Miyakogusa Predicted Gene

Lj1g3v4604360.2
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4604360.2 tr|A7RL08|A7RL08_NEMVE Predicted protein
(Fragment) OS=Nematostella vectensis GN=v1g85406 PE=4
SV=1,31.72,3e-16,WD40 repeat-like,WD40-repeat-containing domain; no
description,WD40/YVTN repeat-like-containing doma,CUFF.32813.2
         (382 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03450.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   301   5e-82
AT5G03750.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    63   4e-10

>AT5G03450.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:858954-862238 REVERSE LENGTH=630
          Length = 630

 Score =  301 bits (771), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 171/383 (44%), Positives = 236/383 (61%), Gaps = 17/383 (4%)

Query: 5   NMKPQRRYECERNWSPKSHGKGSKFCGEEPFCNFEFREAFRVDGARLFDMDTSNDILLIA 64
           N+  Q +Y    N   + HG       + P C+F  +    ++G R+FD+D    ILL A
Sbjct: 250 NVASQEKYIPAHNIYQEHHG-------QSPSCSFRHQGDLLINGGRIFDIDGGRQILLYA 302

Query: 65  RKPKAIGGEHLLTKMSLISPFEMEDIVLPSTTNAIRDLHISPSGNRLALYASLGKKLSVL 124
           R+   +GG  +LT+MSL SP E++DI+LP TT AI+DLH+SP  N LA++ SLGKKLSV+
Sbjct: 303 RRLSGVGGTFVLTQMSLHSPCEIDDILLPRTTRAIKDLHLSPHNNGLAVFGSLGKKLSVI 362

Query: 125 SLDSSNIVVNYDLQIPAWSCSWDLNSTNYIYAGLQNGSIMVFDLRQTSGPVKSLFGLSNK 184
           SL+S N V++YDL    WSCSWDL S+++IYAGLQNG +++FD+RQT+GP  S+ GL+  
Sbjct: 363 SLESHNTVLSYDLPAAPWSCSWDLKSSHHIYAGLQNGMVLIFDMRQTTGPFASMTGLTTN 422

Query: 185 PVHTVQSLAQTLCLPSGARTILSASSGGICQWNID-SEAGPFVVPETDNQGVCISLAYCS 243
           PVHTV  L+      S  RT+LSASS G+CQWNI  SE  P +V ET N GVCIS +YC 
Sbjct: 423 PVHTVHHLSGNSTPTSDVRTLLSASSIGLCQWNISGSEGSPSLVSETGNPGVCISSSYCP 482

Query: 244 SSDDIVGSYRPTFDMSMDVSHSQPLLTPSQVIG---QGVQGCHVLFKGMG-SHHFQKTGS 299
            S+ IV SYRP    S D   +QP LT + V      GV G HV  K  G   ++QK  S
Sbjct: 483 RSNHIVASYRPRVGSSDDTVPTQPSLTQTGVSNSNSNGVDGFHVCHKRRGVDSYYQKLSS 542

Query: 300 THADVSKSLLPKCVIIDMENQSR-LFASRDEVTNDLVLYELPSFRVHQQFKMPAQ--SRD 356
           T A V    LP+  IID   + + LFAS DE T +L+L +  +F + Q+  + +    +D
Sbjct: 543 TQAIVDPIRLPRTAIIDFGGERKQLFASCDESTRELILQDPSTFTISQRLPLSSHLPLQD 602

Query: 357 VRYSTSHWA--LGCLSENSVQLF 377
           V+Y   + +  LG L+++ +Q+ 
Sbjct: 603 VKYCHVNGSDLLGLLTDDRLQIL 625


>AT5G03750.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: Transducin/WD40 repeat-like superfamily protein
           (TAIR:AT5G03450.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:984796-985497 FORWARD
           LENGTH=169
          Length = 169

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 143 SCSWDLNSTNYIYAGLQNGSIMVFDLRQTSGPVKSLFGLSNKPVHTV 189
           SCSWDLN+ + +YAGLQNG ++VFD+RQ  GP+ SL  +++  VH V
Sbjct: 41  SCSWDLNNYHNVYAGLQNGMVLVFDMRQNRGPLVSLADVTSNSVHIV 87