
N S + G+ ++V + + D +S + + V+ NL ++ S GL++
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 119 IFKKYGNILSSKVVMA-DDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVK 177
F +L +KV+ + G+S+G+GF+ FES E+ +A+ +NG + + + R
Sbjct: 238 AFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL---RLNL 294
Query: 178 KSERILP 184
SER P
Sbjct: 295 ASEREKP 301
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 16/188 (8%)
Query: 100 GNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIE 158
G ++V NL ++ SS L +IF + G ++ ++V +S+G+GFV S E A A++
Sbjct: 116 GRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQ 175
Query: 159 KLNGSTINDKQIYV-------GRFVKKSERILPGPDASYTN----LYMKNLDLDITEALL 207
N S I + + V G + + + SY + +Y NL ++T L
Sbjct: 176 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 235
Query: 208 KEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARA 266
K+ F ++ + + N G S+GFGF+++E+ ++ + AL MNG ++ + L R
Sbjct: 236 KDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL---RL 292
Query: 267 QKKAERER 274
+ERE+
Sbjct: 293 NLASEREK 300
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 16/173 (9%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKV-VMAD--DGKSKGYGFVQFESEESANAAIE 158
V++ N+ +V + L ++ +++G + KV VM D G+S+ +GF +S E ANA +E
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAV--EKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 159 KLNGSTINDKQIYVGRFVK-----KSERILPGPDASYTN----LYMKNLDLDITEALLKE 209
KLNG+T+ ++I V K +L D+++ + +Y+ NL +T+ +L+
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 210 KFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMNGSQL-GSKI 260
FS GK+VS +S+ S GFGFV + + +D + A+ A+N S L G KI
Sbjct: 196 LFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKI 248
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 14/175 (8%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+Y+G++ +++ QL E + V+V D +GRS +G+ S +DA +E
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 74 NHSMLNGKVIRVLWSRR----DPDV-----RKSCIGN----VFVKNLAESVDSSGLEEIF 120
N + + G+ I+V + + PD+ S + V+V NLA++V LE +F
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLF 197
Query: 121 KKYGNILSSKVV-MADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGR 174
+ G ++S+KV + KS G+GFV F SEE AAI LN S + ++I V +
Sbjct: 198 SEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNK 252
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 7/177 (3%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
+Y+ N+ +T L + G + + + D+ +G S+ FGF ++ +DA +E +
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
NG+ + + + V +K L+ E YK +YV N+ V+ E L
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYK---VYVGNLAKTVTKEMLE 194
Query: 312 DHFSACGSITSAKVMKDEKGISK--GFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
+ FS G + SAKV + G SK GFGFV FS+ E+ A+ + + G+ + V
Sbjct: 195 NLFSEKGKVVSAKVSR-VPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 16/173 (9%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKV-VMAD--DGKSKGYGFVQFESEESANAAIE 158
V++ N+ +V + L ++ +++G + KV VM D G+S+ +GF +S E ANA +E
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAV--EKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 159 KLNGSTINDKQIYVGRFVK-----KSERILPGPDASYTN----LYMKNLDLDITEALLKE 209
KLNG+T+ ++I V K +L D+++ + +Y+ NL +T+ +L+
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 210 KFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMNGSQL-GSKI 260
FS GK+VS +S+ S GFGFV + + +D + A+ A+N S L G KI
Sbjct: 196 LFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKI 248
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 14/175 (8%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+Y+G++ +++ QL E + V+V D +GRS +G+ S +DA +E
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 74 NHSMLNGKVIRVLWSRR----DPDV-----RKSCIGN----VFVKNLAESVDSSGLEEIF 120
N + + G+ I+V + + PD+ S + V+V NLA++V LE +F
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLF 197
Query: 121 KKYGNILSSKVV-MADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGR 174
+ G ++S+KV + KS G+GFV F SEE AAI LN S + ++I V +
Sbjct: 198 SEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNK 252
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 7/177 (3%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
+Y+ N+ +T L + G + + + D+ +G S+ FGF ++ +DA +E +
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
NG+ + + + V +K L+ E YK +YV N+ V+ E L
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYK---VYVGNLAKTVTKEMLE 194
Query: 312 DHFSACGSITSAKVMKDEKGISK--GFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
+ FS G + SAKV + G SK GFGFV FS+ E+ A+ + + G+ + V
Sbjct: 195 NLFSEKGKVVSAKVSR-VPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 139/332 (41%), Gaps = 35/332 (10%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
VF+ L V L ++ ++ G I +++ D G SKGY FV F++++ A AIE+L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIV-S 219
+ K I K+ L++ N+ + TE ++ G V +
Sbjct: 178 HSKEFKGKTIRCSLSETKN------------RLFIGNIPKNWTEDEFRKVIEDVGPGVEN 225
Query: 220 LAISKDENGMSK--GFGFVNYENPDDAKRALEAMNGS--QLGSKILYVARAQKKAERERI 275
+ + KD ++ GF FV Y N A + + M S +L V A K+ E
Sbjct: 226 IELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEH- 284
Query: 276 LNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG 335
+ +YVKNI +N S E+L++ F G +T V KG +
Sbjct: 285 -----------SAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKRD 332
Query: 336 FGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGPST 395
FGFV ++ A KAV + +G+PL V LA+ + +R+ Y+ A P
Sbjct: 333 FGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPS-SYSYGAAPTPAPFV 391
Query: 396 AIIPGGYPPFYYTATGVVPHVPHRAGLMYQPL 427
GG+ Y A G + AG QP+
Sbjct: 392 HPTFGGFAAAPYGAMGAGLGI---AGSFSQPM 420
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 8/261 (3%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+++G L D+ + L D E + VR+ +D +G S Y +V F + A +AIE
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
+ GK IR S + IGN+ KN E +E++ NI K
Sbjct: 178 HSKEFKGKTIRCSLSETK---NRLFIGNI-PKNWTEDEFRKVIEDVGPGVENIELIKDP- 232
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGST--INDKQIYVGRFVKKSERILPGPDASYT 191
+ +++G+ FV + + A+ + +K+ S + V KS A
Sbjct: 233 TNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVK 292
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
LY+KN+ + + LKE F G++ + ++ G + FGFV+Y A +A++
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKRDFGFVHYAERSSALKAVKDT 351
Query: 252 NGSQLGSKILYVARAQKKAER 272
++ + L V A+ +AER
Sbjct: 352 ERYEVNGQPLEVVLAKPQAER 372
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 289 LKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEA 347
L GS +++ + +V +E+LRD G I ++MKD + G SKG+ FV F T + A
Sbjct: 111 LPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVA 170
Query: 348 NKAVNTFHGFMFHGKPLYVALAQRK 372
KA+ H F GK + +L++ K
Sbjct: 171 QKAIEELHSKEFKGKTIRCSLSETK 195
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 139/332 (41%), Gaps = 35/332 (10%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
VF+ L V L ++ ++ G I +++ D G SKGY FV F++++ A AIE+L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIV-S 219
+ K I K+ L++ N+ + TE ++ G V +
Sbjct: 178 HSKEFKGKTIRCSLSETKN------------RLFIGNIPKNWTEDEFRKVIEDVGPGVEN 225
Query: 220 LAISKDENGMSK--GFGFVNYENPDDAKRALEAMNGS--QLGSKILYVARAQKKAERERI 275
+ + KD ++ GF FV Y N A + + M S +L V A K+ E
Sbjct: 226 IELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEH- 284
Query: 276 LNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG 335
+ +YVKNI +N S E+L++ F G +T V KG +
Sbjct: 285 -----------SAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKRD 332
Query: 336 FGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGPST 395
FGFV ++ A KAV + +G+PL V LA+ + +R+ Y+ A P
Sbjct: 333 FGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPS-SYSYGAAPTPAPFV 391
Query: 396 AIIPGGYPPFYYTATGVVPHVPHRAGLMYQPL 427
GG+ Y A G + AG QP+
Sbjct: 392 HPTFGGFAAAPYGAMGAGLGI---AGSFSQPM 420
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 8/261 (3%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+++G L D+ + L D E + VR+ +D +G S Y +V F + A +AIE
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
+ GK IR S + IGN+ KN E +E++ NI K
Sbjct: 178 HSKEFKGKTIRCSLSETK---NRLFIGNI-PKNWTEDEFRKVIEDVGPGVENIELIKDP- 232
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGST--INDKQIYVGRFVKKSERILPGPDASYT 191
+ +++G+ FV + + A+ + +K+ S + V KS A
Sbjct: 233 TNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVK 292
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
LY+KN+ + + LKE F G++ + ++ G + FGFV+Y A +A++
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKRDFGFVHYAERSSALKAVKDT 351
Query: 252 NGSQLGSKILYVARAQKKAER 272
++ + L V A+ +AER
Sbjct: 352 ERYEVNGQPLEVVLAKPQAER 372
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 289 LKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEA 347
L GS +++ + +V +E+LRD G I ++MKD + G SKG+ FV F T + A
Sbjct: 111 LPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVA 170
Query: 348 NKAVNTFHGFMFHGKPLYVALAQRK 372
KA+ H F GK + +L++ K
Sbjct: 171 QKAIEELHSKEFKGKTIRCSLSETK 195
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
LY+ N+ A L + F FG ++S+ +S++ + G S+G G+V + + AK A+ ++
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN-IYVKNIDDNVSDEEL 310
+G+++G + + V + R N + ++IL Y+ + +YV N+ + L
Sbjct: 170 DGTEVGGREMRVRYSVDMNPGTR-RNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 228
Query: 311 RDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
R+HFS G+I S +V+ D K G ++ F F+ F++ EE + A+ +F+G + G+ + V
Sbjct: 229 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRIIV 284
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 18/184 (9%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYV ++ AQL D F F + SV V R+ TG S GYV S A AI
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 74 NHSMLNGKVIRVLWS-------RRDPDVRKSCIG---------NVFVKNLAESVDSSGLE 117
+ + + G+ +RV +S RR+P+V S V+V NL GL
Sbjct: 170 DGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLR 229
Query: 118 EIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFV 176
F K+G I+S++V+ G+++ + F+ F S E +AA+ NG+ ++I V +
Sbjct: 230 NHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNGTQYEGRRIIVREGI 288
Query: 177 KKSE 180
+KSE
Sbjct: 289 EKSE 292
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 94 VRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEES 152
V+K ++V N+ S D + L ++F+ +G ++S +V G+S+G G+V S S
Sbjct: 102 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINS 161
Query: 153 ANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDA------------SYTNLYMKNLDL 200
A AI L+G+ + +++ V V + P+ S +Y+ NL
Sbjct: 162 AKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPW 221
Query: 201 DITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSK 259
L+ FS FG IVS + D + G ++ F F+++ + ++ AL + NG+Q +
Sbjct: 222 FTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGR 280
Query: 260 ILYVARAQKKAE 271
+ V +K+E
Sbjct: 281 RIIVREGIEKSE 292
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 96/176 (54%), Gaps = 22/176 (12%)
Query: 14 LYVGDLHPDISDAQLHDAFA--EFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAI- 70
++VGDLH + +A L+ +FA + + + SV+V R+ + G S YG+V F S A + +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 71 EVKNHSMLN-GKVIRVLWS----------RRDPDVRKSCIGNVFVKNLAESVDSSGLEEI 119
E +M N + R+ W+ PD+ ++FV +L+ V + L E
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDL------SIFVGDLSPDVSDNLLHET 216
Query: 120 F-KKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVG 173
F +KY ++ ++KVV+ A+ G+SKGYGFV+F E A+ ++NG + + + +G
Sbjct: 217 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIG 272
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 19/198 (9%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGK--IVSLAISKDEN-GMSKGFGFVNYENPDDAKRALE 249
+++ +L + EA L F+S + IVS+ + +++N G+S+G+GFV +E+ D A + L
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 250 AMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN--IYVKNIDDNVSD 307
NG+ + + + R + EKR L+ G + I+V ++ +VSD
Sbjct: 163 EFNGTTMPNT--------DQPFRLNWASFSTGEKR----LENNGPDLSIFVGDLSPDVSD 210
Query: 308 EELRDHFSA-CGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLY 365
L + FS S+ +AKV+ D G SKG+GFV F E KA+ +G + +
Sbjct: 211 NLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMR 270
Query: 366 VALAQRKEDRQAQLQLQY 383
+ A ++ Q Q Y
Sbjct: 271 IGPATPRKTNGYQQQGGY 288
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
+FV NL S+ + + E+F + G + + +++ DGK++G+ FV S E A AAI+K +
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFD 156
Query: 162 GSTINDKQIYVG---RFVK---KSERILPGPDASYTN--LYMKNLDLDITEALLKEKFSS 213
++ + I V RF K KS LP P T LY+ NL L+E F++
Sbjct: 157 TFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTA 216
Query: 214 --FGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQL 256
F + + + D G S G+GFV++ ++A+ A+ +NG ++
Sbjct: 217 ADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEI 261
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 15/173 (8%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+V +L +S + + F + + +V + R G++ + +V S ++A AI+
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDKF 155
Query: 74 NHSMLNGKVIRVLWSRR-------DP-DVRKSCIGN----VFVKNLAESVDSSGLEEIFK 121
+ ++G++I V ++RR P D+ G+ ++V NLA S+ L E+F
Sbjct: 156 DTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFT 215
Query: 122 KYG-NILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
N +S++VV AD +G+S GYGFV F + E A AI KLNG I + I +
Sbjct: 216 AADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITL 268
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 90/182 (49%), Gaps = 8/182 (4%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMN 252
L++ NL ++ + E F G + ++ I + ++G ++GF FV + ++A+ A++ +
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFD 156
Query: 253 GSQLGSKILYVARAQK-KAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
Q+ +I+ V+ A++ K + N + K +YV N+ LR
Sbjct: 157 TFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHK-----LYVSNLAWKARSTHLR 211
Query: 312 DHFSAC--GSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
+ F+A +++ V D +G S G+GFV F+T EEA A+ +G G+P+ + +
Sbjct: 212 ELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
Query: 370 QR 371
R
Sbjct: 272 LR 273
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
N +L S + VA + A+ E + EE + LK K ++V N+ ++S ++
Sbjct: 57 NSRRLVSVLCSVAEKETSADEETSQEEKTEETQNSN-LKRK---LFVFNLPWSMSVNDIS 112
Query: 312 DHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQR 371
+ F CG++ + ++++ + G ++GF FV ++ EEA A++ F F G+ + V+ A+R
Sbjct: 113 ELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARR 172
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 17/227 (7%)
Query: 53 LCYGYVNFLSPQDAMQAIEVKNHSMLNGKVIRVLWSRR---DPDVRKSCIGNVFVKNLAE 109
L + N L P++ E ++ NG V RV ++ DPDV +S + NV KNL+
Sbjct: 555 LEWAPGNILEPKNLPDTNEERSDIEENG-VRRVNLEQQVEIDPDVTESNVLNV--KNLSF 611
Query: 110 SVDSSGLEEIFKKY---GNILSSKVVMADDGK---SKGYGFVQFESEESANAAIEKLNGS 163
GL++ F K G ILS ++ + S GYGFV+F+S E+A + L G
Sbjct: 612 KTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDLQG- 670
Query: 164 TINDKQIYVGRFV--KKSERI--LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVS 219
T+ D + RF K+S+++ D T L++KN+ + T+ L++ FS FG+I S
Sbjct: 671 TVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKS 730
Query: 220 LAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARA 266
+ + K G G+ FV + +A A +A+ + + L + A
Sbjct: 731 MRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVLEWA 777
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 26/208 (12%)
Query: 174 RFVKKSERILPGPDASYTN-LYMKNLDLDITEALLKEKFSSF---GKIVSLAI---SKDE 226
R V +++ PD + +N L +KNL T+ LK+ F+ GKI+S+ I K+E
Sbjct: 584 RRVNLEQQVEIDPDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNE 643
Query: 227 NGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKE 286
+S G+GFV +++ + A + G+ L L + E KR +
Sbjct: 644 KYLSSGYGFVEFDSVETATSVYRDLQGTVLDGHALILRFC--------------ENKRSD 689
Query: 287 QILKYKGSN-----IYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCF 341
++ K + ++VKNI + ELR FS G I S ++ K G G+ FV F
Sbjct: 690 KVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEF 749
Query: 342 STPEEANKAVNTFHGFMFHGKPLYVALA 369
T +EA A F+G+ L + A
Sbjct: 750 VTKQEALNAKKALASTHFYGRHLVLEWA 777
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 294 SNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNT 353
S I VKN+ +V +++LRDHFS G IT AK+M+ G S+ FGF+ F + +EA +A+
Sbjct: 2 SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKY 61
Query: 354 FHGFMFHGKPLYVALAQRKEDRQA 377
F+ + V +A + D A
Sbjct: 62 FNNTYLGTSLIIVEIAHKVGDENA 85
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKI--VSLAISKDENGMSKGFGFVNYENPDDAKRALEA 250
L+++NL TE L E FS+FGKI V L + K E S+G ++ Y P+ A RA+E
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDK-ETKRSRGIAYILYLIPECAARAMEE 354
Query: 251 MNGSQLGSKILYVARAQKKAERERILNH------QFEEKRKEQ 287
++ S ++L++ A+ + ++ +N F++KR+EQ
Sbjct: 355 LDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPKTFKQKREEQ 397
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 135/329 (41%), Gaps = 37/329 (11%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
VF+ L V L ++ ++ G I +++ D G SKGY FV F++++ A AIE+L
Sbjct: 98 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 157
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL 220
+ K I K+ L++ N+ + TE ++ G
Sbjct: 158 HSKEFKGKTIRCSLSETKNR------------LFIGNIPKNWTEDEFRKVIEDVGPGDPT 205
Query: 221 AISKDENGMSKGFGFVNYENPDDAKRALEAMNGS--QLGSKILYVARAQKKAERERILNH 278
+++ +GF FV Y N A + + M S +L V A K+ E
Sbjct: 206 NTTRN-----RGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEH---- 256
Query: 279 QFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGF 338
+ +YVKNI +N S E+L++ F G +T V KG + FGF
Sbjct: 257 --------SAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKRDFGF 307
Query: 339 VCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGPSTAII 398
V ++ A KAV + +G+PL V LA+ + +R+ Y+ A P
Sbjct: 308 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPS-SYSYGAAPTPAPFVHPT 366
Query: 399 PGGYPPFYYTATGVVPHVPHRAGLMYQPL 427
GG+ Y A G + AG QP+
Sbjct: 367 FGGFAAAPYGAMGAGLGI---AGSFSQPM 392
