Miyakogusa Predicted Gene

Lj1g3v4518310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4518310.1 Non Chatacterized Hit- tr|Q2PEQ3|Q2PEQ3_TRIPR
Putative uncharacterized protein OS=Trifolium
pratense,75.58,0,NTF2,Nuclear transport factor 2; RRM_6,NULL; RNA
recognition motif,RNA recognition motif domain; NUC,CUFF.32577.1
         (462 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43960.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   321   7e-88
AT5G43960.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   244   1e-64
AT3G25150.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   162   5e-40
AT3G25150.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   162   6e-40
AT5G48650.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   131   1e-30
AT1G13730.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   114   1e-25
AT2G03640.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   110   2e-24
AT2G03640.3 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   110   2e-24
AT5G60980.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    97   2e-20
AT5G60980.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    97   2e-20
AT2G03640.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    75   9e-14
AT2G03640.4 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    75   1e-13
AT3G07250.1 | Symbols:  | nuclear transport factor 2 (NTF2) fami...    75   1e-13
AT1G69250.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    66   6e-11
AT1G69250.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    64   2e-10
AT3G55540.1 | Symbols:  | nuclear transport factor 2 (NTF2) fami...    49   9e-06

>AT5G43960.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr5:17689154-17691653 REVERSE LENGTH=450
          Length = 450

 Score =  321 bits (822), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 204/429 (47%), Positives = 254/429 (59%), Gaps = 17/429 (3%)

Query: 1   MASSFTGSVSAAQVGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIRVDGDITETAPDVLPI 60
           MA+ + G   A QVGSYFVGQYYQVL+QQP L+HQFYS+ S  IR+DGD TETA  +L I
Sbjct: 1   MATPYPG---ATQVGSYFVGQYYQVLQQQPDLIHQFYSEPSRAIRIDGDSTETANSLLHI 57

Query: 61  HSIVTSLTFSTIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYF 120
           H++V SL F+ IE+KTINS++SW GGVLVVVSG VK K+   +R FVQTF LAPQEKGYF
Sbjct: 58  HNMVMSLNFTAIEVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYF 117

Query: 121 VLNDIFHFADDGVTHPNTVPVESEQYDTEPHYVPASLAEPPAAHYDLEEEAREYVDSVHI 180
           VL+D+F F D+G  + +     SE         P    +P  + Y LEEEA +YV++V I
Sbjct: 118 VLSDVFLFVDEGTVYYHQPSYLSEIKHEAQLNPPTRHPDPQVSDYVLEEEASDYVNAVQI 177

Query: 181 DDDLVDKYSLPEEQQQLQ-EDXXXXXXXXXXPAQEAPPPIHSVAQTTHETPVAFVEESFE 239
            DDLVDKYSL E+Q Q Q ED          P +E            HE   A VEE   
Sbjct: 178 KDDLVDKYSLQEDQHQPQHEDYEDEVAIEETPREEV------AVDVVHEHRAAPVEEPVG 231

Query: 240 EPAKKTYASILRVSKGQSVLSAAPQQAPQYTFKSAPPPPEVNHXXXXXXXXXXXXXXYIP 299
           E +K +YASIL+V+K  + +  A  Q P Y  KS+    E +                I 
Sbjct: 232 EKSKMSYASILKVAKEAATVPVAATQ-PSYN-KSSQDINEWDQPMRTPSPQLAAPLAPIQ 289

Query: 300 ESXXXXXXXXXXXXXXXXXX----XVTSVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFI 355
           +S                         SVYVRNLP D++ SEIE+EFKNFG IKPDG+F+
Sbjct: 290 QSNSSTYVSDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFL 349

Query: 356 RVRQEI-GVCYAFVEFEDIIGVQNALQASPLQLAGRQVYIEERRPNSGSAAXXXXXXXXX 414
           R R+++ GVCYAFVEFED+  V+NA++ASP+ L GRQVYIEERRPN              
Sbjct: 350 RTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNPAGVRGARRGGGRG 409

Query: 415 XXXYPTDAP 423
              YPT+AP
Sbjct: 410 RGGYPTEAP 418


>AT5G43960.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr5:17689154-17691220 REVERSE LENGTH=391
          Length = 391

 Score =  244 bits (622), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 164/367 (44%), Positives = 206/367 (56%), Gaps = 14/367 (3%)

Query: 63  IVTSLTFSTIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVL 122
           +V SL F+ IE+KTINS++SW GGVLVVVSG VK K+   +R FVQTF LAPQEKGYFVL
Sbjct: 1   MVMSLNFTAIEVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVL 60

