Miyakogusa Predicted Gene

Lj1g3v4691480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4691480.1 tr|Q7NIW8|Q7NIW8_GLOVI Endopeptidase Clp
ATP-binding chain OS=Gloeobacter violaceus (strain PCC
7421,44.59,0.0000000005,Double Clp-N motif,NULL; ATP-DEPENDENT CLP
PROTEASE,NULL; seg,NULL; no description,Double Clp-N moti,CUFF.32897.1
         (276 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50920.1 | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | C...   301   3e-82
AT3G48870.2 | Symbols: HSP93-III | Clp ATPase | chr3:18122363-18...   291   4e-79
AT3G48870.1 | Symbols: ATCLPC, ATHSP93-III, HSP93-III | Clp ATPa...   291   5e-79
AT3G45450.1 | Symbols:  | Double Clp-N motif-containing P-loop n...   164   9e-41
AT5G51070.1 | Symbols: ERD1, CLPD, SAG15 | Clp ATPase | chr5:207...    68   8e-12
AT4G12060.1 | Symbols:  | Double Clp-N motif protein | chr4:7228...    55   5e-08
AT4G25370.1 | Symbols:  | Double Clp-N motif protein | chr4:1297...    53   2e-07
AT1G21470.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    52   4e-07

>AT5G50920.1 | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC
           homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929
          Length = 929

 Score =  301 bits (771), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 170/254 (66%), Positives = 191/254 (75%), Gaps = 3/254 (1%)

Query: 23  IGIMSRVLAQSINIPGLVAGRTHGRNNRSTKSKRPVKMMYTTLQAPALRLSGFSGLRSFN 82
           + + +RVLAQS   P L   + +  +  S +S+R VKMM + LQ   LR+ GF GLR  N
Sbjct: 1   MAMATRVLAQSTP-PSLACYQRNVPSRGSGRSRRSVKMMCSQLQVSGLRMQGFMGLRGNN 59

Query: 83  NLDTMLRPGLDFHSKVFATTTMSRKARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGH 142
            LDT+ +   DFHSKV     +  K +ASR   KAMFERFTEKAIKVIMLAQEEARR+GH
Sbjct: 60  ALDTLGKSRQDFHSKVRQAMNVP-KGKASRFTVKAMFERFTEKAIKVIMLAQEEARRLGH 118

Query: 143 NFVGTEQVLLGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIGRGSGFVDVEIPFTPRAK 202
           NFVGTEQ+LLGLIGEGTGIAAKVLK+MGI+LKDARVEVEKIIGRGSGFV VEIPFTPRAK
Sbjct: 119 NFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAK 178

Query: 203 RVLELSLEEARLLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRSQVIRMVGEG 262
           RVLELSLEEAR LGHNYIGS             VAARVLENLGADPSNIR+QVIRMVGE 
Sbjct: 179 RVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGEN 238

Query: 263 ADTIAATVGPGRSS 276
            + + A VG G SS
Sbjct: 239 -NEVTANVGGGSSS 251


>AT3G48870.2 | Symbols: HSP93-III | Clp ATPase |
           chr3:18122363-18125915 REVERSE LENGTH=921
          Length = 921

 Score =  291 bits (745), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 154/221 (69%), Positives = 175/221 (79%), Gaps = 5/221 (2%)

Query: 50  RSTKSKRP---VKMMYTTLQAPALRLSGFSGLRSFNNLDTMLRPGLDFHSKVFATTTMSR 106
           ++T+ + P   VKMM ++LQAP L +  FSGLR+ + LD + RP   F  K +     S 
Sbjct: 14  QATEYREPRGRVKMM-SSLQAPLLTIQSFSGLRAPSALDYLGRPSPGFLVK-YKLAKSSG 71

Query: 107 KARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAKVL 166
           + +ASRCVPKAMFERFTEKAIKVIML+QEEARR+GHNFVGTEQ+LLGLIGEGTGIAAKVL
Sbjct: 72  REKASRCVPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVL 131

Query: 167 KAMGISLKDARVEVEKIIGRGSGFVDVEIPFTPRAKRVLELSLEEARLLGHNYIGSXXXX 226
           K+MGI+LKD+RVEVEKIIGRGSGFV VEIPFTPRAKRVLELSLEEAR LGHNYIGS    
Sbjct: 132 KSMGINLKDSRVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLL 191

Query: 227 XXXXXXXXXVAARVLENLGADPSNIRSQVIRMVGEGADTIA 267
                    VAARVLENLGADPSNIR+QVIRMVGE  +  A
Sbjct: 192 LGLLREGEGVAARVLENLGADPSNIRTQVIRMVGENNEVTA 232


>AT3G48870.1 | Symbols: ATCLPC, ATHSP93-III, HSP93-III | Clp ATPase
           | chr3:18122363-18126008 REVERSE LENGTH=952
          Length = 952

 Score =  291 bits (744), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 154/221 (69%), Positives = 175/221 (79%), Gaps = 5/221 (2%)

Query: 50  RSTKSKRP---VKMMYTTLQAPALRLSGFSGLRSFNNLDTMLRPGLDFHSKVFATTTMSR 106
           ++T+ + P   VKMM ++LQAP L +  FSGLR+ + LD + RP   F  K +     S 
Sbjct: 45  QATEYREPRGRVKMM-SSLQAPLLTIQSFSGLRAPSALDYLGRPSPGFLVK-YKLAKSSG 102

