Miyakogusa Predicted Gene

Lj1g3v4614460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4614460.1 Non Chatacterized Hit- tr|A5C6I8|A5C6I8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,47.86,2e-18,zf-RING_2,Zinc finger, RING-type; no description,Zinc
finger, RING/FYVE/PHD-type; RFWD3 PROTEIN-RELA,CUFF.32857.1
         (414 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03450.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   258   5e-69
AT4G01270.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    49   7e-06

>AT5G03450.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:858954-862238 REVERSE LENGTH=630
          Length = 630

 Score =  258 bits (659), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 137/312 (43%), Positives = 185/312 (59%), Gaps = 16/312 (5%)

Query: 84  TSDSVEVILIPDSEQQNYSEEDGNKRRRIEEGEAPTSSLGSQGNELTGTDIDGLVCPICM 143
           T + ++V+  P    QN SE   N+ R   +G   +SS   +  E    D +GL C ICM
Sbjct: 67  TREYIDVLDSPVRVSQNESEGIENQNR--SQGVCSSSSGSQEDVEWKQGDTEGLSCSICM 124

Query: 144 DAWTNNGEHHICCLPCGHVYGMSCINKWLQHRKSSGKCPQCKSKCSLKDVRKLYASRLVA 203
           + WT+ G+H +CCLPCGH+YG SCINKW Q R+S GKCP C   CSL+DVRK+YASR+ A
Sbjct: 125 EVWTSGGQHQVCCLPCGHLYGYSCINKWFQQRRSGGKCPLCNKICSLRDVRKIYASRVAA 184

Query: 204 VDGNLHKRIRSLEDKCSGLESKDGQWNKKEAEWKKRETVLYHEVQKLTERNTYLEQLLLL 263
           VD   HKRI  LE K   +E K   W+ KE +WK  E  L  EV KL ++   +E     
Sbjct: 185 VDDEAHKRILFLEAKLRSIEQKTASWSNKEVQWKITEAELRLEVTKLKKKIANMES---- 240

Query: 264 DVQNRQSEMMDGNMKPQRRYECERNWSPKSHGKGSKFCGEEPFCNFEFREAFRVDGARLF 323
             +  QS+    N+  Q +Y    N   + H       G+ P C+F  +    ++G R+F
Sbjct: 241 TTKGSQSQ---SNVASQEKYIPAHNIYQEHH-------GQSPSCSFRHQGDLLINGGRIF 290

Query: 324 DMDTSNDILLIARKPKAIGGEHLLTKMSLISPFEMEDIVLPSTTNAIRDLHISPSGNRLA 383
           D+D    ILL AR+   +GG  +LT+MSL SP E++DI+LP TT AI+DLH+SP  N LA
Sbjct: 291 DIDGGRQILLYARRLSGVGGTFVLTQMSLHSPCEIDDILLPRTTRAIKDLHLSPHNNGLA 350

Query: 384 LYASLGKKLSVL 395
           ++ SLGKKLSV+
Sbjct: 351 VFGSLGKKLSVI 362


>AT4G01270.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:532351-534891 FORWARD LENGTH=506
          Length = 506

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 138 VCPICMDAWTNNGEHHICCLPCGHVYGMSCINKWLQHRKSSGK--CPQCKSKCSLKDVRK 195
           +C IC +      E+      CGHV+   C+ +W ++  S+ K  CP CK KCSLKD  +
Sbjct: 11  ICSICYEDLKPVVENLQSISACGHVFHELCLQQWFEYCPSTNKRNCPICKQKCSLKDPCR 70

Query: 196 LYASRLVAVDGNLHKRIRSLEDKCSGLE 223
           LY        GN    I S  DK  G+E
Sbjct: 71  LY----FQSSGNQTDSIAS--DKVVGIE 92