Query: 123 NDIFHFADDGVTHPNTVPVESEQYDTEPHYVPASLAEPPAAHYDLEEEAREYVDSVHIDD 182
           +D+F F D+G  + +     SE         P    +P  + Y LEEEA +YV++V I D
Sbjct: 61  SDVFLFVDEGTVYYHQPSYLSEIKHEAQLNPPTRHPDPQVSDYVLEEEASDYVNAVQIKD 120

Query: 183 DLVDKYSLPEEQQQLQ-EDXXXXXXXXXXPAQEAPPPIHSVAQTTHETPVAFVEESFEEP 241
           DLVDKYSL E+Q Q Q ED          P +E            HE   A VEE   E 
Sbjct: 121 DLVDKYSLQEDQHQPQHEDYEDEVAIEETPREEV------AVDVVHEHRAAPVEEPVGEK 174

Query: 242 AKKTYASILRVSKGQSVLSAAPQQAPQYTFKSAPPPPEVNHXXXXXXXXXXXXXXYIPES 301
           +K +YASIL+V+K  + +  A  Q P Y  KS+    E +                I +S
Sbjct: 175 SKMSYASILKVAKEAATVPVAATQ-PSYN-KSSQDINEWDQPMRTPSPQLAAPLAPIQQS 232

Query: 302 XXXXXXXXXXXXXXX----XXXXVTSVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRV 357
                                    SVYVRNLP D++ SEIE+EFKNFG IKPDG+F+R 
Sbjct: 233 NSSTYVSDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRT 292

Query: 358 RQEI-GVCYAFVEFEDIIGVQNALQASPLQLAGRQVYIEERRPNSGSAAXXXXXXXXXXX 416
           R+++ GVCYAFVEFED+  V+NA++ASP+ L GRQVYIEERRPN                
Sbjct: 293 RKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNPAGVRGARRGGGRGRG 352

Query: 417 XYPTDAP 423
            YPT+AP
Sbjct: 353 GYPTEAP 359


>AT3G25150.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr3:9157161-9159362 REVERSE LENGTH=488
          Length = 488

 Score =  162 bits (410), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 125/400 (31%), Positives = 188/400 (47%), Gaps = 47/400 (11%)

Query: 14  VGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIR-VDGDITETAPDVLPIHSIVTSLTFSTI 72
           VG+ FV QYY +L Q P  VH+FY + S + R  +  +      +  I   + +L +  I
Sbjct: 19  VGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAIDKKIMALGYGVI 78

Query: 73  --EIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIFHFAD 130
             EI T+++ +S  GG +V+V+G++  KD  R R F QTF LAPQE GYFVLND+F F D
Sbjct: 79  SAEIATVDTQESHGGGYIVLVTGYLTGKDSVR-RTFSQTFFLAPQETGYFVLNDMFRFID 137

Query: 131 DG-VTHPNTVPVESEQYDTEPHYVPASLAEPP----AAHYDLEEEAREYVDSVHIDDDLV 185
           +G V H N +PV + Q     +   A+  E P       Y  E  A +  + +    +  
Sbjct: 138 EGTVVHGNQIPVNNVQAPVNTYQDTAAAKEIPDDFVQEKYVQENHAVKQTEVLSKSINEP 197

Query: 186 DKYSLPEEQQQLQEDXXXXXXXXXXPAQEAPPPIHSVAQTTHETPVAFVEESFEEPAKKT 245
           +K   P E +Q+                EAP  +  V ++   T          E  K++
Sbjct: 198 EKVFTPSEDEQV---SAAEEALVTETVNEAPIEVQKVGESDSRTG---------EIPKRS 245

Query: 246 YASILRVSKGQSVLSAAPQQAPQYTFKSAPPPPEVNHXXXXXXXXXXXXXXYIP------ 299
           YASI++V K     +AAP  A +   K  P   E                 +IP      
Sbjct: 246 YASIVKVMK----ENAAPMSASRTPTKVEPKKQE-------------DQAIHIPLPTPLS 288

Query: 300 -ESXXXXXXXXXXXXXXXXXXXVTSVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVR 358
            +S                     S+Y++ LP D T + +E EF+ FG I+ +G  I+VR
Sbjct: 289 EKSDSGANVAVNENNQENERALGPSIYLKGLPLDATPALLENEFQKFGLIRTNG--IQVR 346

Query: 359 QEIGVCYAFVEFEDIIGVQNALQASPLQLAGRQVYIEERR 398
            + G C+ FVEFE    +Q+A++ASP+ L G +V +EE+R
Sbjct: 347 SQKGFCFGFVEFESASSMQSAIEASPVMLNGHKVVVEEKR 386


