Miyakogusa Predicted Gene

Lj1g3v4528350.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4528350.2 Non Chatacterized Hit- tr|D8SDC7|D8SDC7_SELML
Putative uncharacterized protein OS=Selaginella
moelle,41.09,4e-17,Coa1,Cytochrome oxidase assembly protein
1,CUFF.32558.2
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20390.1 | Symbols:  | unknown protein; Has 50 Blast hits to ...   224   3e-59
AT2G20390.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   206   9e-54

>AT2G20390.1 | Symbols:  | unknown protein; Has 50 Blast hits to 50
           proteins in 18 species: Archae - 0; Bacteria - 2;
           Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:8796475-8798142 REVERSE LENGTH=183
          Length = 183

 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/177 (63%), Positives = 131/177 (74%), Gaps = 9/177 (5%)

Query: 1   MLAKRLGSFFKLSPKPQVSSSTRSVDEEKSKY--YGRKAVQFLLITTTGGVALSALDDLA 58
           M A+R  SFFK        SST S D+       +GRKAV F+LIT TGGVALSALDDL+
Sbjct: 1   MFARRFTSFFK-------GSSTSSPDKTAGTLGSFGRKAVSFVLITVTGGVALSALDDLS 53

Query: 59  IYHSCSSKAMEKVSKNQAVIDAIGEPIVKGSWYNASLAVAHKRHSVSCSFPVSGPQGTGL 118
           IY  CSSKAMEKV  ++ +I+AIGEPI KG WYNASLAV+H+RHSVSCSFPV GPQGTG+
Sbjct: 54  IYRGCSSKAMEKVMNSKVMIEAIGEPIEKGPWYNASLAVSHQRHSVSCSFPVIGPQGTGI 113

Query: 119 LQLKAVRNGDDSWSSYYLARDWDILIMDALLHVPGNEERHRTFRINISDNLPPSPAC 175
           L LKAVRNG+DS   +   RDWDILIMDAL+HVP NE   +T RIN++D + PSP  
Sbjct: 114 LHLKAVRNGEDSMFGFLQQRDWDILIMDALVHVPSNEGPQQTLRINVTDIVDPSPGT 170


>AT2G20390.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages. |
           chr2:8796475-8798142 REVERSE LENGTH=219
          Length = 219

 Score =  206 bits (523), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 112/212 (52%), Positives = 131/212 (61%), Gaps = 45/212 (21%)

Query: 1   MLAKRLGSFFKLSPKPQVSSSTRSVDEEKSKY--YGRKAVQFLLITTTGGVALSALDDLA 58
           M A+R  SFFK        SST S D+       +GRKAV F+LIT TGGVALSALDDL+
Sbjct: 1   MFARRFTSFFK-------GSSTSSPDKTAGTLGSFGRKAVSFVLITVTGGVALSALDDLS 53

Query: 59  IYHSCSSKAMEKVSKNQAVIDAIGEPIVKGSWYNASLAVAHKRHSVSCSFPVSGPQGTGL 118
           IY  CSSKAMEKV  ++ +I+AIGEPI KG WYNASLAV+H+RHSVSCSFPV GPQGTG+
Sbjct: 54  IYRGCSSKAMEKVMNSKVMIEAIGEPIEKGPWYNASLAVSHQRHSVSCSFPVIGPQGTGI 113

Query: 119 LQLKAVRNG------------------------------------DDSWSSYYLARDWDI 142
           L LKAVRNG                                    +DS   +   RDWDI
Sbjct: 114 LHLKAVRNGGKHSQTRTVTQRQNICVRYLHLPFFLLIGSPFLLGIEDSMFGFLQQRDWDI 173

Query: 143 LIMDALLHVPGNEERHRTFRINISDNLPPSPA 174
           LIMDAL+HVP NE   +T RIN++D + PSP 
Sbjct: 174 LIMDALVHVPSNEGPQQTLRINVTDIVDPSPG 205