Miyakogusa Predicted Gene

Lj1g3v4528640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4528640.1 tr|Q9C9B5|Q9C9B5_ARATH At1g73940/F2P9_19
OS=Arabidopsis thaliana GN=F2P9.19 PE=2 SV=1,37.07,9e-18,
,CUFF.32583.1
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49410.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...   154   9e-39
AT5G49410.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   154   9e-39
AT1G73940.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    94   2e-20

>AT5G49410.2 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G73940.1); Has 58 Blast hits to 58 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr5:20032901-20033751 FORWARD
           LENGTH=145
          Length = 145

 Score =  154 bits (390), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 85/106 (80%), Gaps = 2/106 (1%)

Query: 3   GTAIRCLAKKSKPKMGPIVMKTPPEQRATITRVLFDIVKEHGPISVPNTWERVKEVGLKD 62
           G   R  A K KPKM PI + TPPEQ  TITRV+FDI+K+HGP+++  TW+RVKEVGL+ 
Sbjct: 18  GMLTRHFATKPKPKMKPIELNTPPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGLRG 77

Query: 63  LKSKNHMKIVLRWMRERQKLRLVCNHVGAHKQFLYTTWFT--NPGT 106
           L SK HMKI+LRWMRERQKL+L+CNHVG HKQFLYTTWFT  NP +
Sbjct: 78  LTSKRHMKIILRWMRERQKLKLICNHVGPHKQFLYTTWFTKHNPSS 123


>AT5G49410.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G73940.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:20032901-20033751
           FORWARD LENGTH=145
          Length = 145

 Score =  154 bits (390), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 85/106 (80%), Gaps = 2/106 (1%)

Query: 3   GTAIRCLAKKSKPKMGPIVMKTPPEQRATITRVLFDIVKEHGPISVPNTWERVKEVGLKD 62
           G   R  A K KPKM PI + TPPEQ  TITRV+FDI+K+HGP+++  TW+RVKEVGL+ 
Sbjct: 18  GMLTRHFATKPKPKMKPIELNTPPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGLRG 77

Query: 63  LKSKNHMKIVLRWMRERQKLRLVCNHVGAHKQFLYTTWFT--NPGT 106
           L SK HMKI+LRWMRERQKL+L+CNHVG HKQFLYTTWFT  NP +
Sbjct: 78  LTSKRHMKIILRWMRERQKLKLICNHVGPHKQFLYTTWFTKHNPSS 123


>AT1G73940.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G49410.2); Has 54 Blast hits to 54 proteins in
           11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:27798519-27799522 REVERSE
           LENGTH=151
          Length = 151

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 73/116 (62%), Gaps = 2/116 (1%)

Query: 6   IRCLAKKSKPKMGPIVMKTPPEQRATITRVLFDIVKEHGPISVPNTWERVKEVGLKDLKS 65
           +R ++++    +  I  K P ++   I+  L+D+ K HGP+SVPNTW R +E G+  L S
Sbjct: 31  VRYMSRERAVNVRKINPKVPIQEAYAISNSLYDLFKLHGPLSVPNTWLRAQEAGVSGLNS 90

Query: 66  KNHMKIVLRWMRERQKLRLVCNHVGAHKQFLYTTWFTNPGTAQATPGGSVPSKQKS 121
           K HMK++L+WMR ++ L+L+CN VG+ K+F +T    +P   Q  P   + +K+++
Sbjct: 91  KTHMKLLLKWMRGKKMLKLICNQVGSSKKFFHTVLPEDP--LQEQPAAPIENKKQA 144