Miyakogusa Predicted Gene

Lj1g3v4579280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4579280.1 Non Chatacterized Hit- tr|C6T846|C6T846_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.36120
PE,28.97,3e-18,seg,NULL; DUF1685,Protein of unknown function
DUF1685,CUFF.32729.1
         (277 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42760.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...    65   4e-11

>AT2G42760.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF1685
           (InterPro:IPR012881); Has 170 Blast hits to 164 proteins
           in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26;
           Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes
           - 26 (source: NCBI BLink). | chr2:17796382-17797185
           REVERSE LENGTH=267
          Length = 267

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 21/139 (15%)

Query: 146 KSMSCRTLGELELDEVKGFMDLGFMFKK-EYISPRMISVLPGLQRLGLHQKKEEKQVMDD 204
           ++   +++ +LE +E+KGFMDLGF+F + ++    ++S+LPGLQRL          V  D
Sbjct: 140 RTRKGKSMSDLEYEELKGFMDLGFVFSEDDHKDSDLVSILPGLQRL----------VKKD 189

Query: 205 DDATAMVQVQGLDIEAEEKKRDITRPYLSEAW------LIKRPDSPLLNLKVPKHCSAD- 257
           D  T   + +  + +    +    RPYLSEAW        K+  +P +  +VP   +A  
Sbjct: 190 DGVTKEEEEEEEEDKIGGNR--AARPYLSEAWDHCGGRKGKKQITPEIKWRVPAPAAASE 247

Query: 258 -NMKKHLKFWAKTVASEIQ 275
            ++K +L+ WA  VAS I+
Sbjct: 248 VDLKDNLRLWAHAVASTIR 266