Miyakogusa Predicted Gene

Lj1g3v4579180.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4579180.1 Non Chatacterized Hit- tr|B6T001|B6T001_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,29.8,0.000003,seg,NULL,CUFF.32721.1
         (312 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37100.1 | Symbols:  | protamine P1 family protein | chr2:155...   112   4e-25
AT5G03110.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   100   2e-21

>AT2G37100.1 | Symbols:  | protamine P1 family protein |
           chr2:15591147-15592040 FORWARD LENGTH=297
          Length = 297

 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 121/333 (36%), Positives = 152/333 (45%), Gaps = 73/333 (21%)

Query: 1   MKKLSARAISSSPARTDKFPPPLMMRFLRTNAGXXXXXXXXXXXXPMFLRKKNTTTTVET 60
           M+  S+R +SS P RT+   PPL+MRFLRT +             P+F R+KN +   ET
Sbjct: 1   MRFSSSRPVSS-PGRTEN--PPLLMRFLRTKS---RSRSRSRSRRPIFFRRKNASAAAET 54

Query: 61  QEPSSPKVTCMGQVRAKRSSKSTPPKRETRASSATPC-------RCWWIRKPNNPCRC-- 111
           QEP+SPKVTCMGQVR  RS K   PK ET   S           RC W+ K   PC    
Sbjct: 55  QEPTSPKVTCMGQVRINRSKK---PKPETARVSGGATERRRQSRRCGWV-KNAFPCHSFT 110

Query: 112 --------RPVWPKWAFFRRKSTKLKEENSAKSESN--FQGRS-------------FEEE 148
                    PVW KW  F   S   K E  + S  +    GRS               +E
Sbjct: 111 GIIKPTCFSPVWRKWKSFSHASFSKKSEKRSSSSRSEPIFGRSTVEPEEPEETRKEENQE 170

Query: 149 SRMSTCDNVPFASISSTPPRNALLLTRCRSAPFRSSSLASKFWXXXXXXXXXXXXXXXXX 208
              S+C      S ++TPPRNA LLTRCRSAP+RS S A+  +                 
Sbjct: 171 EEASSCK-----SFTATPPRNAFLLTRCRSAPYRSPSSANSLF-----------EDQEET 214

Query: 209 XKPVSVRHSVSE----SEAKRVSESETKMEFFKELEDSLLRQGITASITNNSEGNSASRS 264
            K    RH+ SE    SE  + S +ET     + LEDS  R+   AS         + R 
Sbjct: 215 NKAPFQRHASSENVSVSEEPKTSVTETT----ERLEDS--RRESAASEEPKRSVLGSPRQ 268

Query: 265 PVVLTRCKSEPANRGLRIDPEVNNLWKKRRLGF 297
            ++LTRC SEPA    R+ PE+    +  RLGF
Sbjct: 269 CLILTRCNSEPA----RLVPEM-GYRQNPRLGF 296


>AT5G03110.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane; BEST Arabidopsis thaliana protein match
           is: protamine P1 family protein (TAIR:AT2G37100.1); Has
           81 Blast hits to 73 proteins in 9 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr5:730346-731197 FORWARD LENGTH=283
          Length = 283

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 103/201 (51%), Gaps = 25/201 (12%)

Query: 11  SSPARTDKFPPPLMMRFLRTNAGXXXXXXXXXX------XXPMFLRKKNTTTTVETQEPS 64
           SSP R +K+PPP M  FLR+ +                   P+F+R+  +   V  QEPS
Sbjct: 9   SSPGRVEKYPPPFMG-FLRSKSNGGSTSRSRSRSRGRSRASPLFVRRNKSAAAV-AQEPS 66

Query: 65  SPKVTCMGQVRAKRSSKSTPPKRETRASSATPCRCWWIR------KPNNPCRCRPVWPKW 118
           SPKVTCMGQVR  RS     P  E+R  + T  RC W+R      K     +    WPKW
Sbjct: 67  SPKVTCMGQVRVNRSKPKIKP--ESR-DNPTRRRCEWLRNASFYNKFAGKIKTMTFWPKW 123

Query: 119 AF--FRRKSTKLKEENSAKSESNF----QGRSFEEESRMSTCDNVP--FASISSTPPRNA 170
               F      LKE++S +S+ +       R  +EE        +P  F S ++TPP NA
Sbjct: 124 RLCSFSCACRNLKEKDSPRSQLDHPTTESVREIKEEIEGEENFEIPKLFVSPATTPPINA 183

Query: 171 LLLTRCRSAPFRSSSLASKFW 191
           LLLTR RSAP+RSSSLA +FW
Sbjct: 184 LLLTRSRSAPYRSSSLAFRFW 204