Query: 107 KARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAKVL 166
           + +ASRCVPKAMFERFTEKAIKVIML+QEEARR+GHNFVGTEQ+LLGLIGEGTGIAAKVL
Sbjct: 103 REKASRCVPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVL 162

Query: 167 KAMGISLKDARVEVEKIIGRGSGFVDVEIPFTPRAKRVLELSLEEARLLGHNYIGSXXXX 226
           K+MGI+LKD+RVEVEKIIGRGSGFV VEIPFTPRAKRVLELSLEEAR LGHNYIGS    
Sbjct: 163 KSMGINLKDSRVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLL 222

Query: 227 XXXXXXXXXVAARVLENLGADPSNIRSQVIRMVGEGADTIA 267
                    VAARVLENLGADPSNIR+QVIRMVGE  +  A
Sbjct: 223 LGLLREGEGVAARVLENLGADPSNIRTQVIRMVGENNEVTA 263


>AT3G45450.1 | Symbols:  | Double Clp-N motif-containing P-loop
           nucleoside triphosphate hydrolases superfamily protein |
           chr3:16673146-16674880 FORWARD LENGTH=341
          Length = 341

 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 92/138 (66%), Positives = 99/138 (71%), Gaps = 17/138 (12%)

Query: 118 MFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAKVLKAMGISLKDAR 177
           MFERFTEKAIKVI LAQEEARR+G+NF GTE +LL LIGEGTGIAAKVLK+MGI+LKDAR
Sbjct: 1   MFERFTEKAIKVITLAQEEARRLGYNFFGTEHILLSLIGEGTGIAAKVLKSMGINLKDAR 60

Query: 178 VEVEKIIGRGSGFVDVEIPFTPRAKRVLELSLEEARLLGHNYIGSXXXXXXXXXXXXXVA 237
           VEVEKIIGRGSGFV VEIPFTPR               G    GS             +A
Sbjct: 61  VEVEKIIGRGSGFVVVEIPFTPRKA-----------CAGFVTRGS------STTRHKGIA 103

Query: 238 ARVLENLGADPSNIRSQV 255
            RVLE LGADPSNIR+QV
Sbjct: 104 VRVLEILGADPSNIRTQV 121


>AT5G51070.1 | Symbols: ERD1, CLPD, SAG15 | Clp ATPase |
           chr5:20764479-20768481 FORWARD LENGTH=945
          Length = 945

 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 10/141 (7%)

Query: 117 AMFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGE--------GTGIA-AKVLK 167
           A+FERFTE+AI+ I+ +Q+EA+ +G + V T+ +LLGLI E        G+GI   K  +
Sbjct: 78  AVFERFTERAIRAIIFSQKEAKSLGKDMVYTQHLLLGLIAEDRDPQGFLGSGITIDKARE 137

Query: 168 AMGISLKDARVEVEKIIGRGSGFV-DVEIPFTPRAKRVLELSLEEARLLGHNYIGSXXXX 226
           A+     +A  + ++     + +    ++PF+   KRV E ++E +R +   YI      
Sbjct: 138 AVWSIWDEANSDSKQEEASSTSYSKSTDMPFSISTKRVFEAAVEYSRTMDCQYIAPEHIA 197

Query: 227 XXXXXXXXXVAARVLENLGAD 247
                     A RVL+ LGA+
Sbjct: 198 VGLFTVDDGSAGRVLKRLGAN 218


>AT4G12060.1 | Symbols:  | Double Clp-N motif protein |
           chr4:7228269-7229898 REVERSE LENGTH=241
          Length = 241

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 2/106 (1%)

Query: 108 ARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAKVLK 167
           A     V  A   +++ +AIK   + + EAR++ +   GTE +L+G++ EGT   +K L+
Sbjct: 80  ANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTSFTSKFLR 139

Query: 168 AMGISLKDARVEVEKIIGRGS--GFVDVEIPFTPRAKRVLELSLEE 211
           A  I L   R E  K++G+     F     P T  A+R L+ +L++
Sbjct: 140 ANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQ 185


>AT4G25370.1 | Symbols:  | Double Clp-N motif protein |
           chr4:12972747-12974580 FORWARD LENGTH=238
          Length = 238

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 121 RFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAKVLKAMGISLKDARVEV 180
           +++ +AIK + + + EAR++ +   GTE +L+G++ EGT   AK L+  G++L   R E 
Sbjct: 85  KWSARAIKSLAMGELEARKLKYPSTGTEAILMGILVEGTSTVAKFLRGNGVTLFKVRDET 144

Query: 181 EKIIGRGS--GFVDVEIPFTPRAKRVLELSLEE 211
             ++G+     F     P T  A++ +  +++E
Sbjct: 145 LSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDE 177


>AT1G21470.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 326 Blast
           hits to 324 proteins in 95 species: Archae - 0; Bacteria
           - 130; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0;
           Other Eukaryotes - 129 (source: NCBI BLink). |
           chr1:7516709-7517179 REVERSE LENGTH=118
          Length = 118

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 27/100 (27%)

Query: 109 RASRCVPKAMFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAKVLKA 168
           + SR   + +FERFTE+ +K IMLA+EE RR GH                   A K+ + 
Sbjct: 37  KPSRLFLRMLFERFTEETMKAIMLAKEETRRFGH-------------------AIKIDRQ 77

Query: 169 MGISLKDARVEVEKIIGRGSGFVDVEIPFTPRAKRVLELS 208
            G+   +  +EVEK+  R      + IPF  RAK +LELS
Sbjct: 78  RGL---NEPIEVEKMEIRA-----INIPFGLRAKYILELS 109