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 16/261 (6%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+++G L D+ + L D E + VR+ +D +G S Y +V F + A +AIE
Sbjct: 98 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 157
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
+ GK IR S +F+ N+ ++ ++ + G +
Sbjct: 158 HSKEFKGKTIRCSLS--------ETKNRLFIGNIPKNWTEDEFRKVIEDVGPGDPTNTT- 208
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGST--INDKQIYVGRFVKKSERILPGPDASYT 191
+++G+ FV + + A+ + +K+ S + V KS A
Sbjct: 209 ----RNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVK 264
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
LY+KN+ + + LKE F G++ + ++ G + FGFV+Y A +A++
Sbjct: 265 ALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKRDFGFVHYAERSSALKAVKDT 323
Query: 252 NGSQLGSKILYVARAQKKAER 272
++ + L V A+ +AER
Sbjct: 324 ERYEVNGQPLEVVLAKPQAER 344
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 289 LKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEA 347
L GS +++ + +V +E+LRD G I ++MKD + G SKG+ FV F T + A
Sbjct: 91 LPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVA 150
Query: 348 NKAVNTFHGFMFHGKPLYVALAQRK 372
KA+ H F GK + +L++ K
Sbjct: 151 QKAIEELHSKEFKGKTIRCSLSETK 175
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+++G LH D ++ + F ++ + + RD TG+ +G++ F P + IE
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE-- 78
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGN---------VFVKNLAESVDSSGLEEIFKKYG 124
+ ++NGK + + + + K GN +FV + +V L++ F KYG
Sbjct: 79 DTHVINGKQVEIKRT-----IPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133
Query: 125 NILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
N++ +V+ + +S+G+GFV F+SEE + + K N + D Q+ +
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEI 182
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 22/166 (13%)
Query: 185 GPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDD 243
G AS +++ L D T + + F +G+I I +D + G +GFGF+ + +P
Sbjct: 13 GDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSV 72
Query: 244 AKRALE---AMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKN 300
+ +E +NG Q+ E +R + + + I K I+V
Sbjct: 73 VDKVIEDTHVINGKQV--------------EIKRTIPKGAGGNQSKDI---KTKKIFVGG 115
Query: 301 IDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPE 345
I V+++EL+D F+ G++ +V++D E S+GFGFV F + E
Sbjct: 116 IPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 16/184 (8%)
Query: 100 GNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAI 157
G +F+ L + ++ + F KYG I S V+M D G+ +G+GF+ F + I
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDS-VIMRDRHTGQPRGFGFITFADPSVVDKVI 77
Query: 158 EKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKI 217
E + IN KQ+ + R + K D +++ + +TE LK+ F+ +G +
Sbjct: 78 EDTH--VINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNV 135
Query: 218 VSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQ---KKAERE 273
V + +D E S+GFGFV +++ + L N ++ +A Q KKAE +
Sbjct: 136 VEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN-------MIDMADTQVEIKKAEPK 188
Query: 274 RILN 277
+ LN
Sbjct: 189 KSLN 192
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 23/194 (11%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEKL 160
+FV NL +VDS+ L ++F+ GN+ +V+ G+S+G+GFV S AA ++
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 161 NGSTINDKQIYVGRFV---KKSERILPGP------------------DASYTNLYMKNLD 199
NG ++ + + V K+ + GP S +Y+ NL
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212
Query: 200 LDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGS 258
+ + L+ FS GK+V + D ++G SKGFGFV Y++ + + A+++++G+ L
Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDG 272
Query: 259 KILYVARAQKKAER 272
+ + V+ A+ + R
Sbjct: 273 RQIRVSEAEARPPR 286
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ NL ++ A L + F S G + + + D+ G S+GFGFV + + + A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 252 NGSQLGSKILYVARAQKKAERERILNH---------QFEEKRKEQILKYKGSNIYVKNID 302
NG +L + L V +RE + G+ +YV N+
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212
Query: 303 DNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHG 361
V D L FS G + A+V+ D + G SKGFGFV + + +E A+ + G G
Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDG 272
Query: 362 KPLYVALAQRKEDRQ 376
+ + V+ A+ + R+
Sbjct: 273 RQIRVSEAEARPPRR 287
>AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670126-16674189 REVERSE LENGTH=567
Length = 567
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 142/331 (42%), Gaps = 49/331 (14%)
Query: 86 LWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFV 145
L S ++ VR+ + FV NL + + FKK G ++ ++++ GK G GFV
Sbjct: 57 LISVKEAAVREKTL---FVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFV 113
Query: 146 QFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPG-------------------- 185
+F S A A++K NG +++ +I++ KK+ + P
Sbjct: 114 EFASVNEAEEALQKKNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPI 173
Query: 186 ------PDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYE 239
P++ L++ NL + + + F+ G++VS+ + + G G+GFV +
Sbjct: 174 EEDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFA 233
Query: 240 NPDDAKRALEAMNGSQLGSKILYVARAQ--------KKAERERILNHQF---------EE 282
+ D+ K+ALE NG L +++ A+ K E++ + E+
Sbjct: 234 SADETKKALENKNGEYLHDHKIFIDVAKTAPYPPGPKYNLVEKLCYEDYLRRESLPIDED 293
Query: 283 KRKEQILKYKG---SNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFV 339
+ + ++ G ++V ++ + + F G + +++ + G G FV
Sbjct: 294 ETPPEFVEAVGVRKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHTGKHVGCAFV 353
Query: 340 CFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
F + EA A+ T +G + +++ +A+
Sbjct: 354 EFGSANEAKMALETKNGEYLNDCKIFLEVAK 384
>AT5G03580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:906956-907422 REVERSE LENGTH=101
Length = 101
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 190 YTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALE 249
+T+LY+ NLD ++E +L FS FGK++ ++KD G S+GF F+ +E+ D A RA+
Sbjct: 16 FTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAML 75
Query: 250 AMNGSQLGSKILYVARAQK 268
M+G +G KIL V R K
Sbjct: 76 HMDGRLIGQKILCVQRTPK 94
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 26/204 (12%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+++G LH D ++ + F ++ + + RD TG+ +G++ F P + IE
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE-- 78
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGN---------VFVKNLAESVDSSGLEEIFKKYG 124
+ ++NGK + + R P K GN +FV + +V L++ F KYG
Sbjct: 79 DTHVINGKQVEI--KRTIP---KGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133
Query: 125 NILSSKVVMA-DDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERIL 183
N++ +V+ + +S+G+GFV F+SEE + + K N + D Q+ + ++
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVSLYKW-------- 185
Query: 184 PGPDASYTNLYMKNLDLDITEALL 207
G + + Y+ DI L
Sbjct: 186 -GLEFWFMMTYLSWFQFDIFSLFL 208
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 22/180 (12%)
Query: 178 KSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFV 236
+++ G AS +++ L D T + + F +G+I I +D + G +GFGF+
Sbjct: 6 RNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFI 65
Query: 237 NYENPDDAKRALE---AMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKG 293
+ +P + +E +NG K+ E +R + + + I K
Sbjct: 66 TFADPSVVDKVIEDTHVING--------------KQVEIKRTIPKGAGGNQSKDI---KT 108
Query: 294 SNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVN 352
I+V I V+++EL+D F+ G++ +V++D E S+GFGFV F + E ++ ++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 100 GNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAI 157
G +F+ L + ++ + F KYG I S V+M D G+ +G+GF+ F + I
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDS-VIMRDRHTGQPRGFGFITFADPSVVDKVI 77
Query: 158 EKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKI 217
E + IN KQ+ + R + K D +++ + +TE LK+ F+ +G +
Sbjct: 78 EDTH--VINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNV 135
Query: 218 VSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMN 252
V + +D E S+GFGFV +++ + L N
Sbjct: 136 VEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 99/178 (55%), Gaps = 6/178 (3%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSL-AISKD-ENGMSKGFGFVNYENPDDAKRALEA 250
LY+ N+ A L + F FG ++S+ +S++ + G S+G G+V + + AK A+ +
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 169
Query: 251 MNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN-IYVKNIDDNVSDEE 309
++G+++G + + V + R N + ++IL Y+ + +YV N+ +
Sbjct: 170 LDGTEVGGREMRVRYSVDMNPGTR-RNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDG 228
Query: 310 LRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
LR+HFS G+I S +V+ D K G ++ F F+ F++ EE + A+ +F+G + G+ + V
Sbjct: 229 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRIIV 285
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 19/185 (10%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVC-RDSSTGRSLCYGYVNFLSPQDAMQAIEV 72
LYV ++ AQL D F F + SV V R+ TG S GYV S A AI
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 169
Query: 73 KNHSMLNGKVIRVLWS-------RRDPDVRKSCIG---------NVFVKNLAESVDSSGL 116
+ + + G+ +RV +S RR+P+V S V+V NL GL
Sbjct: 170 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 229
Query: 117 EEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRF 175
F K+G I+S++V+ G+++ + F+ F S E +AA+ NG+ ++I V
Sbjct: 230 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNGTQYEGRRIIVREG 288
Query: 176 VKKSE 180
++KSE
Sbjct: 289 IEKSE 293
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 98/199 (49%), Gaps = 17/199 (8%)
Query: 88 SRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFV 145
S+ +P V+K ++V N+ S D + L ++F+ +G ++S +VV + G+S+G G+V
Sbjct: 97 SKAEP-VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYV 155
Query: 146 QFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDA------------SYTNL 193
S SA AI L+G+ + +++ V V + P+ S +
Sbjct: 156 TMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKV 215
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMN 252
Y+ NL L+ FS FG IVS + D + G ++ F F+++ + ++ AL + N
Sbjct: 216 YVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFN 274
Query: 253 GSQLGSKILYVARAQKKAE 271
G+Q + + V +K+E
Sbjct: 275 GTQYEGRRIIVREGIEKSE 293
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 141/333 (42%), Gaps = 37/333 (11%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
VF+ L V L ++ ++ G I +++ D G SKGY FV F++++ A AIE+L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTN-LYMKNLDLDITEALLKEKFSSFGKIV- 218
+ K+ S S +N L++ N+ + TE ++ G V
Sbjct: 178 HS-----KEFKASSTANCS--------LSLSNRLFIGNIPKNWTEDEFRKVIEDVGPGVE 224
Query: 219 SLAISKDENGMS--KGFGFVNYENPDDAKRALEAMNGS--QLGSKILYVARAQKKAERER 274
++ + KD + +GF FV Y N A + + M S +L V A K+ E
Sbjct: 225 NIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEH 284
Query: 275 ILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISK 334
+ +YVKNI +N S E+L++ F G +T V KG +
Sbjct: 285 ------------SAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKR 331
Query: 335 GFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGPS 394
FGFV ++ A KAV + +G+PL V LA+ + +R+ Y+ A P
Sbjct: 332 DFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPS-SYSYGAAPTPAPF 390
Query: 395 TAIIPGGYPPFYYTATGVVPHVPHRAGLMYQPL 427
GG+ Y A G + AG QP+
Sbjct: 391 VHPTFGGFAAAPYGAMGAGLGI---AGSFSQPM 420
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 289 LKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEA 347
L GS +++ + +V +E+LRD G I ++MKD + G SKG+ FV F T + A
Sbjct: 111 LPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVA 170
Query: 348 NKAVNTFHGFMF 359
KA+ H F
Sbjct: 171 QKAIEELHSKEF 182
>AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=497
Length = 497
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 169/377 (44%), Gaps = 48/377 (12%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLS---------PQ 64
L+V +L + + D F++ + +VR+C S TG S C + +
Sbjct: 66 LFVSELSRQTKISDIIDFFSDVGEVVNVRICL-SHTG-SCCVLALLSFLLLVRQTRHWKR 123
Query: 65 DAMQAIEVKNHSMLNGKVIRVLWSRRD--PDVRKSCIGNVFVKNLAESVDSSGLEEIFKK 122
+ +K + + + + S+ + PD V V NL+ + ++ F
Sbjct: 124 RMVNICTIKRFLLKLLRQVHTVQSKDETPPDFVDEV---VIVSNLSPLTKIAHIKGFFNG 180
Query: 123 YGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERI 182
++S ++V+ +GK GYGFV+F S AN A+E+ NG +++ +I + +K E
Sbjct: 181 VAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILL---MKGHESP 237
Query: 183 LPGPDASYT-NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENP 241
+A+ T L++ NL I + + F G++V + + + G G+GFV + +
Sbjct: 238 GFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEFASA 297
Query: 242 DDAKRALEAMNGSQLGSKILYVARAQKKAER--ERILNHQ--FEEK-RKEQIL------- 289
++A++AL NG L + + + A+ R + L+H+ +E+ R+E +L
Sbjct: 298 NEAEKAL-VKNGEYLHNYKISLDGAKTAPHRPPKFCLDHKVWYEDYLRRESLLIKEVEGV 356
Query: 290 -------------KYKGSNIYVKNIDDN--VSDEELRDHFSACGSITSAKVMKDEKGISK 334
+ + ++V N+ N + + + FS G I +++ D G
Sbjct: 357 EGLDETPDFLEEVAARKNTVFVANLPYNCRLIVPTIINFFSDVGEIVHIRIIVDHMGEPV 416
Query: 335 GFGFVCFSTPEEANKAV 351
G GFV F++ EA KA+
Sbjct: 417 GCGFVEFNSSNEAEKAL 433
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 101/202 (50%), Gaps = 23/202 (11%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRAL--- 248
L++ + + +E L++ F SFG+++ I KD G ++GFGFV + +P+ A+R +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 249 EAMNGSQLGSKILY--VARAQKKAERERILNHQFEEKRKEQILKYKGSN----------- 295
++G L I+Y + R+ K ++ + R + ++ K ++
Sbjct: 68 HIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNS 127
Query: 296 --IYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN 352
I+V + +V++ E + +F+ G IT VM D + +GFGF+ + + E +K +
Sbjct: 128 KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 187
Query: 353 -TFHGFMFHGKPLYVALAQRKE 373
TFH +GK + V LA K+
Sbjct: 188 KTFH--ELNGKMVEVKLAVPKD 207
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 95/197 (48%), Gaps = 45/197 (22%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + + S+ +L D F F + + +D +TGR+ +G+V F P A + + +K
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 74 NHSMLNGKVI--RVLWSR---------------------RDPDV-----RKSCIGN---- 101
+ +++GK++ +++++ RD V S G+
Sbjct: 68 H--IIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGPS 125
Query: 102 ----VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANA 155
+FV LA SV + ++ F ++G +++ VVM D + +G+GF+ ++SEE+ +
Sbjct: 126 NSKKIFVGGLASSVTEAEFKKYFAQFG-MITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 184
Query: 156 AIEK----LNGSTINDK 168
++K LNG + K
Sbjct: 185 VLQKTFHELNGKMVEVK 201
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 12/152 (7%)
Query: 22 DISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVKNHSMLNGK 81
DI L D ++F +L V +D STGRS +GYV F S +DA A+ K L +
Sbjct: 13 DIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--KGEHFLGNR 70
Query: 82 VIRVLWSRRDPDVRKSC--IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKS 139
++ V + ++R+ + +FV + SV S F++YG I + + M D S
Sbjct: 71 ILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEI--TDLYMPKDYNS 128
Query: 140 K---GYGFVQFESEESANAAIE---KLNGSTI 165
K G GF+ F S +S +E L G+T+
Sbjct: 129 KQHRGIGFITFSSADSVEDLMEDTHDLGGTTV 160
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 20/184 (10%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
L + + DI LK+ S FG + + KD + G S+GFG+V + + +DAK AL+
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE 64
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+ LG++IL V A K EE R+ K + I+V I +VS+ + R
Sbjct: 65 H--FLGNRILEVKVATPK-----------EEMRQPAK---KVTRIFVARIPSSVSESDFR 108
Query: 312 DHFSACGSITSAKVMKDEKGIS-KGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
HF G IT + KD +G GF+ FS+ + + H G + V A
Sbjct: 109 SHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD--LGGTTVAVDRAT 166
Query: 371 RKED 374
KED
Sbjct: 167 PKED 170
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 12/152 (7%)
Query: 22 DISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVKNHSMLNGK 81
DI L D ++F +L V +D STGRS +GYV F S +DA A+ K L +
Sbjct: 13 DIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--KGEHFLGNR 70
Query: 82 VIRVLWSRRDPDVRKSC--IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKS 139
++ V + ++R+ + +FV + SV S F++YG I + + M D S
Sbjct: 71 ILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEI--TDLYMPKDYNS 128
Query: 140 K---GYGFVQFESEESANAAIE---KLNGSTI 165
K G GF+ F S +S +E L G+T+
Sbjct: 129 KQHRGIGFITFSSADSVEDLMEDTHDLGGTTV 160
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 20/184 (10%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
L + + DI LK+ S FG + + KD + G S+GFG+V + + +DAK AL+
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE 64
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+ LG++IL V A K EE R+ K + I+V I +VS+ + R
Sbjct: 65 H--FLGNRILEVKVATPK-----------EEMRQPAK---KVTRIFVARIPSSVSESDFR 108
Query: 312 DHFSACGSITSAKVMKDEKGIS-KGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
HF G IT + KD +G GF+ FS+ + + H G + V A
Sbjct: 109 SHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD--LGGTTVAVDRAT 166
Query: 371 RKED 374
KED
Sbjct: 167 PKED 170
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 42/277 (15%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
N++V +L S L E+F +YG+I V S+G+ F+ + E A AA E L
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVY-----SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL 220
G+ +N QI + + + P +L++ + ++++ L+E+FS FGKI
Sbjct: 74 QGANLNGSQIKI-EYAR--------PAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDF 124
Query: 221 AISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYV----ARAQKKAE----- 271
++ + F++Y DDA +A ++MNG +G L V ++A KK +
Sbjct: 125 RFLRE-----RKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWAGSY 178
Query: 272 --RERILNHQFE-----EKRKEQILKYKGSNIYVKNIDDNVSDEE-LRDHFSACGSITSA 323
R +NH+ + E K + K I +DE+ L + G I
Sbjct: 179 DNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERV 238
Query: 324 KVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
K S+ F V F + EEA + G +F+
Sbjct: 239 KSYP-----SRNFALVEFRSAEEARQCKEGLQGRLFN 270
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 42/277 (15%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
N++V +L S L E+F +YG+I V S+G+ F+ + E A AA E L
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVY-----SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL 220
