Miyakogusa Predicted Gene

Lj1g3v4680330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4680330.1 tr|A9RAU8|A9RAU8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_63656
,33.81,8e-17,Tudor/PWWP/MBT,NULL; PWWP,PWWP; no description,NULL;
seg,NULL,CUFF.33000.1
         (321 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05430.1 | Symbols:  | Tudor/PWWP/MBT superfamily protein | c...    57   2e-08
AT5G27650.1 | Symbols:  | Tudor/PWWP/MBT superfamily protein | c...    52   6e-07

>AT3G05430.1 | Symbols:  | Tudor/PWWP/MBT superfamily protein |
           chr3:1567745-1571037 FORWARD LENGTH=965
          Length = 965

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 154 GSVVWARTAGEIWWPAEIMEE---RPALSDPVSDGHVLVQFYGNNPSAWVDPVTDISTFE 210
           G +VW +     WWP +I  E    P++      G+VLV F+G+N   W DP  ++  FE
Sbjct: 136 GDMVWGKVKSHPWWPGQIFNEAFASPSVRRVKKMGYVLVAFFGDNSYGWFDPA-ELIPFE 194

Query: 211 DSFEERSNNPSKD-FQEALKQAL 232
              +E+S   S D F +A+++A+
Sbjct: 195 PHVKEKSQQTSSDHFAKAVEEAM 217


>AT5G27650.1 | Symbols:  | Tudor/PWWP/MBT superfamily protein |
           chr5:9785511-9789094 FORWARD LENGTH=1072
          Length = 1072

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 154 GSVVWARTAGEIWWPAEIMEE---RPALSDPVSDGHVLVQFYGNNPSAWVDPVTDISTFE 210
           G +VW +     WWP  I  E    P++       HVLV F+G++   W DP  ++  FE
Sbjct: 174 GDLVWGKVKSHPWWPGHIFNEAFASPSVRRMRRIDHVLVAFFGDSSYGWFDP-AELIPFE 232

Query: 211 DSFEERSNNP-SKDF----QEALKQALQRKAQLSSCR 242
            + EE+S    SK F    +EA  +A +R A   +C+
Sbjct: 233 PNLEEKSQQTVSKHFVRAVEEAKDEASRRSALGLTCK 269