>AT3G25150.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr3:9157161-9160052 REVERSE LENGTH=587
          Length = 587

 Score =  162 bits (409), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 125/400 (31%), Positives = 188/400 (47%), Gaps = 47/400 (11%)

Query: 14  VGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIR-VDGDITETAPDVLPIHSIVTSLTFSTI 72
           VG+ FV QYY +L Q P  VH+FY + S + R  +  +      +  I   + +L +  I
Sbjct: 118 VGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAIDKKIMALGYGVI 177

Query: 73  --EIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIFHFAD 130
             EI T+++ +S  GG +V+V+G++  KD  R R F QTF LAPQE GYFVLND+F F D
Sbjct: 178 SAEIATVDTQESHGGGYIVLVTGYLTGKDSVR-RTFSQTFFLAPQETGYFVLNDMFRFID 236

Query: 131 DG-VTHPNTVPVESEQYDTEPHYVPASLAEPP----AAHYDLEEEAREYVDSVHIDDDLV 185
           +G V H N +PV + Q     +   A+  E P       Y  E  A +  + +    +  
Sbjct: 237 EGTVVHGNQIPVNNVQAPVNTYQDTAAAKEIPDDFVQEKYVQENHAVKQTEVLSKSINEP 296

Query: 186 DKYSLPEEQQQLQEDXXXXXXXXXXPAQEAPPPIHSVAQTTHETPVAFVEESFEEPAKKT 245
           +K   P E +Q+                EAP  +  V ++   T          E  K++
Sbjct: 297 EKVFTPSEDEQVS---AAEEALVTETVNEAPIEVQKVGESDSRTG---------EIPKRS 344

Query: 246 YASILRVSKGQSVLSAAPQQAPQYTFKSAPPPPEVNHXXXXXXXXXXXXXXYIP------ 299
           YASI++V K     +AAP  A +   K  P   E                 +IP      
Sbjct: 345 YASIVKVMKE----NAAPMSASRTPTKVEPKKQE-------------DQAIHIPLPTPLS 387

Query: 300 -ESXXXXXXXXXXXXXXXXXXXVTSVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVR 358
            +S                     S+Y++ LP D T + +E EF+ FG I+ +G  I+VR
Sbjct: 388 EKSDSGANVAVNENNQENERALGPSIYLKGLPLDATPALLENEFQKFGLIRTNG--IQVR 445

Query: 359 QEIGVCYAFVEFEDIIGVQNALQASPLQLAGRQVYIEERR 398
            + G C+ FVEFE    +Q+A++ASP+ L G +V +EE+R
Sbjct: 446 SQKGFCFGFVEFESASSMQSAIEASPVMLNGHKVVVEEKR 485


>AT5G48650.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr5:19727279-19729533 FORWARD LENGTH=458
          Length = 458

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 174/402 (43%), Gaps = 33/402 (8%)

Query: 14  VGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIRVDGD-ITETAPDVLPIHSIVTSLTF--- 69
           VGS FV QYY +    P  + +FY + S + RV  D +         I   +  LT+   
Sbjct: 16  VGSAFVNQYYYIFCNMPEHLPRFYQEISRVGRVGQDGVMRDFSTFQGISEELKRLTYGDC 75

Query: 70  STIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIFHFA 129
           ++ EI + ++ +S NGG L+ V+G+  + +  R RKF QTF LAPQEKG+FVLNDI  F 
Sbjct: 76  NSAEITSYDTQESHNGGFLLFVTGYFTLNERSR-RKFTQTFFLAPQEKGFFVLNDILRFV 134

Query: 130 DDGVTH--PNTVPVE--SEQYDTEPHYVPASLAEPPAAHYDLEEEAREYVDSVHIDDDLV 185
           +D      P T+  E  S    T P  +        AA   +    +E V     +++  
Sbjct: 135 NDDAKDNVPETIDGEVVSGINSTTPTIINGMKGSEQAACVSVNPVCKE-VSKPLDNENAK 193

Query: 186 DKYSLPEEQQQLQEDXXXXXXXXXXPAQEAPPPIHSVAQTTHETPVAFVEESFEEPAKKT 245
           D   +PE   ++               +   P                 ++   +  KK+
Sbjct: 194 DNVLVPEIANEVARTEITCKEVADDSQKNYDP-----------------DDGLADAPKKS 236

