Miyakogusa Predicted Gene

Lj1g3v4551350.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4551350.1 tr|Q6ZNE1|Q6ZNE1_HUMAN cDNA FLJ16186 fis, clone
BRTHA2007060, moderately similar to EUKARYOTIC TRANS,87.86,0,seg,NULL;
coiled-coil,NULL; PCI,Proteasome component (PCI) domain; SUBFAMILY NOT
NAMED,NULL; EUKARYO,CUFF.32634.1
         (960 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11420.1 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3...  1004   0.0  

>AT4G11420.1 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1
           | eukaryotic translation initiation factor 3A |
           chr4:6947834-6952053 REVERSE LENGTH=987
          Length = 987

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/799 (63%), Positives = 586/799 (73%)

Query: 1   MTSFLKPENALKRAEELINVGQKQDALQTLHDVITSKRYRAWQKTLERIMFKYVELCVEL 60
           M +F KPENALKRA+ELINVGQKQDALQ LHD+ITSKRYRAWQK LE+IMFKY++LCV+L
Sbjct: 1   MANFAKPENALKRADELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYLDLCVDL 60

Query: 61  RKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQXXXXXXXXXXXX 120
           ++GRFAKDGLIQYRI+CQQVNVSSLEEVIKHF+HL+T+KAEQARSQA             
Sbjct: 61  KRGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFLHLATDKAEQARSQADALEEALDVDDLE 120

Query: 121 XXKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180
             ++PEDL LS VSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH
Sbjct: 121 ADRKPEDLQLSIVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180

Query: 181 RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSIPESLQLYLDTRFEQLKI 240
           +AFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLS PESLQLYLDTRF+QLK+
Sbjct: 181 KAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFDQLKV 240

Query: 241 ATELELWQEAFRSVEDIHGLMCMVKKVPKASLMAIYYVKLTEIFWVSSSHLYHAYAWFRL 300
           ATEL LWQEAFRSVEDI+GLMCMVKK PK+SL+ +YY KLTEIFW+SSSHLYHAYAWF+L
Sbjct: 241 ATELGLWQEAFRSVEDIYGLMCMVKKTPKSSLLMVYYSKLTEIFWISSSHLYHAYAWFKL 300

Query: 301 FLLQKSFNKNLSQKDLQXXXXXXXXXXXXXPPHDHTHGASHLELEHEKERNLRMSNLIGF 360
           F LQK+FNKNLSQKDLQ             PP D    ASH+ELE+EKERNLRM+NLIGF
Sbjct: 301 FSLQKNFNKNLSQKDLQLIASSVVLAALSIPPFDRAQSASHMELENEKERNLRMANLIGF 360

Query: 361 NLENKPXXXXXXXXXXXXXXXXXKGVMSCVTQEVKDIHYLLEHEFLPSDLAQKVLPLLTK 420
           NLE K                  KGV+SC +QEVKD+ ++LEHEF P DL  K+ PLL K
Sbjct: 361 NLEPKFEGKDMLSRSALLSELVSKGVLSCASQEVKDLFHVLEHEFHPLDLGSKIQPLLEK 420

Query: 421 FSKLGGKLSTASSIPEVHLSQYVPALEKLATLRLLQQVSNVYQTMKIETLSGMIPFFEFS 480
            SK GGKLS+A S+PEV LSQYVP+LEKLATLRLLQQVS +YQT++IE+LS ++PFF+FS
Sbjct: 421 ISKSGGKLSSAPSLPEVQLSQYVPSLEKLATLRLLQQVSKIYQTIRIESLSQLVPFFQFS 480

Query: 481 VVEKISVDAVKQKFVSMKVDHMKNVVIFCKMSLESDGLRDHLANFAERLNKARQMIYPPD 540
            VEKISVDAVK  FV+MKVDHMK VVIF  + +ESDGLRDHLA FAE L+K R M+YP  
Sbjct: 481 EVEKISVDAVKNNFVAMKVDHMKGVVIFGNLGIESDGLRDHLAVFAESLSKVRAMLYPVP 540

Query: 541 RKPSKLGALLPTLTEVVAKEHKRLLARKSIIXXXXXXXXXXXXXXXXXXXXXXXXXXXIT 600
            K SKL  ++P L + V KEHKRLLARKSII                           +T
Sbjct: 541 SKASKLAGVIPNLADTVEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLT 600

Query: 601 EEAEQRRLATEYEQRKXXXXXXXXXXXXXXXXXXXXXXXXKRIKKRGKKPMIEGEKIXXX 660
           EEAEQ+RLA E  +R+                        KR+KK  KKP+++GEK+   
Sbjct: 601 EEAEQKRLAAELAERRKQRILREIEEKELEEAQALLEETEKRMKKGKKKPLLDGEKVTKQ 660

Query: 661 XXXXXXXXXXXXXXXXMEKKLQKLAKTMDHLERAKREEAAPLIEAAYQXXXXXXXXXXXX 720
                           MEKKLQKLAKTMD+LERAKREEAAPLIEAAYQ            
Sbjct: 661 SVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYER 720

Query: 721 XXXXXVEVSRQRHEGDLIEKERLSRMMGSKEIYQERVVNQRQAXXXXXXXXXXXXXSKIL 780
                VE+S++RHE DL EK RLSRM+G+KEI+Q +V+++RQA             SKI+
Sbjct: 721 EQQREVELSKERHESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERISKII 780

Query: 781 QTRRQDREKARKLKYYLQV 799
           + ++Q+R+  RK  YYL++
Sbjct: 781 REKKQERDIKRKQIYYLKI 799