Miyakogusa Predicted Gene

Lj1g3v4528600.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4528600.1 Non Chatacterized Hit- tr|H2W188|H2W188_CAEJA
Uncharacterized protein OS=Caenorhabditis japonica
GN=,28.69,2e-18,seg,NULL; Short conserved domain in transcriptional
re,Plus-3 domain, subgroup; SUBFAMILY NOT NAMED,,CUFF.32581.1
         (638 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G61040.1 | Symbols: VIP5 | plus-3 domain-containing protein |...   551   e-157

>AT1G61040.1 | Symbols: VIP5 | plus-3 domain-containing protein |
           chr1:22483817-22485748 FORWARD LENGTH=643
          Length = 643

 Score =  551 bits (1420), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 324/658 (49%), Positives = 381/658 (57%), Gaps = 35/658 (5%)

Query: 1   MADLENLLLEAAGRN----RHSLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGKHSA 56
           M DLENLLLEAAGR     R   PP                           Y + K S 
Sbjct: 1   MGDLENLLLEAAGRTNSAGRSRHPPSSRRREGSYSDGSSDSRDDSDEDRG--YASRKPSG 58

Query: 57  MQVPLKKRXXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXYKNDGDRKKLSEMTE 109
            QVPLKKR                                     YKN+ DR+KL+ MTE
Sbjct: 59  SQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTE 118

Query: 110 LQREMILSDRASKKDDKGLLVKLTQNRGDKGKTRSASRMETPPPXXXXXXXXXXXXXXXX 169
            QREMILS+RA KK DK    KL   R +  KT  + +   P P                
Sbjct: 119 FQREMILSERADKKGDKNFTEKLRSKR-ESEKTPVSKKETQPLPASRGVRSSARSADRAA 177

Query: 170 XX----NELRAKRSRRLGSEAQVTVSELSRS-SGL----SPKRKPFXXXXXXXXXXXXXX 220
                 NELRAKR ++    A   + + S+  SG     S KRKP               
Sbjct: 178 AKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSDSD 237

Query: 221 XXXXXXXXXXXXXXXXXXXXXXXXXXFGGPSFEDIKEITIPRSKLAKWFMEPFFEELIVG 280
                                        P+FED+KE+TI RSKLAKW MEPFFEELIVG
Sbjct: 238 SRSQSDDEGSNGGMLDSDDDRSDV-----PTFEDVKEVTIRRSKLAKWLMEPFFEELIVG 292

Query: 281 CFVRVGIGRSKSGPIYRLCMVKNVDASDPDRLYKFENRSTYKYLNVVWGNETSAARWQMA 340
           CFVRVGIGRSKSGPIYRLC VKNVDA+DPD+ YK EN++T+KYLNVVWGNETSAARWQMA
Sbjct: 293 CFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQMA 352

Query: 341 MVSDSAPHEEEFKQWVKEVERSGGHMLMKKDVLEKKQDIQKINSFVYSAATVKQMLQEKK 400
           M+SD  P EEE++QW++EVER+ G M  K+D+ EKK+ IQ+ NSFVYSA TVKQMLQEKK
Sbjct: 353 MISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQEKK 412

Query: 401 SASSRRINVAAEKDRLRWEMELAQSKHDEAAVERIKTRLEELEASRKAQEKDAKALRLSE 460
           SAS R +NVAAEKDRLR E+E+AQSK+DEA VERIK+++++L+ASR  +  D KAL+L+E
Sbjct: 413 SASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALKLAE 472

Query: 461 MNRKNRFENFKNASQLKRANMDLKAGEAGYDPFSRRWTRSRNYYVSKPGEEXXXXXXXXX 520
           MN+KNR ENFKNAS++K     LKAGEAGYDPFSRRWTRS NYY    G+          
Sbjct: 473 MNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYY---NGKNKGKDGEENE 529

Query: 521 XXXXXXXXXKGTKAAVVVETGMVXXXXXXXXXXXXGKLVDTSAPVDQGTESNELHNFELP 580
                     G  A      G+             GKL+DT AP+ QG E N+LHNFEL 
Sbjct: 530 AAVAAAVETNGADAGA----GVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFELS 585

Query: 581 ISLSALQKFGGAKGVYAAFMARKQRIEAVAGLQVPENDGKVHPLTLTVSDYKRRRGLL 638
           +SL+ALQK+GG +GV  AFMARKQ  EA  G +V ENDGK H LTLTVSDYKRRRGLL
Sbjct: 586 LSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643