Miyakogusa Predicted Gene

Lj1g3v4538890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4538890.1 tr|G7KZK3|G7KZK3_MEDTR CLIP-associating protein
OS=Medicago truncatula GN=MTR_7g099480 PE=4 SV=1,85.66,0,ARM
repeat,Armadillo-type fold; no description,Armadillo-like helical;
CLASP_N,CLASP N-terminal doma,CUFF.32613.1
         (503 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20190.1 | Symbols: ATCLASP, CLASP | CLIP-associated protein ...   653   0.0  

>AT2G20190.1 | Symbols: ATCLASP, CLASP | CLIP-associated protein |
            chr2:8711862-8718813 REVERSE LENGTH=1439
          Length = 1439

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/497 (64%), Positives = 397/497 (79%), Gaps = 4/497 (0%)

Query: 1    MNHNTDKQYFDALYRDGNFRDSHNSYVPNFQRPLLRKNVAGRMSAGRRRSFDENQLSLGE 60
            M  + D+Q  D  YRD  FR+S+ S+VPNFQRPLLRKNV GRMSAGRRRSFD++QL +G+
Sbjct: 722  MAGHFDRQQMDTAYRDLTFRESNASHVPNFQRPLLRKNVGGRMSAGRRRSFDDSQLQIGD 781

Query: 61   MSSYADGPTSLHEALSEGLRSGSDWSARVAAFNYVHSLLQQGPKGTIEVVQNFEKVMKLF 120
            +S++ DGP SL+EAL++GL S SDW ARVAAFN++ +LLQQGPKG  EV+Q+FEKVMKLF
Sbjct: 782  ISNFVDGPASLNEALNDGLNSSSDWCARVAAFNFLQTLLQQGPKGAQEVIQSFEKVMKLF 841

Query: 121  FQHLDDPHHKVAQAALSTLADIVPACRKPFEGYMERILPHVFSRLIDPKELVRQPCSTTL 180
             +HLDDPHHKVAQAALSTLAD++P+CRKPFE YMER+LPHVFSRLIDPKE+VRQPCS+TL
Sbjct: 842  LRHLDDPHHKVAQAALSTLADLIPSCRKPFESYMERVLPHVFSRLIDPKEVVRQPCSSTL 901

Query: 181  EVVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSFNKHAMNAEGAGNIGILKLWL 240
            E+VSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAI+SFN++A N E +GN GILKLWL
Sbjct: 902  EIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNRYAGNPEISGNSGILKLWL 961

Query: 241  AKLTPLVYDKNTKLKEAAITCIISVYSHFDSAAVLNFILSLSVEEQNSLRRALKQYTPRI 300
            AKLTPL  DKNTKLKEA+ITCIISVY+H+DSA +LN+ILSLSVEEQNSLRRALKQYTPRI
Sbjct: 962  AKLTPLTRDKNTKLKEASITCIISVYNHYDSAGLLNYILSLSVEEQNSLRRALKQYTPRI 1021

Query: 301  EVDLMNYLQSKKERQRSKASYDPSDVVGTSSDDGHVGFSRKAHYLGRYSVGSLDSDGGRK 360
            EVDL+NY+QSKKE+QR K SYDPSD +GTSS++G+ G S+K  +LGRYS GS+DSD GRK
Sbjct: 1022 EVDLLNYMQSKKEKQRIK-SYDPSDAIGTSSEEGYAGASKKNIFLGRYSGGSIDSDSGRK 1080

Query: 361  W-SSQDSMLMKASLGQASSIETQEHPNHNIEADANSGCHGSKTEDLAYSVYPRGQNFSAQ 419
            W SSQ+  ++   +GQ  S  TQE    N+    +S       +D  Y+    GQN  ++
Sbjct: 1081 WSSSQEPTMITGGVGQNVSSGTQEKLYQNVRTGISSASDLLNPKDSDYTFASAGQNSISR 1140

Query: 420  TSQLGHVDSSMNFEGLSTPRLDVNSVMSLDHLNASEGYVHDKEHPSEVELNHHSVEAVNI 479
            TS  G  ++    + LS P L+ N  ++L  +++ EG  H+ E   E++L H+ + ++ +
Sbjct: 1141 TSPNGSSENIEILDDLSPPHLEKNG-LNLTSVDSLEGR-HENEVSRELDLGHYMLTSIKV 1198

Query: 480  NSMVDTGPSIPQILHMV 496
            N+  ++GPSIPQILHM+
Sbjct: 1199 NTTPESGPSIPQILHMI 1215