Miyakogusa Predicted Gene

Lj1g3v4604360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4604360.1 Non Chatacterized Hit- tr|E7FGP7|E7FGP7_DANRE
Uncharacterized protein OS=Danio rerio PE=4 SV=1,24.12,2e-17,WD40
repeat-like,WD40-repeat-containing domain; RING/U-box,NULL; no
description,Zinc finger, RING/FY,CUFF.32813.1
         (532 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03450.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   422   e-118
AT5G03750.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    63   6e-10

>AT5G03450.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:858954-862238 REVERSE LENGTH=630
          Length = 630

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/537 (43%), Positives = 318/537 (59%), Gaps = 45/537 (8%)

Query: 1   MDAWTNNGEHHICCLPCGHVYGMSCINKWLQHRKSSGKCPQCKSKCSLKDVRKLYASRLV 60
           M+ WT+ G+H +CCLPCGH+YG SCINKW Q R+S GKCP C   CSL+DVRK+YASR+ 
Sbjct: 124 MEVWTSGGQHQVCCLPCGHLYGYSCINKWFQQRRSGGKCPLCNKICSLRDVRKIYASRVA 183

Query: 61  AVDGNLHKRIRSLEDKCSGLESKDGQWNKKEAEWKKRVATLQSKDGNWHKKEAEWKKRET 120
           AVD   HKRI  LE K   +E K   W+ KE +                     WK  E 
Sbjct: 184 AVDDEAHKRILFLEAKLRSIEQKTASWSNKEVQ---------------------WKITEA 222

Query: 121 VLYHEVQKLTERNTYLEQLLLLDVQNRQSEMMDGNMKPQRRYECERNWSPKSHGKGSKFC 180
            L  EV KL ++   +E       +  QS+    N+  Q +Y    N   + HG      
Sbjct: 223 ELRLEVTKLKKKIANMEST----TKGSQSQ---SNVASQEKYIPAHNIYQEHHG------ 269

Query: 181 GEEPFCNFEFREAFRVDGARLFDMDTSNDILLIARKPKAIGGEHLLTKMSLISPFEMEDI 240
            + P C+F  +    ++G R+FD+D    ILL AR+   +GG  +LT+MSL SP E++DI
Sbjct: 270 -QSPSCSFRHQGDLLINGGRIFDIDGGRQILLYARRLSGVGGTFVLTQMSLHSPCEIDDI 328

Query: 241 VLPSTTNAIRDLHISPSGNRLALYASLGKKLSVLSLDSSNIVVNYDLQIPAWSCSWDLNS 300
           +LP TT AI+DLH+SP  N LA++ SLGKKLSV+SL+S N V++YDL    WSCSWDL S
Sbjct: 329 LLPRTTRAIKDLHLSPHNNGLAVFGSLGKKLSVISLESHNTVLSYDLPAAPWSCSWDLKS 388

Query: 301 TNYIYAGLQNGSIMVFDLRQTSGPVKSLFGLSNKPVHTVQSLAQTLCLPSGARTILSASS 360
           +++IYAGLQNG +++FD+RQT+GP  S+ GL+  PVHTV  L+      S  RT+LSASS
Sbjct: 389 SHHIYAGLQNGMVLIFDMRQTTGPFASMTGLTTNPVHTVHHLSGNSTPTSDVRTLLSASS 448

Query: 361 GGICQWNID-SEAGPFVVPETDNQGVCISLAYCSSSDDIVGSYRPTFDMSMDVSHSQPLL 419
            G+CQWNI  SE  P +V ET N GVCIS +YC  S+ IV SYRP    S D   +QP L
Sbjct: 449 IGLCQWNISGSEGSPSLVSETGNPGVCISSSYCPRSNHIVASYRPRVGSSDDTVPTQPSL 508

Query: 420 TPSQVIG---QGVQGCHVLFKGMG-SHHFQKTGSTHADVSKSLLPKCVIIDMENQSR-LF 474
           T + V      GV G HV  K  G   ++QK  ST A V    LP+  IID   + + LF
Sbjct: 509 TQTGVSNSNSNGVDGFHVCHKRRGVDSYYQKLSSTQAIVDPIRLPRTAIIDFGGERKQLF 568

Query: 475 ASRDEVTNDLVLYELPSFRVHQQFKMPAQ--SRDVRYSTSHWA--LGCLSENSVQLF 527
           AS DE T +L+L +  +F + Q+  + +    +DV+Y   + +  LG L+++ +Q+ 
Sbjct: 569 ASCDESTRELILQDPSTFTISQRLPLSSHLPLQDVKYCHVNGSDLLGLLTDDRLQIL 625


>AT5G03750.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: Transducin/WD40 repeat-like superfamily protein
           (TAIR:AT5G03450.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:984796-985497 FORWARD
           LENGTH=169
          Length = 169

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 293 SCSWDLNSTNYIYAGLQNGSIMVFDLRQTSGPVKSLFGLSNKPVHTV 339
           SCSWDLN+ + +YAGLQNG ++VFD+RQ  GP+ SL  +++  VH V
Sbjct: 41  SCSWDLNNYHNVYAGLQNGMVLVFDMRQNRGPLVSLADVTSNSVHIV 87