Miyakogusa Predicted Gene

Lj1g3v4578720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4578720.1 tr|I0YSF8|I0YSF8_9CHLO Alternative oxidase
OS=Coccomyxa subellipsoidea C-169 PE=3
SV=1,26.61,0.00000001,seg,NULL,CUFF.32676.1
         (216 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53490.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   195   2e-50
AT5G02720.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    99   2e-21

>AT3G53490.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to
           70 proteins in 13 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:19832666-19834024 FORWARD LENGTH=225
          Length = 225

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/198 (50%), Positives = 125/198 (63%), Gaps = 4/198 (2%)

Query: 21  FTNSPGXXXXXXXXXXXXEIFTTHEWLRATPSVYFRCTGDNKTVLPDIKKPHVLYTFKGE 80
           F++ PG            +IFTTH+W    P+V+F+C G+NKTVLPD+K+ +V Y+F GE
Sbjct: 22  FSSLPGTILTQEVTLDSVQIFTTHDWFSTKPTVFFQCKGENKTVLPDVKRTNVSYSFNGE 81

Query: 81  ESWQPLTDFPSKKCKRCGLYEKDPILSDDVFDEWELCPSDFAAPDGKYSLFKEKEFNATF 140
           ESWQPLT+    KCKRCG+YE DP L  D FDEWELCPSDF A +G Y  FKEKEFNATF
Sbjct: 82  ESWQPLTELQGTKCKRCGIYEDDP-LKYDTFDEWELCPSDFTA-EGSYKRFKEKEFNATF 139

Query: 141 LCPECLTLPGVAV--PAPEGNRDKKGMNXXXXXXXXXXXXXXXXXXMMGAYKYWQKKKRE 198
           LC  C  +   +      E    K GM+                  ++  YKYW+KKKR+
Sbjct: 140 LCHGCSQVGAGSNKESGTEKEEQKGGMHPGIVVLIVVLLLGVVAVGLLVGYKYWRKKKRQ 199

Query: 199 QDQARFLKLFEEGDDLED 216
           Q+QARFLKLFE+GDD+ED
Sbjct: 200 QEQARFLKLFEDGDDIED 217


>AT5G02720.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G53490.1); Has 47 Blast hits to 47 proteins in
           13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr5:613782-614313 REVERSE
           LENGTH=138
          Length = 138

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 9/135 (6%)

Query: 86  LTDFPSKKCKRCGLYEKDPILSDDVFDEWELCPSDFAAPDGKYSLFKEKEFNATFLCPEC 145
           +T    +KCKRCG+YE+  ++SD  FD WE+CP+DF+A    Y  FKEKE NATF+C  C
Sbjct: 1   MTGIGGEKCKRCGIYEQGSLVSDKEFDVWEVCPTDFSASQ-VYMHFKEKEINATFVCHGC 59

Query: 146 LTL-PGVAVPAPEGNRDKKGMNXXXXXXXXXXXXXXXXXXMMGA---YKYWQKKKREQDQ 201
                 VA  +P+    ++G N                  ++G    +K+ Q+ K+++DQ
Sbjct: 60  AKFHSAVAASSPQ----EEGYNGLTFMIAIIAGVLCTTLVVVGGVFMFKHTQRMKKQRDQ 115

Query: 202 ARFLKLFEEGDDLED 216
           ARF++LFEE D+ ED
Sbjct: 116 ARFMQLFEESDEPED 130