Miyakogusa Predicted Gene
- Lj1g3v4604360.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4604360.2 tr|A7RL08|A7RL08_NEMVE Predicted protein
(Fragment) OS=Nematostella vectensis GN=v1g85406 PE=4
SV=1,31.72,3e-16,WD40 repeat-like,WD40-repeat-containing domain; no
description,WD40/YVTN repeat-like-containing doma,CUFF.32813.2
(382 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G03450.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 301 5e-82
AT5G03750.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 63 4e-10
>AT5G03450.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:858954-862238 REVERSE LENGTH=630
Length = 630
Score = 301 bits (771), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 171/383 (44%), Positives = 236/383 (61%), Gaps = 17/383 (4%)
Query: 5 NMKPQRRYECERNWSPKSHGKGSKFCGEEPFCNFEFREAFRVDGARLFDMDTSNDILLIA 64
N+ Q +Y N + HG + P C+F + ++G R+FD+D ILL A
Sbjct: 250 NVASQEKYIPAHNIYQEHHG-------QSPSCSFRHQGDLLINGGRIFDIDGGRQILLYA 302
Query: 65 RKPKAIGGEHLLTKMSLISPFEMEDIVLPSTTNAIRDLHISPSGNRLALYASLGKKLSVL 124
R+ +GG +LT+MSL SP E++DI+LP TT AI+DLH+SP N LA++ SLGKKLSV+
Sbjct: 303 RRLSGVGGTFVLTQMSLHSPCEIDDILLPRTTRAIKDLHLSPHNNGLAVFGSLGKKLSVI 362
Query: 125 SLDSSNIVVNYDLQIPAWSCSWDLNSTNYIYAGLQNGSIMVFDLRQTSGPVKSLFGLSNK 184
SL+S N V++YDL WSCSWDL S+++IYAGLQNG +++FD+RQT+GP S+ GL+
Sbjct: 363 SLESHNTVLSYDLPAAPWSCSWDLKSSHHIYAGLQNGMVLIFDMRQTTGPFASMTGLTTN 422
Query: 185 PVHTVQSLAQTLCLPSGARTILSASSGGICQWNID-SEAGPFVVPETDNQGVCISLAYCS 243
PVHTV L+ S RT+LSASS G+CQWNI SE P +V ET N GVCIS +YC
Sbjct: 423 PVHTVHHLSGNSTPTSDVRTLLSASSIGLCQWNISGSEGSPSLVSETGNPGVCISSSYCP 482
Query: 244 SSDDIVGSYRPTFDMSMDVSHSQPLLTPSQVIG---QGVQGCHVLFKGMG-SHHFQKTGS 299
S+ IV SYRP S D +QP LT + V GV G HV K G ++QK S
Sbjct: 483 RSNHIVASYRPRVGSSDDTVPTQPSLTQTGVSNSNSNGVDGFHVCHKRRGVDSYYQKLSS 542
Query: 300 THADVSKSLLPKCVIIDMENQSR-LFASRDEVTNDLVLYELPSFRVHQQFKMPAQ--SRD 356
T A V LP+ IID + + LFAS DE T +L+L + +F + Q+ + + +D
Sbjct: 543 TQAIVDPIRLPRTAIIDFGGERKQLFASCDESTRELILQDPSTFTISQRLPLSSHLPLQD 602
Query: 357 VRYSTSHWA--LGCLSENSVQLF 377
V+Y + + LG L+++ +Q+
Sbjct: 603 VKYCHVNGSDLLGLLTDDRLQIL 625
>AT5G03750.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Transducin/WD40 repeat-like superfamily protein
(TAIR:AT5G03450.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:984796-985497 FORWARD
LENGTH=169
Length = 169
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 143 SCSWDLNSTNYIYAGLQNGSIMVFDLRQTSGPVKSLFGLSNKPVHTV 189
SCSWDLN+ + +YAGLQNG ++VFD+RQ GP+ SL +++ VH V
Sbjct: 41 SCSWDLNNYHNVYAGLQNGMVLVFDMRQNRGPLVSLADVTSNSVHIV 87