G+ +N QI + + + P +L++ + ++++ L+E+FS FGKI
Sbjct: 74 QGANLNGSQIKI-EYAR--------PAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDF 124
Query: 221 AISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYV----ARAQKKAE----- 271
++ + F++Y DDA +A ++MNG +G L V ++A KK +
Sbjct: 125 RFLRE-----RKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWAGSY 178
Query: 272 --RERILNHQFE-----EKRKEQILKYKGSNIYVKNIDDNVSDEE-LRDHFSACGSITSA 323
R +NH+ + E K + K I +DE+ L + G I
Sbjct: 179 DNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERV 238
Query: 324 KVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
K S+ F V F + EEA + G +F+
Sbjct: 239 KSYP-----SRNFALVEFRSAEEARQCKEGLQGRLFN 270
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 42/277 (15%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
N++V +L S L E+F +YG+I V S+G+ F+ + E A AA E L
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVY-----SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL 220
G+ +N QI + + + P +L++ + ++++ L+E+FS FGKI
Sbjct: 74 QGANLNGSQIKI-EYAR--------PAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDF 124
Query: 221 AISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYV----ARAQKKAE----- 271
++ + F++Y DDA +A ++MNG +G L V ++A KK +
Sbjct: 125 RFLRE-----RKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWAGSY 178
Query: 272 --RERILNHQFE-----EKRKEQILKYKGSNIYVKNIDDNVSDEE-LRDHFSACGSITSA 323
R +NH+ + E K + K I +DE+ L + G I
Sbjct: 179 DNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERV 238
Query: 324 KVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
K S+ F V F + EEA + G +F+
Sbjct: 239 KSYP-----SRNFALVEFRSAEEARQCKEGLQGRLFN 270
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 42/277 (15%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
N++V +L S L E+F +YG+I V S+G+ F+ + E A AA E L
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVY-----SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL 220
G+ +N QI + + + P +L++ + ++++ L+E+FS FGKI
Sbjct: 74 QGANLNGSQIKI-EYAR--------PAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDF 124
Query: 221 AISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYV----ARAQKKAE----- 271
++ + F++Y DDA +A ++MNG +G L V ++A KK +
Sbjct: 125 RFLRE-----RKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWAGSY 178
Query: 272 --RERILNHQFE-----EKRKEQILKYKGSNIYVKNIDDNVSDEE-LRDHFSACGSITSA 323
R +NH+ + E K + K I +DE+ L + G I
Sbjct: 179 DNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERV 238
Query: 324 KVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
K S+ F V F + EEA + G +F+
Sbjct: 239 KSYP-----SRNFALVEFRSAEEARQCKEGLQGRLFN 270
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 23/191 (12%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRAL--- 248
L++ + + +E L++ F SFG+++ I KD G ++GFGFV + +P+ A+R +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 249 EAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN----IYVKNIDDN 304
++G + A+K R+ +H K + G + I+V + +
Sbjct: 68 HIIDGK--------IVEAKKAVPRD---DHVVFNKSNSSLQGSPGPSNSKKIFVGGLASS 116
Query: 305 VSDEELRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN-TFHGFMFHGK 362
V++ E + +F+ G IT VM D + +GFGF+ + + E +K + TFH +GK
Sbjct: 117 VTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFH--ELNGK 174
Query: 363 PLYVALAQRKE 373
+ V LA K+
Sbjct: 175 MVEVKLAVPKD 185
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 93/175 (53%), Gaps = 23/175 (13%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + + S+ +L D F F + + +D +TGR+ +G+V F P A + + +K
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 74 NHSMLNGKVI----------RVLWSRRDPDVR----KSCIGNVFVKNLAESVDSSGLEEI 119
+ +++GK++ V++++ + ++ S +FV LA SV + ++
Sbjct: 68 H--IIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 120 FKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAIEK----LNGSTINDK 168
F ++G +++ VVM D + +G+GF+ ++SEE+ + ++K LNG + K
Sbjct: 126 FAQFG-MITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 23/191 (12%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRAL--- 248
L++ + + +E L++ F SFG+++ I KD G ++GFGFV + +P+ A+R +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 249 EAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN----IYVKNIDDN 304
++G + A+K R+ +H K + G + I+V + +
Sbjct: 68 HIIDGK--------IVEAKKAVPRD---DHVVFNKSNSSLQGSPGPSNSKKIFVGGLASS 116
Query: 305 VSDEELRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN-TFHGFMFHGK 362
V++ E + +F+ G IT VM D + +GFGF+ + + E +K + TFH +GK
Sbjct: 117 VTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFH--ELNGK 174
Query: 363 PLYVALAQRKE 373
+ V LA K+
Sbjct: 175 MVEVKLAVPKD 185
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 93/175 (53%), Gaps = 23/175 (13%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + + S+ +L D F F + + +D +TGR+ +G+V F P A + + +K
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 74 NHSMLNGKVI----------RVLWSRRDPDVR----KSCIGNVFVKNLAESVDSSGLEEI 119
+ +++GK++ V++++ + ++ S +FV LA SV + ++
Sbjct: 68 H--IIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 120 FKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAIEK----LNGSTINDK 168
F ++G +++ VVM D + +G+GF+ ++SEE+ + ++K LNG + K
Sbjct: 126 FAQFG-MITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 19/193 (9%)
Query: 188 ASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKR 246
+S L++ ++ TE ++ F G ++ +A+ KD+ G +G FV Y DA R
Sbjct: 42 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 101
Query: 247 ALEAM-NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNV 305
A+ A+ N L V ERERI +F+ ++V +++
Sbjct: 102 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK--------------LFVGSLNKQA 147
Query: 306 SDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG-FMFHG--K 362
+++E+ + F G + +M+DE S+G GFV +S+ E A A++ +G + G +
Sbjct: 148 TEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQ 207
Query: 363 PLYVALAQRKEDR 375
PL V A+ K +
Sbjct: 208 PLIVRFAEPKRPK 220
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 84/157 (53%), Gaps = 11/157 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIE-V 72
L+VG + ++ ++ F + N+ V + +D TG+ +V + + +DA +AI +
Sbjct: 47 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 106
Query: 73 KNHSMLNGKV--IRVLWSRRDPDVRKSCIGNV----FVKNLAESVDSSGLEEIFKKYGNI 126
N L G ++V ++ D + IG + FV +L + +EEIF ++G++
Sbjct: 107 HNQITLPGGTGPVQVRYA----DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHV 162
Query: 127 LSSKVVMADDGKSKGYGFVQFESEESANAAIEKLNGS 163
++ + +S+G GFV++ S+E+A AAI+ LNG+
Sbjct: 163 EDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 199
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 96 KSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADD---GKSKGYGFVQFESEES 152
+S +FV ++ + + F+++GN+L +V + D G+ +G FV++ + +
Sbjct: 41 RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVL--EVALIKDKRTGQQQGCCFVKYATSKD 98
Query: 153 ANAAIEKLNGSTI---NDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKE 209
A+ AI L+ + V + ERI L++ +L+ TE ++E
Sbjct: 99 ADRAIRALHNQITLPGGTGPVQVRYADGERERI----GTLEFKLFVGSLNKQATEKEVEE 154
Query: 210 KFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGS 254
F FG + + + +DE S+G GFV Y + + A A++ +NG+
Sbjct: 155 IFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 199
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 19/193 (9%)
Query: 188 ASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKR 246
+S L++ ++ TE ++ F G ++ +A+ KD+ G +G FV Y DA R
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 247 ALEAM-NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNV 305
A+ A+ N L V ERERI +F+ ++V +++
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK--------------LFVGSLNKQA 222
Query: 306 SDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG-FMFHG--K 362
+++E+ + F G + +M+DE S+G GFV +S+ E A A++ +G + G +
Sbjct: 223 TEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQ 282
Query: 363 PLYVALAQRKEDR 375
PL V A+ K +
Sbjct: 283 PLIVRFAEPKRPK 295
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 84/157 (53%), Gaps = 11/157 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIE-V 72
L+VG + ++ ++ F + N+ V + +D TG+ +V + + +DA +AI +
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 73 KNHSMLNGKV--IRVLWSRRDPDVRKSCIGNV----FVKNLAESVDSSGLEEIFKKYGNI 126
N L G ++V ++ D + IG + FV +L + +EEIF ++G++
Sbjct: 182 HNQITLPGGTGPVQVRYA----DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHV 237
Query: 127 LSSKVVMADDGKSKGYGFVQFESEESANAAIEKLNGS 163
++ + +S+G GFV++ S+E+A AAI+ LNG+
Sbjct: 238 EDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 96 KSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADD---GKSKGYGFVQFESEES 152
+S +FV ++ + + F+++GN+L +V + D G+ +G FV++ + +
Sbjct: 116 RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVL--EVALIKDKRTGQQQGCCFVKYATSKD 173
Query: 153 ANAAIEKLNGSTI---NDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKE 209
A+ AI L+ + V + ERI L++ +L+ TE ++E
Sbjct: 174 ADRAIRALHNQITLPGGTGPVQVRYADGERERI----GTLEFKLFVGSLNKQATEKEVEE 229
Query: 210 KFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGS 254
F FG + + + +DE S+G GFV Y + + A A++ +NG+
Sbjct: 230 IFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 8/196 (4%)
Query: 177 KKSERILP--GPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGF 233
KK +++ P P+ ++ + L TE + E FS GK+ + I D + S+G
Sbjct: 215 KKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGI 274
Query: 234 GFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKG 293
G+V + + A+ A++G L + + V ++ AE+ + + + Y G
Sbjct: 275 GYVEFYDTMSVPMAI-ALSGQPLLGQPVMVKPSE--AEKNLVQSTTAAAGAGGMLGPYSG 331
Query: 294 S--NIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAV 351
+YV N+ N+S+++LR F + GS+ +V +DE G+ KGFGFV F+ E+A A+
Sbjct: 332 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 391
Query: 352 NTFHGFMFHGKPLYVA 367
N G+ + V+
Sbjct: 392 NLNGQLEIAGRAIKVS 407
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 23/170 (13%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEK 159
VF +A + E F + G + +++M +S+G G+V+F S AI
Sbjct: 232 TVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-A 290
Query: 160 LNGSTINDKQIYVGRFVKKSE---------------RILPGP-DASYTNLYMKNLDLDIT 203
L+G + + + VK SE + GP LY+ NL ++++
Sbjct: 291 LSGQPLLGQPV----MVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMS 346
Query: 204 EALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
E L++ F SFG + + + +DE G+ KGFGFV + +DA+ AL +NG
Sbjct: 347 EDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNG 395
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 19/193 (9%)
Query: 188 ASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKR 246
+S L++ ++ TE ++ F G ++ +A+ KD+ G +G FV Y DA R
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 247 ALEAM-NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNV 305
A+ A+ N L V ERERI +F+ ++V +++
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK--------------LFVGSLNKQA 222
Query: 306 SDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG-FMFHG--K 362
+++E+ + F G + +M+DE S+G GFV +S+ E A A++ +G + G +
Sbjct: 223 TEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQ 282
Query: 363 PLYVALAQRKEDR 375
PL V A+ K +
Sbjct: 283 PLIVRFAEPKRPK 295
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 84/157 (53%), Gaps = 11/157 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIE-V 72
L+VG + ++ ++ F + N+ V + +D TG+ +V + + +DA +AI +
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 73 KNHSMLNGKV--IRVLWSRRDPDVRKSCIGNV----FVKNLAESVDSSGLEEIFKKYGNI 126
N L G ++V ++ D + IG + FV +L + +EEIF ++G++
Sbjct: 182 HNQITLPGGTGPVQVRYA----DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHV 237
Query: 127 LSSKVVMADDGKSKGYGFVQFESEESANAAIEKLNGS 163
++ + +S+G GFV++ S+E+A AAI+ LNG+
Sbjct: 238 EDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 96 KSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADD---GKSKGYGFVQFESEES 152
+S +FV ++ + + F+++GN+L +V + D G+ +G FV++ + +
Sbjct: 116 RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVL--EVALIKDKRTGQQQGCCFVKYATSKD 173
Query: 153 ANAAIEKLNGSTI---NDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKE 209
A+ AI L+ + V + ERI L++ +L+ TE ++E
Sbjct: 174 ADRAIRALHNQITLPGGTGPVQVRYADGERERI----GTLEFKLFVGSLNKQATEKEVEE 229
Query: 210 KFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGS 254
F FG + + + +DE S+G GFV Y + + A A++ +NG+
Sbjct: 230 IFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAK 245
D+ L++ + + E L+E F+++G++ + +D+ G +GFGFV + +P
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 246 RALEAMNGSQLGSKILYVARAQKKAERE---RILNHQFEEKRKEQILKY-KGSNIYVKNI 301
R L+ + + ++ + V RA + E++ R N R Y K I+V +
Sbjct: 62 RVLQEKH--SIDTREVDVKRAMSREEQQVSGRTGN--LNTSRSSGGDAYNKTKKIFVGGL 117
Query: 302 DDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAVN-TFH 355
++DEE R +F G +T +M D+ +GFGFV F + + + ++ TFH
Sbjct: 118 PPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFH 173
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 20/166 (12%)
Query: 100 GNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAI 157
G +FV ++ D L E F YG + S +VM D G+ +G+GFV F + +
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEV-SQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVL 64
Query: 158 EKLNGSTINDKQIYVGRFVKKSERILPGPDASYTN--------------LYMKNLDLDIT 203
++ + +I+ +++ V R + + E+ + G + +++ L +T
Sbjct: 65 QEKH--SIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122
Query: 204 EALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRAL 248
+ ++ F +G + +AI D+ +GFGFV++++ D L
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 28/187 (14%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VG + + + +L + F + ++ V RD TGR +G+V F P + ++ K
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 74 NHSMLNGKV-IRVLWSRRDPDV---------RKSCIGN-------VFVKNLAESVDSSGL 116
HS+ +V ++ SR + V +S G+ +FV L ++
Sbjct: 68 -HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEF 126
Query: 117 EEIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGSTIND---KQIY 171
+ F+ YG + + +M D + +G+GFV F+SE++ ++ + K T +D KQ+
Sbjct: 127 RQYFEVYGPV-TDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK----TFHDLSGKQVE 181
Query: 172 VGRFVKK 178
V R + K
Sbjct: 182 VKRALPK 188
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 119/274 (43%), Gaps = 22/274 (8%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+Y+G + D ++ L + VR+ R+ +G Y +V F S A +AI+
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N++ GK I+ ++ +F+ N V + +E KK N + V +
Sbjct: 154 NNTDFRGKRIKCSTTQ--------AKHRLFLGN----VPRNWMESDIKKAANRIGPGVQI 201
Query: 134 AD-------DGKSKGYGFVQFESEESANAAIEKLNGST--INDKQIYVGRFVKKSERILP 184
+ G+++G+ F+++ + A + +K++ + ++D V +S
Sbjct: 202 VELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGD 261
Query: 185 GPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKG-FGFVNYENPDD 243
+ LY+KNL DIT+ LK F GKI+ + I + G +GFV+Y
Sbjct: 262 SSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTS 321
Query: 244 AKRALEAMNGSQLGSKILYVARAQKKAERERILN 277
RAL+ ++ +L A+ +A+++ N
Sbjct: 322 VMRALKNTERYEIDGHMLDCTLAKPQADQKTNTN 355
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 119/274 (43%), Gaps = 22/274 (8%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+Y+G + D ++ L + VR+ R+ +G Y +V F S A +AI+
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N++ GK I+ ++ +F+ N V + +E KK N + V +
Sbjct: 154 NNTDFRGKRIKCSTTQ--------AKHRLFLGN----VPRNWMESDIKKAANRIGPGVQI 201
Query: 134 AD-------DGKSKGYGFVQFESEESANAAIEKLNGST--INDKQIYVGRFVKKSERILP 184
+ G+++G+ F+++ + A + +K++ + ++D V +S
Sbjct: 202 VELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGD 261
Query: 185 GPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKG-FGFVNYENPDD 243
+ LY+KNL DIT+ LK F GKI+ + I + G +GFV+Y
Sbjct: 262 SSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTS 321
Query: 244 AKRALEAMNGSQLGSKILYVARAQKKAERERILN 277
RAL+ ++ +L A+ +A+++ N
Sbjct: 322 VMRALKNTERYEIDGHMLDCTLAKPQADQKTNTN 355
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 86/168 (51%), Gaps = 7/168 (4%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E LL+E FS+FG+++ + + +++ G +GFGFV + +P R L+
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 252 NGSQLGSKILYVARAQKKAERERI-LNHQFEEKRK-EQILKYKGSNIYVKNIDDNVSDEE 309
+ + ++ + V RA + E+ + F R + + I+V + ++ +E
Sbjct: 68 H--HIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 310 LRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN-TFH 355
R +F G ++ A +M D+ +GFGFV F + + + ++ TFH
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFH 173
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 20/183 (10%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D + L + F+ F + V V R+ +TGR +G+V F P + ++ K
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 74 NHSMLNGKVIRVLWSRRD--PDVRKSCIG--------------NVFVKNLAESVDSSGLE 117
+H ++ SR + P R +FV L ++ S
Sbjct: 68 HHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFR 127
Query: 118 EIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRF 175
F+ YG + S V+M D + +G+GFV F+SE+S + + K +N KQ+ V R
Sbjct: 128 AYFETYGPV-SDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTF-HDLNGKQVEVKRA 185
Query: 176 VKK 178
+ K
Sbjct: 186 LPK 188
>AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr3:22900311-22902159 REVERSE LENGTH=264
Length = 264
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 22/175 (12%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
VFV N S LE +F KYG + +V M GY FV FE E A AI KL+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRV--DRVDM-----KSGYAFVYFEDERDAEDAIRKLD 56
Query: 162 GSTINDKQIYVGRFVKKSERILPGPDA-------SYTNLYMKNLD-LDITEALLKEKFSS 213
++ + K ER P DA L++ N D + E +++ F
Sbjct: 57 NFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEP 116
Query: 214 FGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQK 268
+GK+ ++ I ++ F FV +E +DA +ALEA S++ +++ V A K
Sbjct: 117 YGKVTNVRIRRN-------FSFVQFETQEDATKALEATQRSKILDRVVSVEYALK 164
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAI--- 157
+FV L + L + FK+YG I K V+ G+SKGYGF+ F+S A A+
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 158 EKLNGSTINDKQIYVGRFVKKSERILPG----PDASYTNLYMKNLDLDITEALLKEKFSS 213
+K G+ + Q+ V+ + + P P+ +Y+ N+ DI L E FS
