Miyakogusa Predicted Gene

Lj1g3v4579450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4579450.1 Non Chatacterized Hit- tr|A5BK87|A5BK87_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,63.38,0.000000000000004,seg,NULL; WD-REPEAT DMWD-RELATED,NULL; WD
REPEAT PROTEIN,NULL,CUFF.32754.1
         (200 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37160.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   164   3e-41
AT3G53390.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   151   4e-37
AT2G37160.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...   149   2e-36

>AT2G37160.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr2:15609047-15612529 FORWARD LENGTH=544
          Length = 544

 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 95/168 (56%), Positives = 104/168 (61%), Gaps = 2/168 (1%)

Query: 1   MMNTANGMVSPSSTSAGNNNNAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVT 60
           MMNT+NGM+S  S+S+ +  N QSPG+KTYFKTPEG+YKL YEKTHPSGLLHY HGKTVT
Sbjct: 1   MMNTSNGMISGPSSSSASAANPQSPGIKTYFKTPEGKYKLHYEKTHPSGLLHYTHGKTVT 60

Query: 61  QVTLAHLKDKXXXXXXXXXXXXXXXXXXXXXXXXXXLLGGSNGSRALSFVXXXXXXXXXX 120
           QVTLAHLKDK                          LLGG NG+RALSFV          
Sbjct: 61  QVTLAHLKDK-PAPSTPTGTSSSSTASSGFRSATARLLGGGNGNRALSFVGGNGGAKNVG 119

Query: 121 XXXXXXXXXXXXXXXXVA-NPNFDGKGTYLIFNVGDAIFISDLNSQDK 167
                            A N NFDGKGTYL+FNVGDAIFISDLNSQDK
Sbjct: 120 ASSRIGASFAASSSNTSATNTNFDGKGTYLVFNVGDAIFISDLNSQDK 167


>AT3G53390.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:19792781-19796428 FORWARD LENGTH=558
          Length = 558

 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 99/168 (58%), Gaps = 2/168 (1%)

Query: 1   MMNTANGMVSPSSTSAGNNNNAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVT 60
           MMNT+NGM+S  S+S+    N QSPG+KTYFKTPEG+YKL YEKTH SGLLHYAHGKTVT
Sbjct: 1   MMNTSNGMISAPSSSSSPAANPQSPGIKTYFKTPEGKYKLHYEKTHSSGLLHYAHGKTVT 60

Query: 61  QVTLAHLKDKXXXXXXXXXXXXXXXXXXXXXXXXXXLLGGSNGSRALSFVXXXXXXXXXX 120
           QVT+A LK++                          LLG  NGSRALSFV          
Sbjct: 61  QVTIAQLKER-AAPSTPTGTSSGYSASSGFRSATARLLGTGNGSRALSFVGGNGGGKSVS 119

Query: 121 XXXXXXXX-XXXXXXXXVANPNFDGKGTYLIFNVGDAIFISDLNSQDK 167
                            + N NFDGKGTYL+FNV DAIFI DLNSQ+K
Sbjct: 120 TSSRISGSFAASNSNTSMTNTNFDGKGTYLVFNVSDAIFICDLNSQEK 167


>AT2G37160.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr2:15609047-15612529 FORWARD LENGTH=573
          Length = 573

 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/197 (48%), Positives = 104/197 (52%), Gaps = 31/197 (15%)

Query: 1   MMNTANGMVSPSSTSAGNNNNAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVT 60
           MMNT+NGM+S  S+S+ +  N QSPG+KTYFKTPEG+YKL YEKTHPSGLLHY HGKTVT
Sbjct: 1   MMNTSNGMISGPSSSSASAANPQSPGIKTYFKTPEGKYKLHYEKTHPSGLLHYTHGKTVT 60

Query: 61  -----------------------------QVTLAHLKDKXXXXXXXXXXXXXXXXXXXXX 91
                                        QVTLAHLKDK                     
Sbjct: 61  QVLCKNIKCTFHFYVLKVVSENGFVKFWCQVTLAHLKDK-PAPSTPTGTSSSSTASSGFR 119

Query: 92  XXXXXLLGGSNGSRALSFVXXXXXXXXXXXXXXXXXXXXXXXXXXVA-NPNFDGKGTYLI 150
                LLGG NG+RALSFV                           A N NFDGKGTYL+
Sbjct: 120 SATARLLGGGNGNRALSFVGGNGGAKNVGASSRIGASFAASSSNTSATNTNFDGKGTYLV 179

Query: 151 FNVGDAIFISDLNSQDK 167
           FNVGDAIFISDLNSQDK
Sbjct: 180 FNVGDAIFISDLNSQDK 196