Miyakogusa Predicted Gene

Lj1g3v4690370.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4690370.1 Non Chatacterized Hit- tr|D8R0G4|D8R0G4_SELML
Putative uncharacterized protein OS=Selaginella moelle,33.93,1e-18,PH
DOMAIN CONTAINING PROTEIN,NULL; VACUOLAR PROTEIN SORTING-ASSOCIATED
PROTEIN (VPS13),Vacuolar prot,gene.g37021.t1.1
         (214 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17140.3 | Symbols:  | pleckstrin homology (PH) domain-contai...   221   3e-58
AT4G17140.2 | Symbols:  | pleckstrin homology (PH) domain-contai...   221   3e-58
AT4G17140.1 | Symbols:  | pleckstrin homology (PH) domain-contai...   221   3e-58
AT1G48090.1 | Symbols:  | calcium-dependent lipid-binding family...    76   2e-14

>AT4G17140.3 | Symbols:  | pleckstrin homology (PH)
           domain-containing protein | chr4:9613617-9636618 REVERSE
           LENGTH=4219
          Length = 4219

 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/158 (67%), Positives = 127/158 (80%)

Query: 24  WNRLNKIIGYKEGDDGQSPVNSKADVMHTFLVVHMNHNASKLIGEAQDLVAELSCEDLSC 83
           W RLNK+IGYKEGD+     N+K D +HTFL V M  +ASKL    ++ +AELSCE L+C
Sbjct: 458 WERLNKVIGYKEGDEQSIINNAKPDALHTFLEVQMKRSASKLYDGEKECLAELSCEGLNC 517

Query: 84  SVKLYPETKVFDIKLGSYQLSSPKGLLAESAASFDSLVGVFKYKPFDDKVDWSMVAKASP 143
           SVKL+PETK+ DIKLG Y+LSSP GLLAESA +  S++ VF YKPFD KVDWS+VAKASP
Sbjct: 518 SVKLFPETKIADIKLGRYRLSSPSGLLAESAPASHSVLAVFCYKPFDAKVDWSLVAKASP 577

Query: 144 CYMTYMKDSINQIVKFFETNATVSQTIALETAAAVQST 181
           CYMTY+KDSI+ IV FFE++  VSQTIALETAAAVQST
Sbjct: 578 CYMTYLKDSIDGIVNFFESSTAVSQTIALETAAAVQST 615


>AT4G17140.2 | Symbols:  | pleckstrin homology (PH)
           domain-containing protein | chr4:9613617-9636618 REVERSE
           LENGTH=4218
          Length = 4218

 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/158 (67%), Positives = 127/158 (80%)

Query: 24  WNRLNKIIGYKEGDDGQSPVNSKADVMHTFLVVHMNHNASKLIGEAQDLVAELSCEDLSC 83
           W RLNK+IGYKEGD+     N+K D +HTFL V M  +ASKL    ++ +AELSCE L+C
Sbjct: 458 WERLNKVIGYKEGDEQSIINNAKPDALHTFLEVQMKRSASKLYDGEKECLAELSCEGLNC 517

Query: 84  SVKLYPETKVFDIKLGSYQLSSPKGLLAESAASFDSLVGVFKYKPFDDKVDWSMVAKASP 143
           SVKL+PETK+ DIKLG Y+LSSP GLLAESA +  S++ VF YKPFD KVDWS+VAKASP
Sbjct: 518 SVKLFPETKIADIKLGRYRLSSPSGLLAESAPASHSVLAVFCYKPFDAKVDWSLVAKASP 577

Query: 144 CYMTYMKDSINQIVKFFETNATVSQTIALETAAAVQST 181
           CYMTY+KDSI+ IV FFE++  VSQTIALETAAAVQST
Sbjct: 578 CYMTYLKDSIDGIVNFFESSTAVSQTIALETAAAVQST 615


>AT4G17140.1 | Symbols:  | pleckstrin homology (PH)
           domain-containing protein | chr4:9613617-9636618 REVERSE
           LENGTH=4216
          Length = 4216

 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/158 (67%), Positives = 127/158 (80%)

Query: 24  WNRLNKIIGYKEGDDGQSPVNSKADVMHTFLVVHMNHNASKLIGEAQDLVAELSCEDLSC 83
           W RLNK+IGYKEGD+     N+K D +HTFL V M  +ASKL    ++ +AELSCE L+C
Sbjct: 458 WERLNKVIGYKEGDEQSIINNAKPDALHTFLEVQMKRSASKLYDGEKECLAELSCEGLNC 517

Query: 84  SVKLYPETKVFDIKLGSYQLSSPKGLLAESAASFDSLVGVFKYKPFDDKVDWSMVAKASP 143
           SVKL+PETK+ DIKLG Y+LSSP GLLAESA +  S++ VF YKPFD KVDWS+VAKASP
Sbjct: 518 SVKLFPETKIADIKLGRYRLSSPSGLLAESAPASHSVLAVFCYKPFDAKVDWSLVAKASP 577

Query: 144 CYMTYMKDSINQIVKFFETNATVSQTIALETAAAVQST 181
           CYMTY+KDSI+ IV FFE++  VSQTIALETAAAVQST
Sbjct: 578 CYMTYLKDSIDGIVNFFESSTAVSQTIALETAAAVQST 615


>AT1G48090.1 | Symbols:  | calcium-dependent lipid-binding family
           protein | chr1:17732582-17758194 REVERSE LENGTH=4146
          Length = 4146

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 4/160 (2%)

Query: 24  WNRLNKIIGYKEGDDGQSPVNSKADVMHTFLV-VHMNHNASKLIGEAQDLVAELSCEDLS 82
           W  +NK++ ++  ++           M  FLV V +   A++++   Q  V     E L 
Sbjct: 513 WKAINKLLSHQPDEEMNLYSGKDMQNMTHFLVTVSIGQGAARIVDINQTEVLCGRFEQLD 572

Query: 83  CSVKLYPETKVFDIKLGSYQLSSPKGLLAESAAS---FDSLVGVFKYKPFDDKVDWSMVA 139
            + K    +   D+ L  Y LS+P+G LA+S +S    ++L+  F   P  + +DW + A
Sbjct: 573 VTTKFRHRSTQCDVSLRFYGLSAPEGSLAQSVSSERKTNALMASFVNAPIGENIDWRLSA 632

Query: 140 KASPCYMTYMKDSINQIVKFFETNATVSQTIALETAAAVQ 179
             SPC+ T   +S +++++F + +  VS T+ALETAA +Q
Sbjct: 633 TISPCHATIWTESYDRVLEFVKRSNAVSPTVALETAAVLQ 672