Sbjct: 190 QKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSR 249
Query: 214 FGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
FG+I + D+ G KGF Y + + AK+ALE
Sbjct: 250 FGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAI--- 157
+FV L + L + FK+YG I K V+ G+SKGYGF+ F+S A A+
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 158 EKLNGSTINDKQIYVGRFVKKSERILPG----PDASYTNLYMKNLDLDITEALLKEKFSS 213
+K G+ + Q+ V+ + + P P+ +Y+ N+ DI L E FS
Sbjct: 190 QKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSR 249
Query: 214 FGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
FG+I + D+ G KGF Y + + AK+ALE
Sbjct: 250 FGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 29/221 (13%)
Query: 61 LSPQDAMQAIEVKNHS----MLNGKVIR---VLWSRR---DPDVRKSCIGNVFVKNLAES 110
LSPQDA + IE +L ++R VL S R D D+ + +F++ LA
Sbjct: 29 LSPQDARKIIERFTTDQLLDLLQEAIVRHPDVLESVRLTADSDISQR---KLFIRGLAAD 85
Query: 111 VDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAI----EKLNGST 164
+ GL +F YG+ L +V+ D GKSKGYGFV F + A A+ +K++G
Sbjct: 86 TTTEGLRSLFSSYGD-LEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRV 144
Query: 165 INDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISK 224
+ G S+ D S +Y+ N+ D+ L F ++G + +
Sbjct: 145 TVTQLAASGNQGTGSQIA----DISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGF 200
Query: 225 DE-NGMSKGFGFVNYENPDDAKRAL----EAMNGSQLGSKI 260
D+ G S+GF Y+ + A+ AL + ++G L K+
Sbjct: 201 DKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKL 241
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 22/182 (12%)
Query: 176 VKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFG 234
V +S R+ D S L+++ L D T L+ FSS+G + + D+ G SKG+G
Sbjct: 60 VLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYG 119
Query: 235 FVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQF----EEKRKEQILK 290
FV + + D A AL+ KK + R+ Q + QI
Sbjct: 120 FVTFMHVDGALLALK---------------EPSKKID-GRVTVTQLAASGNQGTGSQIAD 163
Query: 291 YKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANK 349
IYV N+ ++ + L +HF A G + + D+ G S+GF + T E A
Sbjct: 164 ISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQA 223
Query: 350 AV 351
A+
Sbjct: 224 AL 225
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 29/221 (13%)
Query: 61 LSPQDAMQAIEVKNHS----MLNGKVIR---VLWSRR---DPDVRKSCIGNVFVKNLAES 110
LSPQDA + IE +L ++R VL S R D D+ + +F++ LA
Sbjct: 29 LSPQDARKIIERFTTDQLLDLLQEAIVRHPDVLESVRLTADSDISQR---KLFIRGLAAD 85
Query: 111 VDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAI----EKLNGST 164
+ GL +F YG+ L +V+ D GKSKGYGFV F + A A+ +K++G
Sbjct: 86 TTTEGLRSLFSSYGD-LEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRV 144
Query: 165 INDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISK 224
+ G S+ D S +Y+ N+ D+ L F ++G + +
Sbjct: 145 TVTQLAASGNQGTGSQIA----DISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGF 200
Query: 225 DE-NGMSKGFGFVNYENPDDAKRAL----EAMNGSQLGSKI 260
D+ G S+GF Y+ + A+ AL + ++G L K+
Sbjct: 201 DKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKL 241
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 22/182 (12%)
Query: 176 VKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFG 234
V +S R+ D S L+++ L D T L+ FSS+G + + D+ G SKG+G
Sbjct: 60 VLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYG 119
Query: 235 FVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQF----EEKRKEQILK 290
FV + + D A AL+ KK + R+ Q + QI
Sbjct: 120 FVTFMHVDGALLALK---------------EPSKKID-GRVTVTQLAASGNQGTGSQIAD 163
Query: 291 YKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANK 349
IYV N+ ++ + L +HF A G + + D+ G S+GF + T E A
Sbjct: 164 ISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQA 223
Query: 350 AV 351
A+
Sbjct: 224 AL 225
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 6/185 (3%)
Query: 186 PDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDA 244
P+ ++ + L TE + E FS GK+ + I D + S+G G+V + +
Sbjct: 177 PERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSV 236
Query: 245 KRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGS--NIYVKNID 302
A+ A++G L + + V ++ AE+ + + + Y G +YV N+
Sbjct: 237 PMAI-ALSGQPLLGQPVMVKPSE--AEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLH 293
Query: 303 DNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGK 362
N+S+++LR F + GS+ +V +DE G+ KGFGFV F+ E+A A+N G+
Sbjct: 294 INMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEIAGR 353
Query: 363 PLYVA 367
+ V+
Sbjct: 354 AIKVS 358
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 23/170 (13%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEK 159
VF +A + E F + G + +++M +S+G G+V+F S AI
Sbjct: 183 TVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-A 241
Query: 160 LNGSTINDKQIYVGRFVKKSE---------------RILPGP-DASYTNLYMKNLDLDIT 203
L+G + + + VK SE + GP LY+ NL ++++
Sbjct: 242 LSGQPLLGQPV----MVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMS 297
Query: 204 EALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
E L++ F SFG + + + +DE G+ KGFGFV + +DA+ AL +NG
Sbjct: 298 EDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNG 346
>AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 |
chr1:20029262-20031243 REVERSE LENGTH=314
Length = 314
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 9/182 (4%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKR 246
D+ +Y+ ++D +TE L FSS G++V I D N + + F FV + + A+
Sbjct: 124 DSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLR-FAFVEFSDDQGARS 182
Query: 247 ALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVS 306
AL ++ G+ +G Y R +N F R E + IY N+D N +
Sbjct: 183 AL-SLGGTMIG---YYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTIYCTNVDKNAT 237
Query: 307 DEELRDHF-SACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLY 365
++++ F SACG +T +++ D+ S FV F+ E A A+N G + +P+
Sbjct: 238 EDDVNTFFQSACGEVTRLRLLGDQVH-STRIAFVEFAMAESAVAALNC-SGIVLGSQPIR 295
Query: 366 VA 367
V+
Sbjct: 296 VS 297
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 93/186 (50%), Gaps = 9/186 (4%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E L++ FS++G +V I +D G ++GFGF+ + +P ++R + M
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN--IYVKNIDDNVSDEE 309
+ + + + +A + +++ + H + G I+V + ++++EE
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 310 LRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN-TFHGFMFHGKPLYVA 367
+++F G+I VM D +GFGF+ F + + ++ ++ TFH +GK + V
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH--ELNGKLVEVK 183
Query: 368 LAQRKE 373
A KE
Sbjct: 184 RAVPKE 189
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 24/185 (12%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D + +L D F+ + ++ + RD +TGR+ +G++ F P + + I K
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 74 NHSMLNGKVI-----------RVLWSRRDPDVRKSCIGN-------VFVKNLAESVDSSG 115
+ +++G+ + +VL P S + +FV L S+
Sbjct: 68 H--IIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 116 LEEIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVG 173
+ F ++G I + VVM D + +G+GF+ F+S+++ + + K +N K + V
Sbjct: 126 FKNYFDQFGTI-ADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTF-HELNGKLVEVK 183
Query: 174 RFVKK 178
R V K
Sbjct: 184 RAVPK 188
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 93/186 (50%), Gaps = 9/186 (4%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E L++ FS++G +V I +D G ++GFGF+ + +P ++R + M
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN--IYVKNIDDNVSDEE 309
+ + + + +A + +++ + H + G I+V + ++++EE
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 310 LRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN-TFHGFMFHGKPLYVA 367
+++F G+I VM D +GFGF+ F + + ++ ++ TFH +GK + V
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH--ELNGKLVEVK 183
Query: 368 LAQRKE 373
A KE
Sbjct: 184 RAVPKE 189
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 24/185 (12%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D + +L D F+ + ++ + RD +TGR+ +G++ F P + + I K
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 74 NHSMLNGKVI-----------RVLWSRRDPDVRKSCIGN-------VFVKNLAESVDSSG 115
+ +++G+ + +VL P S + +FV L S+
Sbjct: 68 H--IIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 116 LEEIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVG 173
+ F ++G I + VVM D + +G+GF+ F+S+++ + + K +N K + V
Sbjct: 126 FKNYFDQFGTI-ADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTF-HELNGKLVEVK 183
Query: 174 RFVKK 178
R V K
Sbjct: 184 RAVPK 188
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 13/157 (8%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
L+ NL I + ++ F G++V + +S ++G KG+G + + +P++A++ALE M
Sbjct: 385 TLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALE-M 443
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEE-- 309
NG L + + + A ER RK + + + IYV+ ++ ++E
Sbjct: 444 NGKLLLGRDVRLDLAN-----ERGTPRNSNPGRKGEGSQSR--TIYVRGFSSSLGEDEIK 496
Query: 310 --LRDHFSACGSITSAKVMKD-EKGISKGFGFVCFST 343
LR HFS CG +T V D E G S+GF ++ ++
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS 533
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 26/179 (14%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
+F NL+ + S +E FK+ G ++ ++ DDG KGYG ++F S E A A+E +
Sbjct: 385 TLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALE-M 443
Query: 161 NGSTINDKQIYVGRFVK---KSERILP--------GPDASYTNLYMK----NLDLDITEA 205
NG ++ +GR V+ +ER P G + +Y++ +L D +
Sbjct: 444 NG------KLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKK 497
Query: 206 LLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYV 263
L+ FS G++ + + D E G S+GF +++ + D AL+ ++GS++G ++V
Sbjct: 498 ELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD--EALQ-LSGSEIGGGNIHV 553
>AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 |
chr1:20029262-20031243 REVERSE LENGTH=308
Length = 308
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 9/182 (4%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKR 246
D+ +Y+ ++D +TE L FSS G++V I D N + + F FV + + A+
Sbjct: 118 DSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLR-FAFVEFSDDQGARS 176
Query: 247 ALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVS 306
AL ++ G+ +G Y R +N F R E + IY N+D N +
Sbjct: 177 AL-SLGGTMIG---YYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTIYCTNVDKNAT 231
Query: 307 DEELRDHF-SACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLY 365
++++ F SACG +T +++ D+ ++ FV F+ E A A+N G + +P+
Sbjct: 232 EDDVNTFFQSACGEVTRLRLLGDQVHSTR-IAFVEFAMAESAVAALNC-SGIVLGSQPIR 289
Query: 366 VA 367
V+
Sbjct: 290 VS 291
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 93/186 (50%), Gaps = 9/186 (4%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E L++ FS++G +V I +D G ++GFGF+ + +P ++R + M
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN--IYVKNIDDNVSDEE 309
+ + + + +A + +++ + H + G I+V + ++++EE
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 310 LRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN-TFHGFMFHGKPLYVA 367
+++F G+I VM D +GFGF+ F + + ++ ++ TFH +GK + V
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH--ELNGKLVEVK 183
Query: 368 LAQRKE 373
A KE
Sbjct: 184 RAVPKE 189
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 24/185 (12%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D + +L D F+ + ++ + RD +TGR+ +G++ F P + + I K
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 74 NHSMLNGKVI-----------RVLWSRRDPDVRKSCIGN-------VFVKNLAESVDSSG 115
+ +++G+ + +VL P S + +FV L S+
Sbjct: 68 H--IIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 116 LEEIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVG 173
+ F ++G I + VVM D + +G+GF+ F+S+++ + + K +N K + V
Sbjct: 126 FKNYFDQFGTI-ADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTF-HELNGKLVEVK 183
Query: 174 RFVKK 178
R V K
Sbjct: 184 RAVPK 188
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 93/186 (50%), Gaps = 9/186 (4%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E L++ FS++G +V I +D G ++GFGF+ + +P ++R + M
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN--IYVKNIDDNVSDEE 309
+ + + + +A + +++ + H + G I+V + ++++EE
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 310 LRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN-TFHGFMFHGKPLYVA 367
+++F G+I VM D +GFGF+ F + + ++ ++ TFH +GK + V
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH--ELNGKLVEVK 183
Query: 368 LAQRKE 373
A KE
Sbjct: 184 RAVPKE 189
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 24/185 (12%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D + +L D F+ + ++ + RD +TGR+ +G++ F P + + I K
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 74 NHSMLNGKVI-----------RVLWSRRDPDVRKSCIGN-------VFVKNLAESVDSSG 115
+ +++G+ + +VL P S + +FV L S+
Sbjct: 68 H--IIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 116 LEEIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVG 173
+ F ++G I + VVM D + +G+GF+ F+S+++ + + K +N K + V
Sbjct: 126 FKNYFDQFGTI-ADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTF-HELNGKLVEVK 183
Query: 174 RFVKK 178
R V K
Sbjct: 184 RAVPK 188
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 100 GNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAI 157
G +FV LA S+ + F KYG I S V+M D G+ +G+GFV + + ++ +
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDS-VIMKDRKTGQPRGFGFVTY----ADSSVV 96
Query: 158 EKLNGSTINDKQIYVGRFVKKSERILPGP----DASYTNLYMKNLDLDITEALLKEKFSS 213
+K+ I D I +G+ V+ I G D +++ + + + KE F
Sbjct: 97 DKV----IQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQ 152
Query: 214 FGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
FG++ I +D + G S+GFGFV YE+ D L N +L + + +A+ K
Sbjct: 153 FGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
++VG L + + A+ F ++ + + +D TG+ +G+V + + I+
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-D 102
Query: 74 NHSMLNGKV-IRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVV 132
NH ++ +V I+ R +FV + SVD +E F ++G L +
Sbjct: 103 NHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGE-LKEHQI 161
Query: 133 MAD--DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
M D G+S+G+GFV +ESE+ + + K N ++ Q+ +
Sbjct: 162 MRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEI 203
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
+++ L + T A + F +G+I I KD + G +GFGFV Y + + ++
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD- 102
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
N +G ++ ++ R + ++ F+ K+ I+V I +V D+E +
Sbjct: 103 NHIIIGKQV----EIKRTIPRGSMSSNDFKTKK-----------IFVGGIPSSVDDDEFK 147
Query: 312 DHFSACGSITSAKVMKDE-KGISKGFGFVCFST 343
+ F G + ++M+D G S+GFGFV + +
Sbjct: 148 EFFMQFGELKEHQIMRDHSTGRSRGFGFVTYES 180
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 21/180 (11%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + + +E LK+ FS +G ++ ++K++ G +GFGFV + N D +AL
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR-- 65
Query: 252 NGSQLGSKILYVARAQKKAE-RERILNHQFEEKRKEQI---LKYKGSN--------IYVK 299
+ + K + V +A +K E ++ + QF E++ +Q+ L+ SN I+V
Sbjct: 66 DTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVG 125
Query: 300 NIDDNVSDEELRDHFSACGSITSAKVMKDEKGIS---KGFGFVCFSTPEEANKAVNT-FH 355
+ N ++EE + +F G T VM D G++ +GFGFV + + + + + FH
Sbjct: 126 GLSSNTTEEEFKSYFERFGRTTDVVVMHD--GVTNRPRGFGFVTYDSEDSVEVVMQSNFH 183
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 93/182 (51%), Gaps = 10/182 (5%)
Query: 80 GKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADD--- 136
G +R S+ D I ++V ++++ + ++F+KYGN+ +++++ D
Sbjct: 90 GSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNV--TEIILPKDKMT 147
Query: 137 GKSKGYGFVQFESEESANAAIEKLNGS-TINDKQIYVG-RFVK-KSERILPGPDASYTN- 192
G+ Y F++++ E NAAI L T + + V RF + + ERI P N
Sbjct: 148 GERAAYCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNP 207
Query: 193 -LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
LY++ L+ T+ + E FS +G I + ++ D+ + +G+ FV + + A A++A+
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 252 NG 253
NG
Sbjct: 268 NG 269
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 27/211 (12%)
Query: 177 KKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGF 235
++S+ D S LY+ + TE +++ F +G + + + KD+ G + F
Sbjct: 96 RRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCF 155
Query: 236 VNYENPDDAKRALEAMN------GSQLGSKILYVARAQKKAERERI--LNHQFEEKRKEQ 287
+ Y+ ++ A+ A+ G L K+ + +AERERI Q + K
Sbjct: 156 IKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFA-----EAERERIGFAPVQLPDNPK-- 208
Query: 288 ILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEA 347
+YV+ ++ + E+ + FS G I + D+ I +G+ FV FS E A
Sbjct: 209 --------LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMA 260
Query: 348 NKAVNTFHG-FMFHG--KPLYVALAQRKEDR 375
A+ +G F G +PL V A K+ R
Sbjct: 261 LAAIKALNGLFTIRGSDQPLIVRFADPKKPR 291
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 21/164 (12%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYV + ++ + F ++ N+ + + +D TG Y ++ + ++ AI
Sbjct: 112 LYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAAL 171
Query: 74 NH------SMLNGKVIRVLWSRRD---------PDVRKSCIGNVFVKNLAESVDSSGLEE 118
ML KV R + R+ PD K ++V+ L + + E
Sbjct: 172 TEQFTFPGEMLPVKV-RFAEAERERIGFAPVQLPDNPK-----LYVRCLNKQTTKMEVNE 225
Query: 119 IFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLNG 162
+F +YG I + + D +GY FVQF +E A AAI+ LNG
Sbjct: 226 VFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNG 269
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 7/174 (4%)
Query: 100 GNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAI 157
G +FV ++ + F K+G ++ S V+M D G +G+GFV F A +
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDS-VIMTDRITGNPRGFGFVTFADSAVAEKVL 124
Query: 158 EKLNGSTINDKQIYVGRFVKKSERILPGPDASYTN-LYMKNLDLDITEALLKEKFSSFGK 216
E+ + I+D+++ + R + + ++ S T +++ L + E LK F +G
Sbjct: 125 EEDH--VIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGD 182
Query: 217 IVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
I+ I D + G S+GFGFV ++ D R +LG K + + RA+ K
Sbjct: 183 IIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 12/183 (6%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VG + + + + F +F + + D TG +G+V F A + +E +
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE-E 126
Query: 74 NHSMLNGKV-IRVLWSRRDPDVRKSCIG---NVFVKNLAESVDSSGLEEIFKKYGNILSS 129
+H + + KV ++ R D D + +FV L ++ L+ F YG+I+
