Miyakogusa Predicted Gene

Lj1g3v4518320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4518320.1 Non Chatacterized Hit- tr|Q8LBZ5|Q8LBZ5_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,33.05,0.00000000007,TPR_11,NULL; TPR_REGION,Tetratricopeptide
repeat-containing domain; SUBFAMILY NOT NAMED,NULL;
TETRAT,CUFF.32556.1
         (368 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   119   4e-27
AT5G20190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   117   1e-26
AT1G04530.1 | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-lik...   117   1e-26
AT4G32340.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   110   1e-24
AT1G80130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   105   3e-23
AT2G29670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    90   2e-18
AT1G07280.3 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    87   2e-17
AT1G07280.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    87   2e-17
AT1G07280.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    87   2e-17
AT3G47080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    73   3e-13

>AT4G17940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:9965787-9966778 FORWARD
           LENGTH=274
          Length = 274

 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 69/99 (69%)

Query: 246 VEEYYKKMVEESPGDPLFLRNYAQFLYQCKHDLKGAEEYYSRAILADPKDGEVLSQYGKL 305
           + +YY++M+  +P + L L NY +FLY+ + D +GAEEYY RAIL +P DGE LS YG+L
Sbjct: 150 IGDYYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRL 209

Query: 306 VWELHHDEERASSYFERAAQASPEDSHVHAAYASFLWDT 344
           +WE   DE+RA  YF++A  ASP D  V  +YA F+W+ 
Sbjct: 210 IWETKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMWEA 248


>AT5G20190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:6814093-6815171 FORWARD
           LENGTH=290
          Length = 290

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 249 YYKKMVEESPGDPLFLRNYAQFLYQCKHDLKGAEEYYSRAILADPKDGEVLSQYGKLVWE 308
           +Y+KM+E +PG+ +FL NYA+FL + + D   AEEY  RAIL  P DG VL+ Y +LVW+
Sbjct: 159 HYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWK 218

Query: 309 LHHDEERASSYFERAAQASPEDSHVHAAYASFLWD 343
           +H D  RA +YF +A  A+PED +V A+YA FLWD
Sbjct: 219 IHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWD 253


>AT1G04530.1 | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:1234456-1235895 REVERSE
           LENGTH=310
          Length = 310

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 248 EYYKKMVEESPGDPLFLRNYAQFLYQCKHDLKGAEEYYSRAILADPKDGEVLSQYGKLVW 307
           +YYK M+EE P  PL L+NYA+FL + K DL GAEEYY +  + +P DG  L+ YG+LV 
Sbjct: 123 DYYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVM 181

Query: 308 ELHHDEERASSYFERAAQASPEDSHVHAAYASFLWDT 344
           +LH DE +A SYFERA QASP+DS V AAYASFLW+ 
Sbjct: 182 KLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEI 218



 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 20/118 (16%)

Query: 249 YYKKMVEESPGDPLFLRNYAQFLYQCKHDL--------------KGAEEYYSRAI----- 289
           Y+++ V+ SP D + L  YA FL++   D               +G +E+ + A      
Sbjct: 193 YFERAVQASPDDSIVLAAYASFLWEINADDDDEDDDEDDDESSGQGKDEFEADAAGKGKS 252

Query: 290 -LADPKDGEVLSQYGKLVWELHHDEERASSYFERAAQASPEDSHVHAAYASFLWDTEE 346
            L+  +DGE L +Y K  W +++D E+A  YFE+A +ASP DS +   YA FLW+ +E
Sbjct: 253 SLSKTEDGETLCRYAKAFWSINNDHEKALFYFEKAVEASPNDSIILGEYARFLWEIDE 310


>AT4G32340.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:15612741-15614219 REVERSE
           LENGTH=238
          Length = 238

 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 83/124 (66%), Gaps = 10/124 (8%)

Query: 246 VEEYYKKMVEESPGDPLFLRNYAQFLYQCKHDLKGAEEYYSRAILADP-KDGEVLSQYGK 304
           V+ YY++M++  PGD L L NYA+FL + K D + AEEY  RA+L++  +DGE+LS YG 
Sbjct: 110 VDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGD 169

Query: 305 LVWELHHDEERASSYFERAAQASPEDSHVHAAYASFLWD---------TEEGEDGCNESQ 355
           L+W+ H D  RA SY+++A Q+SP+D +V A+YA FLWD         ++  EDG ++S 
Sbjct: 170 LIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDAEEEVEEEESKHHEDGFSDST 229

Query: 356 CLPS 359
             PS
Sbjct: 230 YNPS 233


>AT1G80130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:30141250-30142478 REVERSE
           LENGTH=305
          Length = 305

