Miyakogusa Predicted Gene

Lj1g3v4691630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4691630.1 tr|A9SDQ3|A9SDQ3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_77990
,38.24,1e-17,Mod_r,Modifier of rudimentary, Modr; seg,NULL; UNKNOWN
PROTEIN,NULL; WILLIAMS-BEUREN SYNDROME CRITIC,CUFF.32868.1
         (178 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53120.1 | Symbols: VPS37-1 | Modifier of rudimentary (Mod(r)...   157   5e-39
AT2G36680.1 | Symbols:  | Modifier of rudimentary (Mod(r)) prote...   153   5e-38
AT2G36680.2 | Symbols:  | Modifier of rudimentary (Mod(r)) prote...   115   2e-26
AT2G36680.4 | Symbols:  | Modifier of rudimentary (Mod(r)) prote...   115   2e-26
AT2G36680.3 | Symbols:  | Modifier of rudimentary (Mod(r)) prote...   115   2e-26

>AT3G53120.1 | Symbols: VPS37-1 | Modifier of rudimentary (Mod(r))
           protein | chr3:19690729-19692490 REVERSE LENGTH=217
          Length = 217

 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/120 (67%), Positives = 92/120 (76%)

Query: 59  AEAAGIISALKDKSVDELRKLLSDKDAYQQFLNSLDQVKIQNNLKDELCKENLQLAEENL 118
            EAAGII  LKDKSVDELRKLLSDKDAYQQFL SLDQVK+QNN+KDEL +E LQLA +NL
Sbjct: 53  GEAAGIIVFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARDNL 112

Query: 119 QKEPRIMELRNQCRIIRTTELATAXXXXXXXXXXXXXXXXXXSPASLLQRIQESINKTDE 178
           +KEP+IMELRNQCRIIRTTELATA                  SP SLL ++QE++N+ DE
Sbjct: 113 EKEPQIMELRNQCRIIRTTELATAQEKLNELERQKEEILKFYSPGSLLHKLQEAMNQVDE 172


>AT2G36680.1 | Symbols:  | Modifier of rudimentary (Mod(r)) protein
           | chr2:15368980-15370726 REVERSE LENGTH=218
          Length = 218

 Score =  153 bits (387), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/120 (65%), Positives = 92/120 (76%)

Query: 59  AEAAGIISALKDKSVDELRKLLSDKDAYQQFLNSLDQVKIQNNLKDELCKENLQLAEENL 118
            EAAGII+ LKDKSVDELRKLLSDKDAYQQFL+SLDQV IQNN+++EL KE L LA ENL
Sbjct: 53  GEAAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENL 112

Query: 119 QKEPRIMELRNQCRIIRTTELATAXXXXXXXXXXXXXXXXXXSPASLLQRIQESINKTDE 178
           +KEP+I+ELRNQCRIIRT+ELATA                  SP SLL R+Q+++N+ DE
Sbjct: 113 EKEPQIVELRNQCRIIRTSELATAQEKLNELENQREEILKFYSPGSLLHRLQDAMNQVDE 172


>AT2G36680.2 | Symbols:  | Modifier of rudimentary (Mod(r)) protein
           | chr2:15369314-15370726 REVERSE LENGTH=139
          Length = 139

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/72 (79%), Positives = 65/72 (90%)

Query: 59  AEAAGIISALKDKSVDELRKLLSDKDAYQQFLNSLDQVKIQNNLKDELCKENLQLAEENL 118
            EAAGII+ LKDKSVDELRKLLSDKDAYQQFL+SLDQV IQNN+++EL KE L LA ENL
Sbjct: 53  GEAAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENL 112

Query: 119 QKEPRIMELRNQ 130
           +KEP+I+ELRNQ
Sbjct: 113 EKEPQIVELRNQ 124


>AT2G36680.4 | Symbols:  | Modifier of rudimentary (Mod(r)) protein
           | chr2:15369314-15370726 REVERSE LENGTH=168
          Length = 168

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/72 (79%), Positives = 65/72 (90%)

Query: 59  AEAAGIISALKDKSVDELRKLLSDKDAYQQFLNSLDQVKIQNNLKDELCKENLQLAEENL 118
            EAAGII+ LKDKSVDELRKLLSDKDAYQQFL+SLDQV IQNN+++EL KE L LA ENL
Sbjct: 53  GEAAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENL 112

Query: 119 QKEPRIMELRNQ 130
           +KEP+I+ELRNQ
Sbjct: 113 EKEPQIVELRNQ 124


>AT2G36680.3 | Symbols:  | Modifier of rudimentary (Mod(r)) protein
           | chr2:15369314-15370726 REVERSE LENGTH=168
          Length = 168

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/72 (79%), Positives = 65/72 (90%)

Query: 59  AEAAGIISALKDKSVDELRKLLSDKDAYQQFLNSLDQVKIQNNLKDELCKENLQLAEENL 118
            EAAGII+ LKDKSVDELRKLLSDKDAYQQFL+SLDQV IQNN+++EL KE L LA ENL
Sbjct: 53  GEAAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENL 112

Query: 119 QKEPRIMELRNQ 130
           +KEP+I+ELRNQ
Sbjct: 113 EKEPQIVELRNQ 124