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEH 186
Query: 130 KVVMAD--DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPD 187
+ +M D G+S+G+GFV F++E+S + + DKQ+ +K++E G D
Sbjct: 187 Q-IMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVE----IKRAEPKRTGRD 241
Query: 188 ASY 190
S+
Sbjct: 242 NSF 244
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + + T F FG++V I D G +GFGFV + + A++ LE
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEED 127
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+ +K + +R L ++ + + K + I+V + + ++EL+
Sbjct: 128 H-----------VIDDRKVDLKRTLPRGDKDTDIKAVSKTR--KIFVGGLPPLLEEDELK 174
Query: 312 DHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANK 349
++F G I ++M D G S+GFGFV F T + ++
Sbjct: 175 NYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDR 213
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D + +L + F ++ +L + RD +TGR+ +G++ F P A + I K
Sbjct: 14 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 73
Query: 74 NHSMLNGKVIRV--LWSRRDPDVRK-----------SCIGN--------VFVKNLAESVD 112
+ +++G+ + R D V K S GN +FV L S+
Sbjct: 74 H--IIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 131
Query: 113 SSGLEEIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGSTINDKQI 170
+ + F ++G I + VVM D + +G+GF+ F+SEES + + K +N K +
Sbjct: 132 EAEFKNYFDQFGTI-ADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTF-HELNGKMV 189
Query: 171 YVGRFVKK 178
V R V K
Sbjct: 190 EVKRAVPK 197
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 97 SCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESAN 154
S +G +F+ ++ D L+E F KYG+++ + V+M D G+++G+GF+ F A
Sbjct: 9 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEA-VIMRDRTTGRARGFGFIVFADPSVAE 67
Query: 155 AAIEK---LNGSTI-------NDKQIYVGRFVKKSERILP-----GPDASYTNLYMKNLD 199
I ++G T+ D Q + R I P G A +++ L
Sbjct: 68 RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLP 127
Query: 200 LDITEALLKEKFSSFGKIVSLAISKDENGMS-KGFGFVNYENPDDAKRALEAMNGSQLGS 258
ITEA K F FG I + + D N +GFGF+ +++ + L +L
Sbjct: 128 SSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTF-HELNG 186
Query: 259 KILYVARAQKK 269
K++ V RA K
Sbjct: 187 KMVEVKRAVPK 197
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 8/187 (4%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRAL--- 248
L++ + D E L+E F +G +V I +D G ++GFGF+ + +P A+R +
Sbjct: 14 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 73
Query: 249 EAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
++G + +K Q+ +R H + I+V + ++++
Sbjct: 74 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEA 133
Query: 309 ELRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN-TFHGFMFHGKPLYV 366
E +++F G+I VM D +GFGF+ F + E + ++ TFH +GK + V
Sbjct: 134 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFH--ELNGKMVEV 191
Query: 367 ALAQRKE 373
A KE
Sbjct: 192 KRAVPKE 198
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 7/184 (3%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E LKE FSSFG+++ I KD G ++GFGFV + +P A+ +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+ + +++ +A + ++ + + + I+V + +V++ + +
Sbjct: 68 H--NIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 312 DHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKA-VNTFHGFMFHGKPLYVALA 369
+F G+ T VM D +GFGF+ + + E K + TFH +GK + V A
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFH--ELNGKMVEVKRA 183
Query: 370 QRKE 373
KE
Sbjct: 184 VPKE 187
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 30/197 (15%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D ++ +L + F+ F + + +D +TGR+ +G+V F P A+ I +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP--AVAEIVIT 65
Query: 74 NHSMLNGKVIRV----------LWSRRDPDVRKSCIGN------VFVKNLAESVDSSGLE 117
++G+++ + +R + + G +FV L SV S +
Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 118 EIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGST---INDKQIYV 172
F+++G + VVM D + +G+GF+ ++SEE A+EK+ T +N K + V
Sbjct: 126 TYFEQFG-TTTDVVVMYDHNTQRPRGFGFITYDSEE----AVEKVLLKTFHELNGKMVEV 180
Query: 173 GRFVKKSERILPGPDAS 189
R V K + PGP S
Sbjct: 181 KRAVPK--ELSPGPSRS 195
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 15/183 (8%)
Query: 100 GNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAI 157
G +F+ ++ + L+E F +G ++ + V++ D G+++G+GFV F A I
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 158 EK---LNGSTI-------NDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALL 207
+ ++G + D Q V R S + PG +++ L +TE+
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 208 KEKFSSFGKIVSLAISKDENGM-SKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARA 266
K F FG + + D N +GFGF+ Y++ + ++ L +L K++ V RA
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTF-HELNGKMVEVKRA 183
Query: 267 QKK 269
K
Sbjct: 184 VPK 186
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D + +L + F ++ +L + RD +TGR+ +G++ F P A + I K
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 74 NHSMLNGKVIRV--LWSRRDPDVRK-----------SCIGN--------VFVKNLAESVD 112
+ +++G+ + R D V K S GN +FV L S+
Sbjct: 77 H--IIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 134
Query: 113 SSGLEEIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGSTINDKQI 170
+ + F ++G I + VVM D + +G+GF+ F+SEES + + K +N K +
Sbjct: 135 EAEFKNYFDQFGTI-ADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTF-HELNGKMV 192
Query: 171 YVGRFVKK 178
V R V K
Sbjct: 193 EVKRAVPK 200
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 97 SCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESAN 154
S +G +F+ ++ D L+E F KYG+++ + V+M D G+++G+GF+ F A
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEA-VIMRDRTTGRARGFGFIVFADPSVAE 70
Query: 155 AAIEK---LNGSTI-------NDKQIYVGRFVKKSERILP-----GPDASYTNLYMKNLD 199
I ++G T+ D Q + R I P G A +++ L
Sbjct: 71 RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLP 130
Query: 200 LDITEALLKEKFSSFGKIVSLAISKDENGM-SKGFGFVNYENPDDAKRALEAMNGSQLGS 258
ITEA K F FG I + + D N +GFGF+ +++ + L +L
Sbjct: 131 SSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTF-HELNG 189
Query: 259 KILYVARAQKK 269
K++ V RA K
Sbjct: 190 KMVEVKRAVPK 200
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 8/187 (4%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRAL--- 248
L++ + D E L+E F +G +V I +D G ++GFGF+ + +P A+R +
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 249 EAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
++G + +K Q+ +R H + I+V + ++++
Sbjct: 77 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEA 136
Query: 309 ELRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN-TFHGFMFHGKPLYV 366
E +++F G+I VM D +GFGF+ F + E + ++ TFH +GK + V
Sbjct: 137 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFH--ELNGKMVEV 194
Query: 367 ALAQRKE 373
A KE
Sbjct: 195 KRAVPKE 201
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 7/184 (3%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E LKE FSSFG+++ I KD G ++GFGFV + +P A+ +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+ + +++ +A + ++ + + + I+V + +V++ + +
Sbjct: 68 H--NIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 312 DHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKA-VNTFHGFMFHGKPLYVALA 369
+F G+ T VM D +GFGF+ + + E K + TFH +GK + V A
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFH--ELNGKMVEVKRA 183
Query: 370 QRKE 373
KE
Sbjct: 184 VPKE 187
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 30/197 (15%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D ++ +L + F+ F + + +D +TGR+ +G+V F P A+ I +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP--AVAEIVIT 65
Query: 74 NHSMLNGKVIRV----------LWSRRDPDVRKSCIGN------VFVKNLAESVDSSGLE 117
++G+++ + +R + + G +FV L SV S +
Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 118 EIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGST---INDKQIYV 172
F+++G + VVM D + +G+GF+ ++SEE A+EK+ T +N K + V
Sbjct: 126 TYFEQFG-TTTDVVVMYDHNTQRPRGFGFITYDSEE----AVEKVLLKTFHELNGKMVEV 180
Query: 173 GRFVKKSERILPGPDAS 189
R V K + PGP S
Sbjct: 181 KRAVPK--ELSPGPSRS 195
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 15/187 (8%)
Query: 96 KSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESA 153
+S G +F+ ++ + L+E F +G ++ + V++ D G+++G+GFV F A
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVA 60
Query: 154 NAAIEK---LNGSTI-------NDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDIT 203
I + ++G + D Q V R S + PG +++ L +T
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 204 EALLKEKFSSFGKIVSLAISKDENGM-SKGFGFVNYENPDDAKRALEAMNGSQLGSKILY 262
E+ K F FG + + D N +GFGF+ Y++ + ++ L +L K++
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTF-HELNGKMVE 179
Query: 263 VARAQKK 269
V RA K
Sbjct: 180 VKRAVPK 186
>AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
| chr3:18103272-18110216 FORWARD LENGTH=881
Length = 881
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 86/368 (23%), Positives = 146/368 (39%), Gaps = 97/368 (26%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYV L D + D F + + SV++ + G L G+V F S +A +A+++K
Sbjct: 566 LYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKRN-GLRLSTGFVEFASANEAKKALDMK 624
Query: 74 NHSMLNG-KVIRVLWSRRD-----------------------PDVRKSCIGNVFVKNLAE 109
N L G K+I + S + P + +S + A
Sbjct: 625 NGEYLCGNKLILGMASCENIAQPKYEDYIQQESLPIEEEETPPKIVQSGANTLGCSIQAA 684
Query: 110 SVDSSGLE-------EIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLNG 162
+ + + + F G ++S +++++ + K GYGFV+F S AN A+EK NG
Sbjct: 685 AFSMTDILSFHFYRLDFFNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNG 744
Query: 163 STINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAI 222
++D +I++G V K+ P P NL K L + LL++ SL I
Sbjct: 745 EYLHDHKIFLG--VAKTA---PYPPRIKYNLAEK---LWYEDYLLRD---------SLLI 787
Query: 223 SKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEE 282
+DE E D+ +EA+ L K+L +A ++ + I+
Sbjct: 788 EEDE----------TVEGLDETPSCVEAV---ALREKVLIIAHVPRRTKISHII------ 828
Query: 283 KRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFS 342
D F G + + +++ D+KG G GFV F+
Sbjct: 829 -----------------------------DFFKDAGQVVNVRLIVDQKGKPFGRGFVEFT 859
Query: 343 TPEEANKA 350
+ +EA K
Sbjct: 860 SADEAKKV 867
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 15/194 (7%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
LY+ L D + + F G++VS+ ++ NG+ GFV + + ++AK+AL+
Sbjct: 565 TLYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMK 624
Query: 252 NGSQL-GSK-ILYVARAQKKAE--RERILNHQ---FEEKRKEQILKYKGSNIYVKNID-- 302
NG L G+K IL +A + A+ E + + EE+ + G+N +I
Sbjct: 625 NGEYLCGNKLILGMASCENIAQPKYEDYIQQESLPIEEEETPPKIVQSGANTLGCSIQAA 684
Query: 303 -----DNVSDEELR-DHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG 356
D +S R D F+ G + S +++ + G+GFV F++P AN A+ +G
Sbjct: 685 AFSMTDILSFHFYRLDFFNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNG 744
Query: 357 FMFHGKPLYVALAQ 370
H +++ +A+
Sbjct: 745 EYLHDHKIFLGVAK 758
>AT4G25500.4 | Symbols: RSP35, RS40, At-RS40 | arginine/serine-rich
splicing factor 35 | chr4:13025168-13027243 FORWARD
LENGTH=350
Length = 350
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
VF N LE +F+KYG + +V M G+ FV E E A AI L+
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKV--ERVDM-----KAGFAFVYMEDERDAEDAIRALD 56
Query: 162 GSTINDKQIYVGRFVKKSERILPGPDASYT--------------NLYMKNLDLDITEAL- 206
K + KSER G D L++ N D D T
Sbjct: 57 RFEFGRKGRRLRVEWTKSER---GGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRD 113
Query: 207 LKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARA 266
L++ F +GKIV++ I ++ F F+ YE +DA RAL+A N S+L K++ V A
Sbjct: 114 LEKHFEPYGKIVNVRIRRN-------FAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166
Query: 267 QK 268
K
Sbjct: 167 VK 168
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 16/183 (8%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMN 252
++ N + D E L+ F +GK+ + M GF FV E+ DA+ A+ A++
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERV-------DMKAGFAFVYMEDERDAEDAIRALD 56
Query: 253 GSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNID-DNVSDEELR 311
+ G K + K+ER +R ++ ++V N D DN +L
Sbjct: 57 RFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMR-PSKTLFVINFDADNTRTRDLE 115
Query: 312 DHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQR 371
HF G I + + I + F F+ + E+A +A++ + K + V A +
Sbjct: 116 KHFEPYGKIVNVR-------IRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVK 168
Query: 372 KED 374
+D
Sbjct: 169 DDD 171
>AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,
At-RS40 | arginine/serine-rich splicing factor 35 |
chr4:13025168-13027243 FORWARD LENGTH=350
Length = 350
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
VF N LE +F+KYG + +V M G+ FV E E A AI L+
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKV--ERVDM-----KAGFAFVYMEDERDAEDAIRALD 56
Query: 162 GSTINDKQIYVGRFVKKSERILPGPDASYT--------------NLYMKNLDLDITEAL- 206
K + KSER G D L++ N D D T
Sbjct: 57 RFEFGRKGRRLRVEWTKSER---GGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRD 113
Query: 207 LKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARA 266
L++ F +GKIV++ I ++ F F+ YE +DA RAL+A N S+L K++ V A
Sbjct: 114 LEKHFEPYGKIVNVRIRRN-------FAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166
Query: 267 QK 268
K
Sbjct: 167 VK 168
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 16/183 (8%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMN 252
++ N + D E L+ F +GK+ + M GF FV E+ DA+ A+ A++
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERV-------DMKAGFAFVYMEDERDAEDAIRALD 56
Query: 253 GSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNID-DNVSDEELR 311
+ G K + K+ER +R ++ ++V N D DN +L
Sbjct: 57 RFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMR-PSKTLFVINFDADNTRTRDLE 115
Query: 312 DHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQR 371
HF G I + + I + F F+ + E+A +A++ + K + V A +
Sbjct: 116 KHFEPYGKIVNVR-------IRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVK 168
Query: 372 KED 374
+D
Sbjct: 169 DDD 171
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 23/255 (9%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
++VG L S+ L F + VR+ ++ T +S ++ F + + A +A++
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
M+NGK V S +D D +FV N+ + L E K YG + +
Sbjct: 276 KSPMINGKKCGVTAS-QDNDT-------LFVGNICKIWTPEALREKLKHYGVENMDDITL 327
Query: 134 ADDGK----SKGYGFVQFESEESANAAIEKLN------GSTINDKQIYVGRFVKKSERIL 183
+D ++GY F++F S A A ++L G K + F+ + I+
Sbjct: 328 VEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIM 387
Query: 184 PGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPD 242
A +++ L E +++ +GK+ + ++++ + K FGFV ++ +
Sbjct: 388 ----AQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHE 443
Query: 243 DAKRALEAMNGSQLG 257
A + +N S+LG
Sbjct: 444 AAVSCAKFINNSELG 458
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 112/254 (44%), Gaps = 32/254 (12%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+FV +L + L+++F G + +++ KSKG F++F + E A A+++L
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTN--LYMKNLDLDITEALLKEKFSSFG--K 216
IN K+ G AS N L++ N+ T L+EK +G
Sbjct: 276 KSPMINGKKC--------------GVTASQDNDTLFVGNICKIWTPEALREKLKHYGVEN 321
Query: 217 IVSLAISKDENG--MSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERER 274
+ + + +D N M++G+ F+ + + DA A + + + + V + K + +
Sbjct: 322 MDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDV---MFGVEKPAKVSFTDS 378
Query: 275 ILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGIS 333
L+ E++ Q+ I++ + + ++E +RD G + ++ ++
Sbjct: 379 FLD--LEDEIMAQV-----KTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARR 431
Query: 334 KGFGFVCFSTPEEA 347
K FGFV F T E A
Sbjct: 432 KDFGFVTFDTHEAA 445
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 17/205 (8%)
Query: 177 KKSERILP--GPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL----------AISK 224
KK +++ P P+ ++ + L TE + E FS GK+ I
Sbjct: 195 KKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMD 254
Query: 225 DENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKR 284
+ S+G G+V + + A+ A++G L + + V ++ AE+ + +
Sbjct: 255 RISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVMVKPSE--AEKNLVQSTTAAAGA 311
Query: 285 KEQILKYKGS--NIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFS 342
+ Y G +YV N+ N+S+++LR F + GS+ +V +DE G+ KGFGFV F+
Sbjct: 312 GGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFA 371
Query: 343 TPEEANKAVNTFHGFMFHGKPLYVA 367
E+A A+N G+ + V+
Sbjct: 372 RLEDARNALNLNGQLEIAGRAIKVS 396
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 21/150 (14%)
Query: 138 KSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSE---------------RI 182
+S+G G+V+F S AI L+G + + + VK SE
Sbjct: 259 RSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPV----MVKPSEAEKNLVQSTTAAAGAGG 313
Query: 183 LPGP-DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENP 241
+ GP LY+ NL ++++E L++ F SFG + + + +DE G+ KGFGFV +
Sbjct: 314 MLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARL 373
Query: 242 DDAKRALEAMNGSQLGSKILYVARAQKKAE 271
+DA+ AL ++ + + V+ + E
Sbjct: 374 EDARNALNLNGQLEIAGRAIKVSAVTDQTE 403
>AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 |
chr3:4849788-4851601 FORWARD LENGTH=327
Length = 327
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 9/182 (4%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKR 246
D+ +Y+ ++D +TE L FS+ G++V I D + + + F FV + + A
Sbjct: 137 DSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR-FAFVEFADDQGAHE 195
Query: 247 ALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVS 306
AL ++ G+ LG Y R +N F R E + IY NID VS
Sbjct: 196 AL-SLGGTMLG---FYPVRVLPSKTAILPVNPTF-LPRSEDEREMCTRTIYCTNIDKKVS 250
Query: 307 DEELRDHF-SACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLY 365
++R+ F SACG +T +++ D+ S FV F+ + A A+N G + +P+
Sbjct: 251 QADVRNFFESACGEVTRLRLLGDQLH-STRIAFVEFALADSALSALNC-SGMVVGSQPIR 308
Query: 366 VA 367
V+
Sbjct: 309 VS 310
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 290 KYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEAN 348
+Y +N+Y+ + + D+ L + FS+ G I AKV+KD G+SKG+GFV ++ + AN
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 349 KAVNTFHGFMFHGKPLYVALA 369
AV +G+ F G+ L V +A
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIA 556
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
