Miyakogusa Predicted Gene

Lj1g3v4578800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4578800.1 Non Chatacterized Hit- tr|F6HHA9|F6HHA9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,69.65,0,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL;
Ribonuclease H-like,Ribonuclease H-like domain; C2H2,CUFF.32685.1
         (1206 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...   839   0.0  
AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...    81   4e-15

>AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
            domain | chr3:14321838-14323928 FORWARD LENGTH=696
          Length = 696

 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/690 (56%), Positives = 500/690 (72%), Gaps = 36/690 (5%)

Query: 514  SEPLHSNQLITSQGHYEIVSAQTIPSYEIVNAETLLNNEEHTPDTQPNKRRKKKSIVWQH 573
            ++P+    L       EI S +T P  E    E   + E  +P+TQP KRRKKKS+VW+H
Sbjct: 15   TQPIKETALEVYNDTAEIRSPETQPIEETA-LEVYNDTEMVSPETQPIKRRKKKSMVWEH 73

Query: 574  FTIETVGDGCRRAYCNECKQSFAYSTGSKVAGTSHLKRHIAKGACPTLLRNQD----PNQ 629
            FTIE V   CRRA+C  C QSFAYS G+KVAGTSHLKRHI KG CP L+   D    P  
Sbjct: 74   FTIEAVEPNCRRAFCKGCNQSFAYSNGNKVAGTSHLKRHIFKGTCPALIHTHDNDNNPLM 133

Query: 630  ETPYTPHQKGDVVLRGGGASVTSTPKRRYRSP--STPYIIFDQDRCRHEIAKMVIMHDYP 687
             TPYTP               T TP+RRYRS   ++PY+ F+QD+CR EIAKM+IMHDYP
Sbjct: 134  STPYTPK--------------TDTPRRRYRSQNNASPYVAFNQDKCRQEIAKMIIMHDYP 179

Query: 688  LHMVEHPGFVAFVKNLQPQFNMVSFNTVQGDCVAAYLNGRSFLVKYFRGLPGRVCLTLDV 747
            LHMV+HPGFV+FV+++QP F+ VSFN VQGDCVA YL  +  ++K   G+PGR CLTLD 
Sbjct: 180  LHMVQHPGFVSFVQSIQPHFDAVSFNNVQGDCVATYLAEKQNVMKSLEGIPGRFCLTLDF 239

Query: 748  WSSSQSVGYVLITGHFSDSDWKLHRRVLNVVMEPYPDSDTAISHAVAACIMDWNLQGRMF 807
            W+S  ++GYV IT H+ DSDWK+ +++LNV+ME YP++D A+S AVA C+ +W L+G++F
Sbjct: 240  WTSKLTLGYVFITAHYIDSDWKIQKKLLNVLMESYPEADEALSLAVANCVSEWGLEGKLF 299

Query: 808  SITCNQALTEVSLENLRPLLSVKNPLILNGQLLIGNCIARTLSNVANDLLSLAQDIVSKI 867
            ++T N   +  ++EN+RP L +KNP IL+GQL+IGNC+ART  ++A D+L   +D++  I
Sbjct: 300  NVTFNHPASNSAVENIRPQLCIKNPGILDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNI 359

Query: 868  RDSVKYVKTSYIHEDKFLELKQQLQVPSERSLFIDDLTKWNTTYEMLVAASELKEVFSCL 927
            RDSVK+VKTS  HE++F ELK+QLQVPSE+ L +DD T+WNTTY MLVAASELKEVFSCL
Sbjct: 360  RDSVKHVKTSESHEERFTELKEQLQVPSEKVLSLDDQTQWNTTYMMLVAASELKEVFSCL 419

Query: 928  DTYDPDYKGAPSIQDWKLVETLCTYLKPLFDAANILLTTTHPAIITCFHEVWKMQLDLAR 987
            DT DPDYK  PS +DW+ VE LCT+LKPLF+A + L +T +P+ +T FHEVWK Q DL+R
Sbjct: 420  DTADPDYKKPPSAEDWRHVEALCTFLKPLFEAVSTLQSTGNPSAVTFFHEVWKTQSDLSR 479

Query: 988  AAMNEDPFISNLTKPMQERIGKYWRDCSLILATAVVMDPRFKMKLVEFSFTKIYGKDAHV 1047
            A   EDPF++ + K MQE++ KYWRDCSL+LA AVVMDPRFKMKLVEFSF+KI+G+DA  
Sbjct: 480  AIAGEDPFVTGIAKTMQEKVDKYWRDCSLVLAMAVVMDPRFKMKLVEFSFSKIFGEDAGK 539