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 66/97 (68%)

Query: 246 VEEYYKKMVEESPGDPLFLRNYAQFLYQCKHDLKGAEEYYSRAILADPKDGEVLSQYGKL 305
            + YY++M++ +PG+ L   NYA+FL + K D+K AEEY  RAIL +  DG VLS Y  L
Sbjct: 165 TDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADL 224

Query: 306 VWELHHDEERASSYFERAAQASPEDSHVHAAYASFLW 342
           +   H D +RA SY+++A + SPED +V A+YA FLW
Sbjct: 225 ILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLW 261


>AT2G29670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:12682309-12684745 REVERSE
           LENGTH=536
          Length = 536

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 59/106 (55%), Gaps = 1/106 (0%)

Query: 246 VEEYYKKMVEESPGDPLFLRNYAQFLYQCKHDLKGAEEYYSRAILADPKDGEVLSQYGKL 305
            E  Y+  + + P +PL L NYAQFLY   +D   AEEY+ RA+  +PKD E  S+Y   
Sbjct: 420 TELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATF 479

Query: 306 VWELHHDEERASSYFERAAQASPEDSHVHAAYASFLWDTEEGEDGC 351
           +W    D   A   F  A  A P +S+  A YA+FLW+T  G+D C
Sbjct: 480 LWRARDDLWAAEETFLEAIDADPTNSYYAANYANFLWNT-GGDDTC 524


>AT1G07280.3 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2238505-2240991 FORWARD
           LENGTH=552
          Length = 552

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 1/106 (0%)

Query: 246 VEEYYKKMVEESPGDPLFLRNYAQFLYQCKHDLKGAEEYYSRAILADPKDGEVLSQYGKL 305
            E  Y+  + + PG+ L L NYAQFLY   HD   AE+Y+ RA  A+P D E L++Y   
Sbjct: 435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494

Query: 306 VWELHHDEERASSYFERAAQASPEDSHVHAAYASFLWDTEEGEDGC 351
           +W   +D  RA   +  A  A P +S   A YA FLW+T  G++ C
Sbjct: 495 LWRARNDIWRAEETYLEAISADPTNSVYSANYAHFLWNT-GGDETC 539


>AT1G07280.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2238505-2240991 FORWARD
           LENGTH=552
          Length = 552

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 1/106 (0%)

Query: 246 VEEYYKKMVEESPGDPLFLRNYAQFLYQCKHDLKGAEEYYSRAILADPKDGEVLSQYGKL 305
            E  Y+  + + PG+ L L NYAQFLY   HD   AE+Y+ RA  A+P D E L++Y   
Sbjct: 435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494

Query: 306 VWELHHDEERASSYFERAAQASPEDSHVHAAYASFLWDTEEGEDGC 351
           +W   +D  RA   +  A  A P +S   A YA FLW+T  G++ C
Sbjct: 495 LWRARNDIWRAEETYLEAISADPTNSVYSANYAHFLWNT-GGDETC 539


>AT1G07280.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2238505-2240991 FORWARD
           LENGTH=552
          Length = 552

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 1/106 (0%)

Query: 246 VEEYYKKMVEESPGDPLFLRNYAQFLYQCKHDLKGAEEYYSRAILADPKDGEVLSQYGKL 305
            E  Y+  + + PG+ L L NYAQFLY   HD   AE+Y+ RA  A+P D E L++Y   
Sbjct: 435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494

Query: 306 VWELHHDEERASSYFERAAQASPEDSHVHAAYASFLWDTEEGEDGC 351
           +W   +D  RA   +  A  A P +S   A YA FLW+T  G++ C
Sbjct: 495 LWRARNDIWRAEETYLEAISADPTNSVYSANYAHFLWNT-GGDETC 539


>AT3G47080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:17338415-17340129 REVERSE
           LENGTH=515
          Length = 515

 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 1/106 (0%)

Query: 246 VEEYYKKMVEESPGDPLFLRNYAQFLYQCKHDLKGAEEYYSRAILADPKDGEVLSQYGKL 305
            E  YK  + + P + L L NYAQFLY    D + AE  + +AI ++  D E  S+Y   
Sbjct: 400 TELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIF 459

Query: 306 VWELHHDEERASSYFERAAQASPEDSHVHAAYASFLWDTEEGEDGC 351
           +W++ +D   A   F  A  A P +S   A YA+FLW+T  GE+ C
Sbjct: 460 LWKVRNDLWAAEENFLEAISADPTNSFYAANYANFLWNT-GGEETC 504