TNLY+ L + + L FSSFG+IV + KD G+SKG+GFV Y + A A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 250 AMNGSQLGSKILYVARAQK 268
AMNG + + L V A K
Sbjct: 540 AMNGYRFEGRTLAVRIAGK 558
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 290 KYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEAN 348
+Y +N+Y+ + + D+ L + FS+ G I AKV+KD G+SKG+GFV ++ + AN
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 349 KAVNTFHGFMFHGKPLYVALA 369
AV +G+ F G+ L V +A
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIA 556
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
TNLY+ L + + L FSSFG+IV + KD G+SKG+GFV Y + A A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 250 AMNGSQLGSKILYVARAQK 268
AMNG + + L V A K
Sbjct: 540 AMNGYRFEGRTLAVRIAGK 558
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 290 KYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEAN 348
+Y +N+Y+ + + D+ L + FS+ G I AKV+KD G+SKG+GFV ++ + AN
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 349 KAVNTFHGFMFHGKPLYVALA 369
AV +G+ F G+ L V +A
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIA 556
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
TNLY+ L + + L FSSFG+IV + KD G+SKG+GFV Y + A A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 250 AMNGSQLGSKILYVARAQK 268
AMNG + + L V A K
Sbjct: 540 AMNGYRFEGRTLAVRIAGK 558
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LY+G L P + L DAF+ F + RV + TGRS YG+VNF+S A AI
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 74 NHSMLNGKVIRV 85
N LNG I V
Sbjct: 93 NGQELNGFNISV 104
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEKL 160
+++ L+ D L++ F + + ++V+ G+S+GYGFV F SE+SAN+AI +
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL 220
NG +N I V V K LP +LD I EA KE K++S
Sbjct: 93 NGQELNGFNISVN--VAKDWPSLP-----------LSLDESIEEAEKKE-----NKMMSR 134
Query: 221 AISKD 225
++ KD
Sbjct: 135 SVWKD 139
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 289 LKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEA 347
L+Y + +Y+ + + L+D FS+ +T A+VM ++ G S+G+GFV F + + A
Sbjct: 26 LRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSA 85
Query: 348 NKAVNTFHGFMFHGKPLYVALAQ 370
N A++ +G +G + V +A+
Sbjct: 86 NSAISAMNGQELNGFNISVNVAK 108
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
T LY+ L E LK+ FSSF + + ++ G S+G+GFVN+ + D A A+
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 250 AMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQ 287
AMNG +L + V A+ L+ EE K++
Sbjct: 91 AMNGQELNGFNISVNVAKDWPSLPLSLDESIEEAEKKE 128
>AT2G46610.1 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr2:19136769-19138492 REVERSE
LENGTH=250
Length = 250
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 27/187 (14%)
Query: 99 IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIE 158
+ +V+V N S LE +F K+G + +V M GY FV FE E A AI
Sbjct: 1 MRHVYVGNFDYDTRHSDLERLFSKFGRV--KRVDM-----KSGYAFVYFEDERDAEDAIR 53
Query: 159 KLNGSTIN--DKQIYVGRFVK--KSERILPGPDASYTN------LYMKNLD-LDITEALL 207
+ + +T +++ V + K + ER P + +N L++ N D + E +
Sbjct: 54 RTDNTTFGYGRRKLSVE-WAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDM 112
Query: 208 KEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQ 267
+ F +GK++++ M + F FV + +DA +AL++ + S+L K++ V A
Sbjct: 113 ERHFEPYGKVLNVR-------MRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYAL 165
Query: 268 KKA-ERE 273
++A ERE
Sbjct: 166 REAGERE 172
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 30/195 (15%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
++Y+ N D D + L+ FS FG++ + M G+ FV +E+ DA+ A+
Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRVKRV-------DMKSGYAFVYFEDERDAEDAIRRT 55
Query: 252 NGSQLG--SKILYVARAQK-KAERERILNHQ-FEEKRKEQILKYKGSNIYVKNIDD-NVS 306
+ + G + L V A+ + ER + + + +R + L +V N D
Sbjct: 56 DNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTL-------FVINFDPIRTR 108
Query: 307 DEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
+ ++ HF G + + ++ ++ F FV F+T E+A KA+++ H K + V
Sbjct: 109 ERDMERHFEPYGKVLNVRMRRN-------FAFVQFATQEDATKALDSTHNSKLLDKVVSV 161
Query: 367 ALAQR----KEDRQA 377
A R +EDR A
Sbjct: 162 EYALREAGEREDRYA 176
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+FV L+ D S L++ F +G + + V+ + G+S+G+GFV F E+SAN AI+++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 161 NGSTINDKQIYVGRFVKKS 179
+G +N +QI V ++S
Sbjct: 97 DGKELNGRQIRVNLATERS 115
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 289 LKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEA 347
L+Y S ++V + D L+ F++ G +T A V+ D E G S+GFGFV FS + A
Sbjct: 30 LRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSA 89
Query: 348 NKAVNTFHGFMFHGKPLYVALAQRK 372
N A+ G +G+ + V LA +
Sbjct: 90 NNAIKEMDGKELNGRQIRVNLATER 114
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE 249
+ L++ L ++ LK+ F+SFG++ + D E G S+GFGFV++ D A A++
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 250 AMNGSQLGSKILYVARAQKKAERER 274
M+G +L + + V A +++ R
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAPR 119
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+FV L+ D S L++ F +G + + V+ + G+S+G+GFV F E+SAN AI+++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 161 NGSTINDKQIYVGRFVKKS 179
+G +N +QI V ++S
Sbjct: 97 DGKELNGRQIRVNLATERS 115
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 289 LKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEA 347
L+Y S ++V + D L+ F++ G +T A V+ D E G S+GFGFV FS + A
Sbjct: 30 LRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSA 89
Query: 348 NKAVNTFHGFMFHGKPLYVALAQRK 372
N A+ G +G+ + V LA +
Sbjct: 90 NNAIKEMDGKELNGRQIRVNLATER 114
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE 249
+ L++ L ++ LK+ F+SFG++ + D E G S+GFGFV++ D A A++
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 250 AMNGSQLGSKILYVARAQKKAERER 274
M+G +L + + V A +++ R
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAPR 119
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 293 GSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAV 351
G+N+++ NI D+EL F G + SAKV D+ GISK FGF+ + + A A+
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 388
Query: 352 NTFHGFMFHGKPLYVAL 368
NT +G GK L V L
Sbjct: 389 NTMNGCQLSGKKLKVQL 405
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSST--GRSLCYGYVNFLSPQDAMQAIE 71
L+VG + +++ QL F EF + V + ++ +T R C+ + + +DA + I
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCF--LTCPTREDADKVIN 71
Query: 72 -VKNHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSK 130
N L G + D ++ + +FV L ++V + ++ +F +YG I +
Sbjct: 72 SFHNKKTLPGASSPLQVKYADGELER-LEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQ 130
Query: 131 VVMADDGKSKGYGFVQFESEESANAAIEKLNGSTI 165
++ SKG F+++ES+E A AA+E LNG I
Sbjct: 131 ILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHI 165
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEA 250
NL++ N+ + + L F FGK++S + D+ G+SK FGF++Y++ A+ A+
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 390
Query: 251 MNGSQLGSKILYV 263
MNG QL K L V
Sbjct: 391 MNGCQLSGKKLKV 403
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 32/245 (13%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMS-KGFGFVNYENPDDAKRALEAM 251
L++ + +TE L F F + + I K++ + +G F+ +DA + + +
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73
Query: 252 NGSQL---GSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
+ + S L V A + ER L H+ ++V + NVS+
Sbjct: 74 HNKKTLPGASSPLQVKYADGELER---LEHK----------------LFVGMLPKNVSET 114
Query: 309 ELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG-FMFHGK--PLY 365
E++ FS G+I ++++ SKG F+ + + E+A A+ +G + G PL
Sbjct: 115 EVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLI 174
Query: 366 VALAQRKEDRQAQLQLQYAQKIAGL--AGPST-AIIPGGYPPFYYTATGVVPHVPHRAGL 422
V A +++RQA+ L+ ++ L PS +P Y P Y G HVP G
Sbjct: 175 VKWADTEKERQARRLLKVQSHVSRLDPQNPSMFGALPMSYVPPY---NGYGYHVPGTYGY 231
Query: 423 MYQPL 427
M P+
Sbjct: 232 MLPPI 236
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+F+ +A S+D L E F KYG ++ ++V++ + G+S+G+GFV F S E+A++AI+ L
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 161 NGSTINDKQIYV 172
+G ++ + + V
Sbjct: 102 DGRDLHGRVVKV 113
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 293 GSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAV 351
G+N+++ NI D+EL F G + SAKV D+ GISK FGF+ + + A A+
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 397
Query: 352 NTFHGFMFHGKPLYVAL 368
NT +G GK L V L
Sbjct: 398 NTMNGCQLSGKKLKVQL 414
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 23/245 (9%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMS-KGFGFVNYENPDDAKRALEAM 251
L++ + +TE L F F + + I K++ + +G F+ +DA + + +
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73
Query: 252 NGSQL---GSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
+ + S L V A + ER +L+ + K ++V + NVS+
Sbjct: 74 HNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHK----------LFVGMLPKNVSET 123
Query: 309 ELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG-FMFHGK--PLY 365
E++ FS G+I ++++ SKG F+ + + E+A A+ +G + G PL
Sbjct: 124 EVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLI 183
Query: 366 VALAQRKEDRQAQLQLQYAQKIAGL--AGPST-AIIPGGYPPFYYTATGVVPHVPHRAGL 422
V A +++RQA+ L+ ++ L PS +P Y P Y G HVP G
Sbjct: 184 VKWADTEKERQARRLLKVQSHVSRLDPQNPSMFGALPMSYVPPY---NGYGYHVPGTYGY 240
Query: 423 MYQPL 427
M P+
Sbjct: 241 MLPPI 245
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSST--GRSLCYGYVNFLSPQDAMQAIE 71
L+VG + +++ QL F EF + V + ++ +T R C+ + + +DA + I
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCF--LTCPTREDADKVIN 71
Query: 72 -VKNHSMLNGKVIRVLWSRRDPDVRK----SCIGN----VFVKNLAESVDSSGLEEIFKK 122
N L G + D ++ + C N +FV L ++V + ++ +F +
Sbjct: 72 SFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSE 131
Query: 123 YGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLNGSTI 165
YG I +++ SKG F+++ES+E A AA+E LNG I
Sbjct: 132 YGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHI 174
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEA 250
NL++ N+ + + L F FGK++S + D+ G+SK FGF++Y++ A+ A+
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 399
Query: 251 MNGSQLGSKILYV 263
MNG QL K L V
Sbjct: 400 MNGCQLSGKKLKV 412
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ L TE ++E SFG + + KD E G SKG+ F Y++P
Sbjct: 371 LEGPD----RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDP 426
Query: 242 DDAKRALEAMNGSQLGSKILYVARA-----QKKAERERILNHQFEEKRKEQIL-KYKGSN 295
A A+NG ++G K L V RA Q K E+E +L + ++ ++++ + G+
Sbjct: 427 SVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTP 486
Query: 296 IYVKNIDDNVSDEELRD 312
+ + V+ ++LRD
Sbjct: 487 TKIVCLTQVVTADDLRD 503
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 93 DVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEE 151
DV C FV LA + D LE F +YG+++ SK++ + G+S+G+GFV F+ E+
Sbjct: 5 DVEYRC----FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 152 SANAAIEKLNGSTINDKQIYV 172
+ AIE +NG ++ + I V
Sbjct: 61 AMKDAIEGMNGQDLDGRSITV 81
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 93 DVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEE 151
DV C FV LA + D LE F +YG+++ SK++ + G+S+G+GFV F+ E+
Sbjct: 5 DVEYRC----FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 152 SANAAIEKLNGSTINDKQIYV 172
+ AIE +NG ++ + I V
Sbjct: 61 AMKDAIEGMNGQDLDGRSITV 81
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 25/183 (13%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKV-VMADDGKSKGYGFVQFESEESANAAIEK 159
+F NL+ +++ + +E FK+ G ++ + DDG +G+G V+F S E A A+E
Sbjct: 298 TLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE- 356
Query: 160 LNGSTINDKQIYVGRFVKKSER-----ILP--------GPDASYTNLYMKNLDLDITEA- 205
+G + ++I + ++ ER P G +++K D ++E
Sbjct: 357 FHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDD 416
Query: 206 ---LLKEKFSSFGKI--VSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKI 260
L+E FSS G+I VS+ I +D G SKG ++ + + ++ALE +NGS +G
Sbjct: 417 IKNTLREHFSSCGEIKNVSVPIDRD-TGNSKGIAYLEFS--EGKEKALE-LNGSDMGGGF 472
Query: 261 LYV 263
V
Sbjct: 473 YLV 475
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEA 250
L+ NL +I A ++ F G++V + S + ++G +GFG V + + ++A++ALE
Sbjct: 298 TLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE- 356
Query: 251 MNGSQLGSKILYVARAQKKAER-ERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEE 309
+G L + + + AQ++ ER ER + I+VK D ++S+++
Sbjct: 357 FHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDD 416
Query: 310 ----LRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEE 346
LR+HFS+CG I + V D + G SKG ++ FS +E
Sbjct: 417 IKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKE 458
>AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr5:21131081-21133318 FORWARD LENGTH=357
Length = 357
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 74/181 (40%), Gaps = 31/181 (17%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
VF N S LE +F+KYG + +V M G+ FV E E A AI L+
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKV--ERVDM-----KAGFAFVYMEDERDAEDAIRALD 56
Query: 162 G-------------STINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEAL-L 207
T ND+ + L++ N D T L
Sbjct: 57 RFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSG---LRPSKTLFVINFDAQNTRTRDL 113
Query: 208 KEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQ 267
+ F +GKIV++ I ++ F F+ YE +DA RAL+A N S+L K++ V A
Sbjct: 114 ERHFEPYGKIVNVRIRRN-------FAFIQYEAQEDATRALDATNSSKLMDKVISVEYAV 166
Query: 268 K 268
K
Sbjct: 167 K 167
>AT5G52040.1 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr5:21131081-21133318 FORWARD LENGTH=356
Length = 356
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 74/181 (40%), Gaps = 31/181 (17%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
VF N S LE +F+KYG + +V M G+ FV E E A AI L+
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKV--ERVDM-----KAGFAFVYMEDERDAEDAIRALD 56
Query: 162 G-------------STINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEAL-L 207
T ND+ + L++ N D T L
Sbjct: 57 RFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSG---LRPSKTLFVINFDAQNTRTRDL 113
Query: 208 KEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQ 267
+ F +GKIV++ I ++ F F+ YE +DA RAL+A N S+L K++ V A
Sbjct: 114 ERHFEPYGKIVNVRIRRN-------FAFIQYEAQEDATRALDATNSSKLMDKVISVEYAV 166
Query: 268 K 268
K
Sbjct: 167 K 167
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
++V NL+ VD LE +F + G ++ ++V+ D G+SKG+GFV S + AI L
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 161 NGSTINDKQIYV 172
NG+ ++ +QI V
Sbjct: 340 NGADLDGRQIRV 351
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 296 IYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTF 354
+YV N+ V D L + F+ G + A+V+ D + G SKGFGFV S+ +E KA+N+
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 355 HGFMFHGKPLYVALAQRKEDR 375
+G G+ + V+ A+ + R
Sbjct: 340 NGADLDGRQIRVSEAEARPPR 360
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
LY+ NL + + L+ F+ GK+V + D ++G SKGFGFV + + ++A+ ++
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 252 NGSQLGSKILYVARAQKKAER 272
NG+ L + + V+ A+ + R
Sbjct: 340 NGADLDGRQIRVSEAEARPPR 360
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
++V NL+ VD LE +F + G ++ ++V+ D G+SKG+GFV S + AI L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 161 NGSTINDKQIYV 172
NG+ ++ +QI V
Sbjct: 319 NGADLDGRQIRV 330
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 296 IYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTF 354
+YV N+ V D L + F+ G + A+V+ D + G SKGFGFV S+ +E KA+N+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 355 HGFMFHGKPLYVALAQRKEDR 375
+G G+ + V+ A+ + R
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
LY+ NL + + L+ F+ GK+V + D ++G SKGFGFV + + ++A+ ++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 252 NGSQLGSKILYVARAQKKAER 272
NG+ L + + V+ A+ + R
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
++V NL+ VD LE +F + G ++ ++V+ D G+SKG+GFV S + AI L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 161 NGSTINDKQIYV 172
NG+ ++ +QI V
Sbjct: 319 NGADLDGRQIRV 330
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 296 IYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTF 354
+YV N+ V D L + F+ G + A+V+ D + G SKGFGFV S+ +E KA+N+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 355 HGFMFHGKPLYVALAQRKEDR 375
+G G+ + V+ A+ + R
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
LY+ NL + + L+ F+ GK+V + D ++G SKGFGFV + + ++A+ ++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 252 NGSQLGSKILYVARAQKKAER 272
NG+ L + + V+ A+ + R
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
++V NL+ VD LE +F + G ++ ++V+ D G+SKG+GFV S + AI L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 161 NGSTINDKQIYV 172
NG+ ++ +QI V
Sbjct: 319 NGADLDGRQIRV 330
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 296 IYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTF 354
+YV N+ V D L + F+ G + A+V+ D + G SKGFGFV S+ +E KA+N+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 355 HGFMFHGKPLYVALAQRKEDR 375
+G G+ + V+ A+ + R
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
LY+ NL + + L+ F+ GK+V + D ++G SKGFGFV + + ++A+ ++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 252 NGSQLGSKILYVARAQKKAER 272
NG+ L + + V+ A+ + R
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 246 RALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNV 305
RA+ + + +G + L+ + A R L+ Q E + + +N++V +
Sbjct: 12 RAVTEVASAPVGLRRLFCS----NASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRT 67
Query: 306 SDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPL 364
+ E LR F+ G + AKV+ D G SKGFGFV ++T E++ K + G G +
Sbjct: 68 TSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVI 127
Query: 365 YVALAQRKEDRQA 377
+ A+ +E Q+
Sbjct: 128 FAEYARPREQSQS 140
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
TNL++ L T L+ F+ FG++ + D +G SKGFGFV Y +D+ + +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 250 AMNGSQLGSKILYVARAQKK 269
M+G L +++ A+ +
Sbjct: 116 GMDGKFLDGWVIFAEYARPR 135
>AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
domain 12 | chr4:6557336-6559143 FORWARD LENGTH=336
Length = 336
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 9/177 (5%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
+Y+ ++D +TE L F FG++V I D N + + F F+ + + A+ AL +
Sbjct: 151 TVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLR-FAFIEFTDEVGARTALN-L 208
