Miyakogusa Predicted Gene

Lj1g3v4552380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4552380.1 tr|B9HBE4|B9HBE4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_560728 PE=4
SV=1,43.75,5e-18,seg,NULL,CUFF.32639.1
         (252 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37480.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    56   2e-08
AT2G37480.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...    56   2e-08
AT3G53670.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    56   2e-08
AT3G53670.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    56   2e-08

>AT2G37480.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G53670.2); Has 186 Blast hits to 186 proteins
           in 35 species: Archae - 0; Bacteria - 2; Metazoa - 14;
           Fungi - 7; Plants - 154; Viruses - 0; Other Eukaryotes -
           9 (source: NCBI BLink). | chr2:15738645-15739579 FORWARD
           LENGTH=194
          Length = 194

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 29/39 (74%)

Query: 116 LIPALKGSREKYRGSPMKLTVKWAPDVYDPVPTLMSHTV 154
           LIPA+KGSREKY  S  K +V W  DVYDP P++ SHTV
Sbjct: 91  LIPAIKGSREKYGLSLRKSSVSWGADVYDPPPSIASHTV 129


>AT2G37480.2 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G53670.2); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr2:15738645-15739579 FORWARD LENGTH=193
          Length = 193

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 29/39 (74%)

Query: 116 LIPALKGSREKYRGSPMKLTVKWAPDVYDPVPTLMSHTV 154
           LIPA+KGSREKY  S  K +V W  DVYDP P++ SHTV
Sbjct: 90  LIPAIKGSREKYGLSLRKSSVSWGADVYDPPPSIASHTV 128


>AT3G53670.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: sperm cell,
           male gametophyte, pollen tube; EXPRESSED DURING: L
           mature pollen stage, M germinated pollen stage; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT2G37480.1). | chr3:19891104-19892214 FORWARD
           LENGTH=203
          Length = 203

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 30/38 (78%)

Query: 116 LIPALKGSREKYRGSPMKLTVKWAPDVYDPVPTLMSHT 153
           LIPA+KG REK+  S  KL+V WA DVYDP P+++SHT
Sbjct: 102 LIPAIKGGREKHGKSLEKLSVSWAEDVYDPPPSIVSHT 139


>AT3G53670.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G37480.1); Has 176 Blast hits to 173 proteins
           in 30 species: Archae - 0; Bacteria - 0; Metazoa - 8;
           Fungi - 13; Plants - 154; Viruses - 0; Other Eukaryotes
           - 1 (source: NCBI BLink). | chr3:19891104-19892214
           FORWARD LENGTH=203
          Length = 203

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 30/38 (78%)

Query: 116 LIPALKGSREKYRGSPMKLTVKWAPDVYDPVPTLMSHT 153
           LIPA+KG REK+  S  KL+V WA DVYDP P+++SHT
Sbjct: 102 LIPAIKGGREKHGKSLEKLSVSWAEDVYDPPPSIVSHT 139