Query: 1048 HVKIVNDGIHELFHEYVNYPLPLTAAYAEGDAGSLIGESQXXXXXXXXXXXXFDAYIMET 1107
            ++K V+DGIHELF EY+  P P       G A  L                 FD YIMET
Sbjct: 540  NIKTVDDGIHELFTEYMALPSPQNTTSEGGKADGL---------------SDFDTYIMET 584

Query: 1108 SSQQMKSELDQYLEESLLPRVPDFDVLGWWKINKVKYPTLSKMARDILSIPVSTVPSESF 1167
            + Q +KSELDQYL+E+LLPRV +FDVL WWK NK+KYPTLSKMARDILSIPVS    +  
Sbjct: 585  TGQNLKSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYV 644

Query: 1168 FDRKSKEMDQYRSSLRPEAVEALVCTKDWM 1197
            FD + +EMD+Y++SLRPE VEAL+C ++W+
Sbjct: 645  FDMEPREMDEYKTSLRPETVEALICAREWL 674


>AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr1:6385614-6388005 FORWARD LENGTH=690
          Length = 690

 Score = 81.3 bits (199), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 156/361 (43%), Gaps = 38/361 (10%)

Query: 560 PNKRRKKKSIVWQHFTIETVGDGCRRAYCNECKQSFAYSTGSKVAGTSHLKRHIAKGACP 619
           P KR+K  + V+  +  ET  D   R  C  C QS++ +T      T +L RH       
Sbjct: 46  PPKRKKTMTSVYLKY-FETAPDSKTRK-CKFCGQSYSIATA-----TGNLGRH------- 91

Query: 620 TLLRNQDPNQETPYTPHQKGDVVLRGGGASVTSTPKRRYRSPSTPYII--FDQDRCRHEI 677
             L N+ P  +         DVV     +SV  TP    +   +   +   D D     +
Sbjct: 92  --LTNRHPGYD-----KAAADVVT---SSSVPQTPPAVVKPSQSQSKVPQLDYDHLNWLV 141

Query: 678 AKMVIMHDYPLHMVEHPGFVAFVKNLQPQFNMVSFNTVQGDCVAAYLNGRSFLVKYFRGL 737
            K + +   P   V+        K L+P   +      +      + + R  +      +
Sbjct: 142 LKWLALSSLPPSTVDETWLGNSFKFLKPSIQLWPAEKYKAILDEVFTSMRGDVKTTLEHI 201

Query: 738 PGRVCLTLDVWSSSQSVGYVLITGHFSDSDWKLHRRVLNVVMEPYPDSDTAISHAVAACI 797
             +V +TL  W+S +++ Y+ +TG + D +W  HR +L++   PYP   + I +++   +
Sbjct: 202 QSKVSVTLSFWNSYENIFYMSVTGQWIDENWSSHRLLLDICRIPYPSGGSEIYNSLLKVL 261

Query: 798 MDWNLQGRMFSITCNQALTEVSLENLRPLLSVKNPLILNGQLLIGNCI----ARTLSNVA 853
             + ++ R+  + C    +E ++     L         +GQ ++  C     A+TL+++ 
Sbjct: 262 KTYAIEDRI--LCCTHDNSENAIHACHSLKEY-----FDGQKVLPFCYIPCAAQTLNDII 314

Query: 854 NDLLSLAQDIVSKIRDSVKYVKTSYIHEDKFLELKQQLQVPSERSLFIDDLTKWNTTYEM 913
           ++ L+  + I+SK+R+  + +  S    D F++L    Q  + + L ID  ++W+  Y+M
Sbjct: 315 DEGLATIKPIISKVREFTQELNASTELSDDFIQLTTAYQEGNWK-LPIDASSRWSGNYQM 373

Query: 914 L 914
           +
Sbjct: 374 V 374



 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 1115 ELDQYLEESLLPRVPDFDVLGWWKINKVKYPTLSKMARDILSIPVSTVPSESFFDRKSKE 1174
            EL QYL ES++P     DVL WWK+N  +YP LS MARD L++  ++   E  F  K +E
Sbjct: 569  ELTQYLSESIVPM--QTDVLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEE 626

Query: 1175 MDQYRSSLRPEAVEALVCTKDWMQ 1198
            +D+ +  +  ++ ++++C + W++
Sbjct: 627  IDKQKYCMPHDSTQSVICIRSWIE 650