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+G+ LG Y + +N F R E + IY NID ++ +++
Sbjct: 209 SGTMLG---FYPVKVMPSKTAIAPVNPTF-LPRTEDEREMCARTIYCTNIDKKLTQTDIK 264
Query: 312 DHF-SACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVA 367
F S CG + +++ D ++ GFV F E A A+N G + P+ V+
Sbjct: 265 LFFESVCGEVYRLRLLGDYHHPTR-IGFVEFVMAESAIAALNC-SGVLLGSLPIRVS 319
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ L TE+ ++E SFG + + KD E G SKG+ F Y++
Sbjct: 355 LEGPD----RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDL 410
Query: 242 DDAKRALEAMNGSQLGSKILYVARAQ-----KKAERERILNHQFEEKRKEQILKYKGS-N 295
A A+NG ++G K L V RA +K E+E +L H ++ ++++ G+
Sbjct: 411 SVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVA 470
Query: 296 IYVKNIDDNVSDEELRD 312
V + V+++ELRD
Sbjct: 471 TTVVCLTQVVTEDELRD 487
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 36/182 (19%)
Query: 91 DPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFES 149
DP RK +FV L + L E FK+YG I K V GKSKGYGF+ ++S
Sbjct: 136 DPVHRK-----IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Query: 150 EESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGP---------------------DA 188
A A+++ Q +G + + GP +
Sbjct: 191 RSGARNALKQ--------PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEH 242
Query: 189 SYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRA 247
+ +Y+ N+ ++ L FS FG+I + D+ G KGF Y++ + AKRA
Sbjct: 243 TQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRA 302
Query: 248 LE 249
LE
Sbjct: 303 LE 304
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 36/182 (19%)
Query: 91 DPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFES 149
DP RK +FV L + L E FK+YG I K V GKSKGYGF+ ++S
Sbjct: 136 DPVHRK-----IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Query: 150 EESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGP---------------------DA 188
A A+++ Q +G + + GP +
Sbjct: 191 RSGARNALKQ--------PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEH 242
Query: 189 SYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRA 247
+ +Y+ N+ ++ L FS FG+I + D+ G KGF Y++ + AKRA
Sbjct: 243 TQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRA 302
Query: 248 LE 249
LE
Sbjct: 303 LE 304
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 36/182 (19%)
Query: 91 DPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFES 149
DP RK +FV L + L E FK+YG I K V GKSKGYGF+ ++S
Sbjct: 136 DPVHRK-----IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Query: 150 EESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGP---------------------DA 188
A A+++ Q +G + + GP +
Sbjct: 191 RSGARNALKQ--------PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEH 242
Query: 189 SYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRA 247
+ +Y+ N+ ++ L FS FG+I + D+ G KGF Y++ + AKRA
Sbjct: 243 TQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRA 302
Query: 248 LE 249
LE
Sbjct: 303 LE 304
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 36/182 (19%)
Query: 91 DPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFES 149
DP RK +FV L + L E FK+YG I K V GKSKGYGF+ ++S
Sbjct: 136 DPVHRK-----IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Query: 150 EESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGP---------------------DA 188
A A+++ Q +G + + GP +
Sbjct: 191 RSGARNALKQ--------PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEH 242
Query: 189 SYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRA 247
+ +Y+ N+ ++ L FS FG+I + D+ G KGF Y++ + AKRA
Sbjct: 243 TQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRA 302
Query: 248 LE 249
LE
Sbjct: 303 LE 304
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 36/182 (19%)
Query: 91 DPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFES 149
DP RK +FV L + L E FK+YG I K V GKSKGYGF+ ++S
Sbjct: 136 DPVHRK-----IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Query: 150 EESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGP---------------------DA 188
A A+++ Q +G + + GP +
Sbjct: 191 RSGARNALKQ--------PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEH 242
Query: 189 SYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRA 247
+ +Y+ N+ ++ L FS FG+I + D+ G KGF Y++ + AKRA
Sbjct: 243 TQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRA 302
Query: 248 LE 249
LE
Sbjct: 303 LE 304
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ L TE+ ++E SFG + + KD E G SKG+ F Y++
Sbjct: 355 LEGPD----RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDL 410
Query: 242 DDAKRALEAMNGSQLGSKILYVARAQ-----KKAERERILNHQFEEKRKEQILKYKGS-N 295
A A+NG ++G K L V RA +K E+E +L H ++ ++++ G+
Sbjct: 411 SVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVA 470
Query: 296 IYVKNIDDNVSDEELRD 312
V + V+++ELRD
Sbjct: 471 TTVVCLTQVVTEDELRD 487
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
V+V L + + +F YG++L+ K+V + K YGFV F + SA+ AIE ++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 162 GSTINDKQIYVGRFVKKSERILPGP 186
G +I + + V + R+ PGP
Sbjct: 69 GKSIGGRAVRVNDVTTRGGRMNPGP 93
>AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850077-17854205 FORWARD LENGTH=843
Length = 843
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 93/193 (48%), Gaps = 16/193 (8%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
+FV+N+ SV+ S L +F+ +G I S KS+G+ + + +A+AA+ L
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRSLYTAC----KSRGFVMISYYDIRAAHAAMRALQ 255
Query: 162 GSTINDKQIYVGRFVKK---SERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIV 218
+ + + + + + K SE+ D + L + N+D ++ L + F ++G+I
Sbjct: 256 NTLLRKRTLDIHFSIPKENPSEK-----DMNQGTLVIFNVDTTVSNDELLQLFGAYGEIR 310
Query: 219 SLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNH 278
+ E + F+ Y + DA+ AL+A+N S++G K + + ++ R +
Sbjct: 311 EIR----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPS 366
Query: 279 QFEEKRKEQILKY 291
Q ++ + ++ +
Sbjct: 367 QSQDLERTEVTNF 379
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
+ L++ L TE L E FS G++V I D + SKGFGFV + + D+A++AL
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 250 AMNGSQLGSKILYVARAQKK 269
NG QL + ++V A+ K
Sbjct: 94 EFNGQQLNGRTIFVDYAKAK 113
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 294 SNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAVN 352
S +++ + +++ L + FS CG + A+++ D SKGFGFV F++ +EA KA+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 353 TFHGFMFHGKPLYVALAQRKE 373
F+G +G+ ++V A+ K+
Sbjct: 94 EFNGQQLNGRTIFVDYAKAKQ 114
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 95 RKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESA 153
R+ +F+ L+ GL E F K G ++ +++VM +SKG+GFV F S + A
Sbjct: 29 RRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEA 88
Query: 154 NAAIEKLNGSTINDKQIYV 172
A+ + NG +N + I+V
Sbjct: 89 QKALMEFNGQQLNGRTIFV 107
>AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 93/193 (48%), Gaps = 16/193 (8%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
+FV+N+ SV+ S L +F+ +G I S KS+G+ + + +A+AA+ L
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRSLYTAC----KSRGFVMISYYDIRAAHAAMRALQ 242
Query: 162 GSTINDKQIYVGRFVKK---SERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIV 218
+ + + + + + K SE+ D + L + N+D ++ L + F ++G+I
Sbjct: 243 NTLLRKRTLDIHFSIPKENPSEK-----DMNQGTLVIFNVDTTVSNDELLQLFGAYGEIR 297
Query: 219 SLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNH 278
+ E + F+ Y + DA+ AL+A+N S++G K + + ++ R +
Sbjct: 298 EIR----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPS 353
Query: 279 QFEEKRKEQILKY 291
Q ++ + ++ +
Sbjct: 354 QSQDLERTEVTNF 366
>AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 93/193 (48%), Gaps = 16/193 (8%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
+FV+N+ SV+ S L +F+ +G I S KS+G+ + + +A+AA+ L
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRSLYTAC----KSRGFVMISYYDIRAAHAAMRALQ 242
Query: 162 GSTINDKQIYVGRFVKK---SERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIV 218
+ + + + + + K SE+ D + L + N+D ++ L + F ++G+I
Sbjct: 243 NTLLRKRTLDIHFSIPKENPSEK-----DMNQGTLVIFNVDTTVSNDELLQLFGAYGEIR 297
Query: 219 SLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNH 278
+ E + F+ Y + DA+ AL+A+N S++G K + + ++ R +
Sbjct: 298 EIR----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPS 353
Query: 279 QFEEKRKEQILKY 291
Q ++ + ++ +
Sbjct: 354 QSQDLERTEVTNF 366
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
T LY+ L TE L++ F FG ++ + + D+ KGF F+ YE ++A +A++
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 250 AMNGSQLGSKILYVARAQKKAERER 274
M+G L ++++V A+ +++ R
Sbjct: 137 GMHGKFLDGRVIFVEEAKTRSDMSR 161
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 10/194 (5%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKR 246
+ S T L +N+ T ++ F +G ++ + +S + ++G F+ +P++A
Sbjct: 90 EISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAAT 149
Query: 247 ALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVS 306
AL+++ + + L V A+ K ++ +E N++V N+
Sbjct: 150 ALKSLESCEYEGRRLKVDYAKTKKKKT--------YAPRETPSPVPTFNLFVANLAFEAR 201
Query: 307 DEELRDHFSA-CGSITSAKVMKDEKGI-SKGFGFVCFSTPEEANKAVNTFHGFMFHGKPL 364
+ L++ F A G++ S +V+ E S G+GFV F T ++A A+ F G F G+P+
Sbjct: 202 AKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPI 261
Query: 365 YVALAQRKEDRQAQ 378
+A +++ QA+
Sbjct: 262 RLAKSKQFVKLQAK 275
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 84/174 (48%), Gaps = 8/174 (4%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
+ +N+ + + +F+KYG+++ ++ M +++G F++ S E A A++ L
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLE 155
Query: 162 GSTINDKQIYVGRFVKKSE-----RILPGPDASYTNLYMKNLDLDITEALLKEKF-SSFG 215
+++ V K + R P P ++ NL++ NL + LKE F + G
Sbjct: 156 SCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTF-NLFVANLAFEARAKHLKEFFDADTG 214
Query: 216 KIVSLAISKDENG-MSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQK 268
+VS + EN S G+GFV+++ A+ AL G + + +A++++
Sbjct: 215 NVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQ 268
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 206 LLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYV 263
LLKE F SFGKIV + D E+G+S+GFGFV Y++ + A A++AM +L +I+ V
Sbjct: 51 LLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGV 109
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ L TE+ ++E SFG + + KD E G SKG+ F Y++
Sbjct: 355 LEGPD----RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDL 410
Query: 242 DDAKRALEAMNGSQLGSKILYVARAQ-----KKAERERILNHQFEEKRKEQILKYKGS-N 295
A A+NG ++G K L V RA +K E+E +L H ++ ++++ G+
Sbjct: 411 SVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVA 470
Query: 296 IYVKNIDDNVSDEELRD 312
V + V+++ELRD
Sbjct: 471 TTVVCLTQVVTEDELRD 487
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ L TE+ ++E SFG + + KD E G SKG+ F Y++
Sbjct: 333 LEGPD----RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDL 388
Query: 242 DDAKRALEAMNGSQLGSKILYVARAQ-----KKAERERILNHQFEEKRKEQILKYKGS-N 295
A A+NG ++G K L V RA +K E+E +L H ++ ++++ G+
Sbjct: 389 SVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVA 448
Query: 296 IYVKNIDDNVSDEELRD 312
V + V+++ELRD
Sbjct: 449 TTVVCLTQVVTEDELRD 465
>AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 |
chr5:2294248-2298491 FORWARD LENGTH=907
Length = 907
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 83/163 (50%), Gaps = 11/163 (6%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
+FV+N+ S++ L +FK++G++ + + GK++G+ V + +A A L+
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVRA----LHTAGKNRGFIMVSYYDIRAAQKAARALH 268
Query: 162 GSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLA 221
G + +++ + + K P ++S L++ NLD I+ L FSS+G+I +
Sbjct: 269 GRLLRGRKLDIRYSIPKEN---PKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVR 325
Query: 222 ISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVA 264
+ EN ++ + + AK AL+ +NG ++ + L +A
Sbjct: 326 RTMHENSQV----YIEFFDVRKAKVALQGLNGLEVAGRQLKLA 364
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 91 DPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFES 149
DP+ R F+ LA + GL + F+KYG+++ +KVV+ G+S+G+GF+ F+
Sbjct: 4 DPEYR------CFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDE 57
Query: 150 EESANAAIEKLNGSTINDKQIYV 172
+++ + AI +NG ++ + I V
Sbjct: 58 KKAMDEAIAAMNGMDLDGRTITV 80
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+F+ L+ D + L + F +G+++ +KV++ + G+S+G+GFV F E +A AAI ++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 161 NGSTINDKQIYV 172
+G +N + I V
Sbjct: 97 DGKELNGRHIRV 108
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G L DA L DAFA F ++ +V D TGRS +G+VNF A AI
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 74 NHSMLNGKVIRV 85
+ LNG+ IRV
Sbjct: 97 DGKELNGRHIRV 108
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+F+ L+ D + L + F +G+++ +KV++ + G+S+G+GFV F E +A AAI ++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 161 NGSTINDKQIYV 172
+G +N + I V
Sbjct: 97 DGKELNGRHIRV 108
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G L DA L DAFA F ++ +V D TGRS +G+VNF A AI
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 74 NHSMLNGKVIRV 85
+ LNG+ IRV
Sbjct: 97 DGKELNGRHIRV 108
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE 249
T L++ L +A L++ F+ FG +V + D E G S+GFGFVN+ + A A+
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 250 AMNGSQLGSKILYVARAQKKAERER 274
M+G +L + + V A + R
Sbjct: 95 EMDGKELNGRHIRVNPANDRPSAPR 119
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+F+ L+ D + L + F +G+++ +KV++ + G+S+G+GFV F E +A AAI ++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 161 NGSTINDKQIYV 172
+G +N + I V
Sbjct: 97 DGKELNGRHIRV 108
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G L DA L DAFA F ++ +V D TGRS +G+VNF A AI
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 74 NHSMLNGKVIRV 85
+ LNG+ IRV
Sbjct: 97 DGKELNGRHIRV 108
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE 249
T L++ L +A L++ F+ FG +V + D E G S+GFGFVN+ + A A+
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 250 AMNGSQLGSKILYVARAQKKAERER 274
M+G +L + + V A + R
Sbjct: 95 EMDGKELNGRHIRVNPANDRPSAPR 119
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+F+ L+ D + L + F +G+++ +KV++ + G+S+G+GFV F E +A AAI ++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 161 NGSTINDKQIYV 172
+G +N + I V
Sbjct: 97 DGKELNGRHIRV 108
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G L DA L DAFA F ++ +V D TGRS +G+VNF A AI
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 74 NHSMLNGKVIRV 85
+ LNG+ IRV
Sbjct: 97 DGKELNGRHIRV 108
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE 249
T L++ L +A L++ F+ FG +V + D E G S+GFGFVN+ + A A+
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 250 AMNGSQLGSKILYVARAQKKAERER 274
M+G +L + + V A + R
Sbjct: 95 EMDGKELNGRHIRVNPANDRPSAPR 119
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+ GDL +++D L AFA F +V RD TG++ YG+V+FL+P D A++
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 74 NHSMLNGKVIRVL---WSRR 90
N + + I++ W R
Sbjct: 199 NGKYVGNRPIKLRKSSWKER 218
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 10/181 (5%)
Query: 189 SYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRAL 248
S T L +N+ T ++ F +G ++ + +S + ++G F+ +P++A AL
Sbjct: 32 SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 91
Query: 249 EAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
+++ + + L V A+ K ++ +E N++V N+ +
Sbjct: 92 KSLESCEYEGRRLKVDYAKTKKKKT--------YAPRETPSPVPTFNLFVANLAFEARAK 143
Query: 309 ELRDHFSA-CGSITSAKVMKDEKGI-SKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
L++ F A G++ S +V+ E S G+GFV F T ++A A+ F G F G+P+ +
Sbjct: 144 HLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRL 203
Query: 367 A 367
A
Sbjct: 204 A 204
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 84/174 (48%), Gaps = 8/174 (4%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
+ +N+ + + +F+KYG+++ ++ M +++G F++ S E A A++ L
Sbjct: 36 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLE 95
Query: 162 GSTINDKQIYVGRFVKKSE-----RILPGPDASYTNLYMKNLDLDITEALLKEKF-SSFG 215
+++ V K + R P P ++ NL++ NL + LKE F + G
Sbjct: 96 SCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTF-NLFVANLAFEARAKHLKEFFDADTG 154
Query: 216 KIVSLAISKDENG-MSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQK 268
+VS + EN S G+GFV+++ A+ AL G + + +A++++
Sbjct: 155 NVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQ 208
>AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:7462697-7467630 FORWARD LENGTH=823
Length = 823
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 41/210 (19%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
+L++ NL I E L ++F FG++ SLA + + FVN+ + +DA A+E++
Sbjct: 24 HLWVGNLPHGILERELADRFLRFGELESLAFQP-----GRSYAFVNFNHDEDAFAAIESL 78
Query: 252 NGSQLGSKILYV--ARAQKKAERERILN-HQFEEKR----------KEQILKYKGSNIYV 298
G L L + A+A+K + R + ++ +E+R ++ ++Y+ + Y
Sbjct: 79 QGFPLSGNPLRIEFAKAEKSSTGSRTDDIYRHDEQRSAARGSSFVQRDSRMRYESPDTYS 138
Query: 299 KN-IDDN-----------------VSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVC 340
K+ ++D V D LR+ FS+ G IT V + + FV
Sbjct: 139 KSKMNDRNAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFP-----GRSYAFVQ 193
Query: 341 FSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
F A KA + G +F +++ A+
Sbjct: 194 FRNLMAACKAKESLQGKLFGNPRVHICFAK 223
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 110/256 (42%), Gaps = 59/256 (23%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VG+L I + +L D F F L S+ GRS Y +VNF +DA AIE
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESLAF----QPGRS--YAFVNFNHDEDAFAAIESL 78
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
L+G +R+ +++ KS G S ++I++
Sbjct: 79 QGFPLSGNPLRIEFAK----AEKSSTG-------------SRTDDIYRH----------- 110
Query: 134 ADDGKS--KGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYT 191
D+ +S +G FVQ +S + + + S +ND R + SE + G AS
Sbjct: 111 -DEQRSAARGSSFVQRDSRMRYESP-DTYSKSKMND------RNAEPSEVLYIGFPAS-- 160
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
L + +ALL+ FSSFG+I + + + + FV + N A +A E++
Sbjct: 161 --------LKVDDALLRNVFSSFGEITKVTVFP-----GRSYAFVQFRNLMAACKAKESL 207
Query: 252 NGSQLGSKILYVARAQ 267
G G+ +++ A+
Sbjct: 208 QGKLFGNPRVHICFAK 223
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 21/167 (12%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK-SKGYGFVQFESEESANAAIEK 159
