Miyakogusa Predicted Gene

Lj1g3v4578910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4578910.1 Non Chatacterized Hit- tr|B8LP65|B8LP65_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,47.37,3e-16,seg,NULL,CUFF.32697.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53470.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   112   8e-26
AT3G53470.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   112   1e-25

>AT3G53470.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; Has 35
           Blast hits to 35 proteins in 13 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr3:19822813-19823298 FORWARD LENGTH=136
          Length = 136

 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 52/67 (77%), Positives = 60/67 (89%)

Query: 71  WDKAWKNFKKQGRKTLFSQFSPDKYVSWNPRRTDFPLSEEVDPIKRTERSNLNLWTSPTF 130
           WDKAWKNFKKQ +K+LFSQF+ DKYV+WNP R++F LSEEVDPIKRTERSNL LWTSP F
Sbjct: 55  WDKAWKNFKKQSKKSLFSQFNVDKYVTWNPPRSEFDLSEEVDPIKRTERSNLMLWTSPRF 114

Query: 131 TLGGAVI 137
           TL GA++
Sbjct: 115 TLVGAIV 121


>AT3G53470.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; Has 35
           Blast hits to 35 proteins in 13 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr3:19822813-19823298 FORWARD LENGTH=135
          Length = 135

 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/67 (77%), Positives = 60/67 (89%)

Query: 71  WDKAWKNFKKQGRKTLFSQFSPDKYVSWNPRRTDFPLSEEVDPIKRTERSNLNLWTSPTF 130
           WDKAWKNFKKQ +K+LFSQF+ DKYV+WNP R++F LSEEVDPIKRTERSNL LWTSP F
Sbjct: 54  WDKAWKNFKKQSKKSLFSQFNVDKYVTWNPPRSEFDLSEEVDPIKRTERSNLMLWTSPRF 113

Query: 131 TLGGAVI 137
           TL GA++
Sbjct: 114 TLVGAIV 120