Miyakogusa Predicted Gene

Lj1g3v4551280.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4551280.1 CUFF.32641.1
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37530.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    99   8e-22
AT1G07795.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    76   5e-15
AT2G28725.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    72   1e-13

>AT2G37530.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G07795.1); Has 39 Blast hits to 39 proteins in
           11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr2:15751060-15751428 FORWARD
           LENGTH=122
          Length = 122

 Score = 98.6 bits (244), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 6/118 (5%)

Query: 5   LSELFHWRLTTPWPILAYAATWMTLLTVTVAVASISPQVAFVTGVSPSSS--FSQKCRAD 62
           L+  F WR+    P   Y ATW   LT+TVA+ S++P+ AFV+ + PSSS  FS++C + 
Sbjct: 9   LTHRFAWRI----PHFVYGATWTLFLTLTVAIISLAPEFAFVSAIFPSSSEVFSRRCGSY 64

Query: 63  GSIRIPLDLPGEILCFPASMFMKSKIDLILPPXXXXXXXXXXXXXXXXXGLREHDQTH 120
            +I +PLDLP E+LC PA++F +SK+DL++PP                 GL E D+ H
Sbjct: 65  AAILVPLDLPSEVLCLPANLFRRSKMDLVVPPVFAAIVVALSAVVVRTMGLWEADEAH 122


>AT1G07795.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT2G28725.1); Has 38 Blast hits to 38 proteins in
          11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr1:2414438-2414794 FORWARD
          LENGTH=118
          Length = 118

 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 5  LSELFHWRLTTPWPILAYAATWMTLLTVTVAVASISPQVAFVTGVSPSSSFSQKCRADGS 64
          L E F   ++  WP++A AATW  LL  TVAVAS +P++AFV+ VS S         DG 
Sbjct: 8  LMEPFLRSVSDRWPVIAQAATWTVLLMFTVAVASFAPEMAFVSTVSSSCG-----GGDGF 62

Query: 65 IRIPLDLPGEILCFPASMFMKSKIDLILP 93
          ++IP+D  GE +C P++M  +S+ DL +P
Sbjct: 63 VKIPMDFAGESICVPSNMVKRSRFDLFVP 91


>AT2G28725.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT1G07795.1); Has 35 Blast hits to 35 proteins in
          10 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr2:12328605-12328943
          FORWARD LENGTH=112
          Length = 112

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 8/82 (9%)

Query: 12 RLTTPWPILAYAATWMTLLTVTVAVASISPQVAFVTGVSPSSSFSQKCRADGSIRIPLDL 71
          + +T W +L   ATW  LL +TVA+AS +P++AFV+ +  SS        DG +RIP+DL
Sbjct: 7  KTSTRWEVLVQTATWTILLMITVALASFAPEMAFVSKLKSSS--------DGFVRIPMDL 58

Query: 72 PGEILCFPASMFMKSKIDLILP 93
          PGE+L  P+ M   S +D+ LP
Sbjct: 59 PGEMLILPSEMVKNSYLDVFLP 80