VF + + E F K G + +++M + + SKG G+++F S AI
Sbjct: 169 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-A 227
Query: 160 LNGSTINDKQIYVGR--FVKKSE----------RILPGPDASYTNLYMKNLDLDITEALL 207
L+G Q+++G+ VK SE + G + LY+ NL +++E L
Sbjct: 228 LSG------QLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQL 281
Query: 208 KEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNG 253
++ F +FG + + + D E G KGFGF+ + + +K A A+NG
Sbjct: 282 RQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNG 328
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 10/154 (6%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSST--GRSLCYGYVNFLSP--QDAMQA 69
L+VG + +S++QL F EF + V + +D T R C+ L P ++A +
Sbjct: 20 LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCF----LLCPSREEADKL 75
Query: 70 IE-VKNHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILS 128
+ N L G + D ++ + +FV L ++V + ++ +F KYG I
Sbjct: 76 VNACHNKKTLPGANSLLQVKYADGELER-LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 129 SKVVMADDGKSKGYGFVQFESEESANAAIEKLNG 162
+++ SKG F+++E++E A +A+E +NG
Sbjct: 135 LQILRGAQQTSKGCAFLKYETKEQAVSAMESING 168
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 292 KGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKA 350
+G+N+++ NI D+EL F + G + SAKV D+ G+SK FGFV + + A A
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNA 406
Query: 351 VNTFHGFMFHGKPLYVALAQRKEDRQ 376
++ +G GK L V L + + Q
Sbjct: 407 IDMMNGRHLGGKKLKVQLKRDSNNGQ 432
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 185 GPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDD 243
GP+ + NL++ N+ + + L F SFG ++S + D+ G+SK FGFV+Y++
Sbjct: 345 GPEGA--NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAA 402
Query: 244 AKRALEAMNGSQLGSKILYV 263
A+ A++ MNG LG K L V
Sbjct: 403 AQNAIDMMNGRHLGGKKLKV 422
>AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 12 |
chr4:6557336-6559019 FORWARD LENGTH=326
Length = 326
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
+Y+ ++D +TE L F FG++V I D N + + F F+ + + A+ AL +
Sbjct: 151 TVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLR-FAFIEFTDEVGARTALN-L 208
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+G+ LG Y + +N F R E + IY NID ++ +++
Sbjct: 209 SGTMLG---FYPVKVMPSKTAIAPVNPTF-LPRTEDEREMCARTIYCTNIDKKLTQTDIK 264
Query: 312 DHF-SACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNT 353
F S CG + +++ D ++ GFV F E A A+N
Sbjct: 265 LFFESVCGEVYRLRLLGDYHHPTR-IGFVEFVMAESAIAALNC 306
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 14/156 (8%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSST--GRSLCYGYVNFLSP--QDAMQA 69
L+VG + +S++QL F EF + V + +D T R C+ L P ++A +
Sbjct: 20 LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCF----LLCPSREEADKL 75
Query: 70 IE-VKNHSMLNG--KVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNI 126
+ N L G +++V ++ + + + +FV L ++V + ++ +F KYG I
Sbjct: 76 VNACHNKKTLPGANSLLQVKYADGELERLEH---KLFVGMLPKNVSEAEVQSLFSKYGTI 132
Query: 127 LSSKVVMADDGKSKGYGFVQFESEESANAAIEKLNG 162
+++ SKG F+++E++E A +A+E +NG
Sbjct: 133 KDLQILRGAQQTSKGCAFLKYETKEQAVSAMESING 168
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 37/249 (14%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + ++E+ L F F + + I KD+ S+G F+ + ++A + + A
Sbjct: 20 LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNAC 79
Query: 252 NGSQL---GSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
+ + + +L V A + ER L H+ ++V + NVS+
Sbjct: 80 HNKKTLPGANSLLQVKYADGELER---LEHK----------------LFVGMLPKNVSEA 120
Query: 309 ELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG-FMFHGK--PLY 365
E++ FS G+I ++++ + SKG F+ + T E+A A+ + +G G PL
Sbjct: 121 EVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLV 180
Query: 366 VALAQRKEDRQAQLQLQYAQK-IAGL-----AGPST-AIIPGGYPPFYYTATGVVPHVPH 418
V A + +R + +LQ AQ IA L PS +P GY P Y G H P
Sbjct: 181 VKWADTERERHTR-RLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPY---NGYGYHPPG 236
Query: 419 RAGLMYQPL 427
G M P+
Sbjct: 237 TYGYMLPPI 245
>AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 |
chr1:11875174-11877188 REVERSE LENGTH=358
Length = 358
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 9/182 (4%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKR 246
D +Y+ +LD +TE L F S G++V I D N + + F F+ + + + A
Sbjct: 169 DVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLR-FAFIEFTDEEGAMT 227
Query: 247 ALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVS 306
AL ++G+ LG Y + +N F R E + IY NID V+
Sbjct: 228 ALN-LSGTMLG---FYPVKVLPSKTAIAPVNPTF-LPRTEDEREMCARTIYCTNIDKKVT 282
Query: 307 DEELRDHF-SACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLY 365
+++ F S CG + +++ D + S FV F E A A+N G + P+
Sbjct: 283 QSDVKIFFESFCGEVYRLRLLGDYQH-STRIAFVEFVMAESAIAALNC-SGVVLGSLPIR 340
Query: 366 VA 367
V+
Sbjct: 341 VS 342
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 15/156 (9%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YV DL +++ QL F + R+C D ++ L + ++ F + AM A+ +
Sbjct: 175 VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNS--VLRFAFIEFTDEEGAMTALNLS 232
Query: 74 NHSMLNGKVIRVLWSR------------RDPDVRKSCIGNVFVKNLAESVDSSGLEEIFK 121
+ML ++VL S+ R D R+ C ++ N+ + V S ++ F+
Sbjct: 233 G-TMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFE 291
Query: 122 KYGNILSSKVVMADDGKSKGYGFVQFESEESANAAI 157
+ + ++ D S FV+F ESA AA+
Sbjct: 292 SFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAAL 327
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 294 SNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVN 352
+ ++V + +D+ LR FS G I A++++D E KGFGF+ F + ++A KA+
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
Query: 353 TFHGFMFHGKPLYVALAQRKEDRQA 377
+ G + G+ ++V +A+ E+ +A
Sbjct: 67 SLDGKIVDGRLIFVEVAKNAEEVRA 91
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
L++ L T+ L++ FS FG+I + +D E KGFGF+ +++ DDA++AL+++
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKR 284
+G + ++++V A+ E +N E R
Sbjct: 69 DGKIVDGRLIFVEVAKNAEEVRAGINSNKAEDR 101
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 103 FVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLN 161
FV+ L + D L +IF K+GN++ SK++ D GKS+ +GFV FE E+S AI ++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 162 GSTINDKQIYVGRFVKKSER 181
K + VG + R
Sbjct: 70 VEESRSKCVNVGSITVEVAR 89
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 103 FVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLN 161
FV LA + + L+ F ++G+++ SK++ + G+S+G+GFV F+ E++ AIE++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 162 GSTINDKQIYV 172
G ++ + I V
Sbjct: 69 GKELDGRVITV 79
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 207 LKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVAR 265
L+ FS FG ++ I D E+G S+GFGFV +++ + A+E MNG +L +++ V
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 266 AQ 267
AQ
Sbjct: 82 AQ 83
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 103 FVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLN 161
FV LA + + L+ F ++G+++ SK++ + G+S+G+GFV F+ E++ AIE++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 162 GSTINDKQIYV 172
G ++ + I V
Sbjct: 69 GKELDGRVITV 79
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 207 LKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVAR 265
L+ FS FG ++ I D E+G S+GFGFV +++ + A+E MNG +L +++ V
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 266 AQ 267
AQ
Sbjct: 82 AQ 83
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMA-DDGKSKGYGFVQFESEESANAAIEK 159
+FV L+ V LE F ++G+IL ++++ D G+S+G+GF+ F + + +I +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 160 LNGSTINDKQIYVGR 174
++G D+ I V R
Sbjct: 68 MHGRDFGDRVISVNR 82
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 104 VKNLAESVDSSGLEEIFK---KYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAIE 158
VKNL+ GL++ K G ILS K ++ D +S GYGFV+F+S E+A +
Sbjct: 539 VKNLSFKTTDEGLKKHLTGVVKQGKILSVKQIIRDWTRRRSSGYGFVEFDSVETATSVYR 598
Query: 159 KLNGSTINDKQIYVGRFV--KKSERILPGPD--ASYTNLYMKNLDLDITEALLKEKFSSF 214
L G+ ++ + + F K+SE + G D L++KN+ + T+ L++ FS F
Sbjct: 599 DLPGNVLDGHSLILN-FSENKRSETVGEGSDKVTKLAKLHVKNVAFEATKKELRQLFSPF 657
Query: 215 GKI 217
G+I
Sbjct: 658 GQI 660
>AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846362-10847246 FORWARD LENGTH=152
Length = 152
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 283 KRKEQILKYK-GSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEK-GISKGFGFVC 340
K K + Y S I V+N+ + S++ L+ FSA G I K++KDE SKG+ F+
Sbjct: 28 KIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQ 87
Query: 341 FSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
F++ ++A A+ T M++G+ +Y+ +A+
Sbjct: 88 FTSQDDAFLAIETMDRRMYNGRMIYIDIAK 117
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 174 RFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKG 232
RF K + P AS + ++NL +E LK +FS+FG+I + + KDE SKG
Sbjct: 25 RFPKIKASLFNYPLAS--KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKG 82
Query: 233 FGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQ 267
+ F+ + + DDA A+E M+ +++Y+ A+
Sbjct: 83 YAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAK 117
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAIS-KDENGMSKGFGFVNYENPDDAKRALE 249
+ +++ L D+TE L+ F +GKI I + G +GFGF+ + + A A++
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 250 AMNGSQLGSKILYVARAQKK 269
M+G +LG+K++ V +A+ K
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAIS-KDENGMSKGFGFVNYENPDDAKRALE 249
+ +++ L D+TE L+ F +GKI I + G +GFGF+ + + A A++
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 250 AMNGSQLGSKILYVARAQKK 269
M+G +LG+K++ V +A+ K
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G L + + L DAF+ F +A VR+ D +GRS +G+V+F DA+ A +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 74 NHSMLNGKVIRV 85
+ L G+ +R+
Sbjct: 103 DGKGLLGRPLRI 114
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 16/102 (15%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEA 250
L++ L + E LK+ FSSFG++ + I+ D+ +G S+GFGFV++ DA A +A
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 251 MNGSQLGSKILYVARA---------------QKKAERERILN 277
M+G L + L ++ A + K ERER+
Sbjct: 102 MDGKGLLGRPLRISFALERVRGGPVVVPRLGKSKRERERVFK 143
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 103 FVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLN 161
FV LA + + L+ F ++G+++ SK++ + G+S+G+GFV F+ E++ AIE++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 162 GSTINDKQIYV 172
G ++ + I V
Sbjct: 69 GKELDGRVITV 79
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 207 LKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVAR 265
L+ FS FG ++ I D E+G S+GFGFV +++ + A+E MNG +L +++ V
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 266 AQKKA 270
AQ +
Sbjct: 82 AQSRG 86
>AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 |
chr1:11875028-11877188 REVERSE LENGTH=406
Length = 406
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 8/168 (4%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKR 246
D +Y+ +LD +TE L F S G++V I D N + + F F+ + + + A
Sbjct: 169 DVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLR-FAFIEFTDEEGAMT 227
Query: 247 ALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVS 306
AL ++G+ LG Y + +N F R E + IY NID V+
Sbjct: 228 ALN-LSGTMLG---FYPVKVLPSKTAIAPVNPTF-LPRTEDEREMCARTIYCTNIDKKVT 282
Query: 307 DEELRDHF-SACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNT 353
+++ F S CG + +++ D + S FV F E A A+N
Sbjct: 283 QSDVKIFFESFCGEVYRLRLLGDYQH-STRIAFVEFVMAESAIAALNC 329
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 15/156 (9%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YV DL +++ QL F + R+C D ++ L + ++ F + AM A+ +
Sbjct: 175 VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNS--VLRFAFIEFTDEEGAMTALNLS 232
Query: 74 NHSMLNGKVIRVLWSR------------RDPDVRKSCIGNVFVKNLAESVDSSGLEEIFK 121
+ML ++VL S+ R D R+ C ++ N+ + V S ++ F+
Sbjct: 233 G-TMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFE 291
Query: 122 KYGNILSSKVVMADDGKSKGYGFVQFESEESANAAI 157
+ + ++ D S FV+F ESA AA+
Sbjct: 292 SFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAAL 327
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMA-DDGKSKGYGFVQFESEESANAAIEKL 160
+FV ++ S D GL E F KYG ++ +K+++ + G+S+G+ FV F S E A+ A++ L
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 94
Query: 161 NGSTINDKQIYV 172
+G ++ ++I V
Sbjct: 95 DGQDLHGRRIRV 106
>AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 |
chr1:20057012-20059508 FORWARD LENGTH=506
Length = 506
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+V L+P D LH F+ F + S V RD TG SLCY ++ F + + QA
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 74 NHSMLNGKVIRV--------LWSR 89
++++++ + I V LWS+
Sbjct: 305 DNALIDDRRIHVDFSQSVSKLWSQ 328
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 293 GSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAV 351
+ +YV N+ +D+ LR+ FS G++ A VM+D S+GFGFV +S+ EA AV
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 352 NTFHGFMFHGKPLYVAL 368
+ G +G+ + V L
Sbjct: 62 SGMDGKELNGRRVSVKL 78
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
T +Y+ NL T+ +L+E FS +G +V + +D S+GFGFV Y + +A+ A+
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 250 AMNGSQLGSK 259
M+G +L +
Sbjct: 63 GMDGKELNGR 72
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAIEK 159
V+V NL+ + L E F YGN++ + +VM D +S+G+GFV + S A AA+
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDA-IVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 160 LNGSTINDKQIYVGRF 175
++G +N +++ V F
Sbjct: 64 MDGKELNGRRVSVKLF 79
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEA 250
++ + NL D E L E F FG + + ++ D+ G+S+GFGFVN+ + +DA+RA+
Sbjct: 241 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 300
Query: 251 MNGSQLGSKILYVARAQKK 269
+NG + IL V A +
Sbjct: 301 LNGYGYDNLILRVEWATPR 319
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEA 250
++ + NL D E L E F FG + + ++ D+ G+S+GFGFVN+ + +DA+RA+
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
Query: 251 MNGSQLGSKILYVARAQKK 269
+NG + IL V A +
Sbjct: 274 LNGYGYDNLILRVEWATPR 292
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 7/75 (9%)
Query: 103 FVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK-SKGYGFVQFESEESANAAIEKLN 161
FVK ++SV L+++F ++G + + K++ + + S GYG+V F S+E A +A+E +N
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 162 GSTINDKQIYVGRFV 176
G + + GRF+
Sbjct: 140 G------KFFDGRFI 148
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 281 EEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGI-SKGFGFV 339
+E R+ L S+++VK D+VS+ L+ FS G +T+ K++ +E+ S G+G+V
Sbjct: 64 DETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYV 123
Query: 340 CFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
F++ E+A AV +G F G+ + V Q
Sbjct: 124 WFNSKEDAQSAVEAMNGKFFDGRFILVKFGQ 154
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 15 YVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVKN 74
+V +S+ +L F+EF + +V++ + T +SL YGYV F S +DA A+E N
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 75 HSMLNGKVIRV------LWSRRDP 92
+G+ I V L RR P
Sbjct: 140 GKFFDGRFILVKFGQPGLSRRRRP 163
>AT4G25500.3 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,
At-RS40 | arginine/serine-rich splicing factor 35 |
chr4:13025850-13027243 FORWARD LENGTH=317
Length = 317
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 140 KGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYT-------- 191
+G+ FV E E A AI L+ K + KSER G D
Sbjct: 2 QGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSER---GGDKRSGGGSRRSSS 58
Query: 192 ------NLYMKNLDLDITEAL-LKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDA 244
L++ N D D T L++ F +GKIV++ I ++ F F+ YE +DA
Sbjct: 59 SMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRN-------FAFIQYEAQEDA 111
Query: 245 KRALEAMNGSQLGSKILYVARAQK 268
RAL+A N S+L K++ V A K
Sbjct: 112 TRALDASNNSKLMDKVISVEYAVK 135
>AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |
chr5:20779760-20781241 FORWARD LENGTH=265
Length = 265
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 16/154 (10%)
Query: 275 ILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISK 334
I+N KE++ +IYV N+D + EE++ HF +CG++ ++ D+ G K
Sbjct: 125 IINSGVSAAEKEEV---DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPK 181
Query: 335 GFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGPS 394
GF +V F E ++ + HG+ + V+ + Q + + P
Sbjct: 182 GFAYVEFVEVEAVQNSL-ILNESELHGRQIKVSAKRTNVPGMRQFRGR-----GRPFRPM 235
Query: 395 TAIIPG--GYPPFYYTATGVVPHVPHRAGLMYQP 426
+PG YPP+ Y G VP R + Y+P
Sbjct: 236 RGFMPGVPFYPPYAY---GRVPRF--RRPMRYRP 264
>AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
| chr3:2300579-2308305 REVERSE LENGTH=1294
Length = 1294
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
Query: 174 RFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGF 233
+FV E P A+ + +KNL L+ T AL++ F FG+I + + N S +
Sbjct: 1059 KFVGIPEANATIPPANNAAICVKNLPLNATIALVENAFKQFGEIRRGGV-EVRNKRSFSY 1117
Query: 234 GFVNYENPDDAKRALEA----------------------MNGSQLGSKILYVARAQKKAE 271
GFV ++ + A+RA++A + G I+Y R++ +
Sbjct: 1118 GFVEFKEENAAQRAIKASPVTIDLRSVYVEKKRPDYIRYWDTPSTGPGIIY--RSEGMSV 1175
Query: 272 RERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKG 331
+ N E +E Y ++VKN+ NV+ + + + F G I V +G
Sbjct: 1176 TKDYGNKGGNENNQEPRALYAA--VHVKNLPPNVTTDWVENAFKQFGPIKRGGVQVSNRG 1233
Query: 332 ISKGFGFVCFSTPEEANKAVN 352
+ FG V F A +AVN
Sbjct: 1234 VGNWFGNVKFVHAAAAERAVN 1254
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
L++ L T L++ F+SFG++V + D ++G SKGFGFV Y +DA++A M
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 252 NGSQLGSKILYV 263
N L +++V
Sbjct: 96 NAKFLDGWVIFV 107
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENG-MSKGFGFVNYENPDDAKRALE 249
+ LY+ NLD +T + + FS+FGK+ + + KD + S+G FV Y + +DA +A
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 250 AMNGSQLGSKILYVARA 266
+M+ L + L V+ A
Sbjct: 117 SMDAKILNGRKLTVSIA 133
>AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357570-6359024 REVERSE LENGTH=126
Length = 126
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 103 FVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK-SKGYGFVQFESEESANAAIEKLN 161
FVK ++SV L+++F ++G + + K++ + + S GYG+V F S+E A +A+E +N
Sbjct: 61 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
Query: 162 G 162
G
Sbjct: 121 G 121