Miyakogusa Predicted Gene

Lj1g3v4616540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4616540.1 Non Chatacterized Hit- tr|K3XN47|K3XN47_SETIT
Uncharacterized protein OS=Setaria italica GN=Si002987,52.17,5e-18,
,CUFF.32805.1
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36835.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   181   1e-46

>AT2G36835.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
           DURING: 13 growth stages; Has 26 Blast hits to 26
           proteins in 11 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:15449839-15451307 REVERSE LENGTH=124
          Length = 124

 Score =  181 bits (460), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 107/130 (82%), Gaps = 6/130 (4%)

Query: 1   MSKKGAGGGSPSLQNDVPWRALSSSMKPVPKIHQSPVLRISQNPFSDYAISVMRHPDPIG 60
           M+KKG      +L  D PWR   SS +PVPKI +SPVL ISQNP +DYAISVM+HP+P+G
Sbjct: 1   MAKKGGA----TLAEDAPWRV--SSGRPVPKISRSPVLSISQNPETDYAISVMKHPNPVG 54

Query: 61  GGFGEGAIVEAAGPDCIVPGQAMPIKLLGLKVWPINVDLKFLEPVGRELKQLGKFMDDAV 120
           GGF   A++E+AGP+C+VPGQ  P++LLG+KVWP+ VDLKFLEPVG+ELK LGKFMD+AV
Sbjct: 55  GGFAMEAVLESAGPECVVPGQVTPLRLLGVKVWPVEVDLKFLEPVGKELKMLGKFMDNAV 114

Query: 121 ELMNKSFIER 130
           ELMNKSFI+R
Sbjct: 115 ELMNKSFIDR 124