Query: 246 YASILRVSKGQ----SVLSAAPQQAPQYTFKSAPPPPEVNHXXXXXXXXXXXXXXYIPES 301
           YAS+L+V+K +    +V   +P++ P+     AP  P                   + ES
Sbjct: 237 YASVLKVTKDKFGVPAVSLPSPKKIPKDQEHQAPSDPSTGQILKDQGQQASSDPSQVIES 296

Query: 302 XXXXXXXXXXXXXXXXXXXV--TSVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVRQ 359
                                 TS+YVR+LP +     +E EFK FG I   GI +  ++
Sbjct: 297 DTVSESVDASENGHNQEAVAEGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQR 356

Query: 360 EIGVCYAFVEFEDIIGVQNALQASPLQLAGRQVYIEERRPNS 401
            +G  Y FVEFE+      A++ASP+++ G + ++EE+   S
Sbjct: 357 GLGYPYGFVEFEEADAAHRAIEASPVKIGGLRAFVEEKLSTS 398


>AT1G13730.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr1:4710519-4712332 FORWARD LENGTH=428
          Length = 428

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 165/395 (41%), Gaps = 57/395 (14%)

Query: 14  VGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIR--VDGDITETAPDVLPIHSIVTSLTF-- 69
           +G+ FV +YY +L + PS VHQFY D S + R   DG++  +   +  I+  + S  +  
Sbjct: 15  IGNSFVEKYYNLLYKSPSQVHQFYLDDSVLGRPGSDGEMV-SVKSLKAINEQIMSFDYEI 73

Query: 70  STIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIFHFA 129
           S I+I T +S  S+  GV+ +V+G + +K+  R R F Q+F L P    YFVLND+F   
Sbjct: 74  SKIQILTADSQASYMNGVVTLVTGLLTVKEGQRMR-FSQSFFLVPLNGSYFVLNDVFR-- 130

Query: 130 DDGVTHPNTVPVESEQYDTEPHYVPASLAEPPAAHYDLEEEAREYVDSVHIDDDLVDKYS 189
                                 YV   + EP A   ++EE   + V      D++ +  +
Sbjct: 131 ----------------------YVADEIVEPEANKKEVEEVIPQVVQPTEQVDEVAEPVT 168

Query: 190 LPEEQQQLQEDXXXXXXXXXXPAQEAPPPIHSVAQTTHETPVAFVEESFEEPAKKTYASI 249
           +P +Q + ++                 P        T E  V   + +  +  KK++A I
Sbjct: 169 IPTQQPEAKQTTENTVKKPERAVANGHP-------KTQEDNVVNDKSNGVDAPKKSFAHI 221

Query: 250 LRVSKGQSVLSAAPQQAPQYTFKSAPPPPEVNHXXXXXXXXXXXXXXYIPESXXXXXXXX 309
           ++            Q    +  K++P  P+                  + E         
Sbjct: 222 VQ---------DLAQNGATFNAKASPAKPKSKPVTKPSAARESKAPAPVSEHSSAATIDQ 272

Query: 310 XXXXXXXXXXXVTSVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVRQEIGVCYAFVE 369
                        +++V NL  D T  ++ + FK FG I  DGI +R  +  G C+ FV 
Sbjct: 273 QAEGY--------TIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVT 324

Query: 370 FEDIIGVQNALQA---SPLQLAGRQVYIEERRPNS 401
           F     V+  LQA   S +++  R+V IEE+R N+
Sbjct: 325 FASAEAVKLVLQAHKESAIRIGNRRVSIEEKRGNN 359


>AT2G03640.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr2:1104525-1106418 REVERSE LENGTH=423
          Length = 423

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 168/404 (41%), Gaps = 82/404 (20%)

Query: 14  VGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIR--VDGDITETAPDVLPIHSIVTSLTF-- 69
           VG+ FV +YY  L    S VH+FY + S + R  +DG+I  T   +  I+  + S+ +  
Sbjct: 15  VGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIV-TIKSLKGINDQIMSIDYKS 73

Query: 70  STIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIFHFA 129
           S IEI T +S  +   GV+ +V+G V   D  R RKF Q+F L  +   YFVLND F + 
Sbjct: 74  SRIEILTADSQSTLKNGVVTLVTGLVIGNDGGR-RKFSQSFFLVSRNGSYFVLNDTFRYV 132

Query: 130 DDGVTHPNTVPVESEQYDTEPHYVPASLAEPPAAHYDLEEEAREYVDSVHIDDDLVDKYS 189
            D    P     E+ +   E     A  AEP          A E V++V +  +     +
Sbjct: 133 SDEFVEP-----EATKEVEESQSTNAITAEP----------ANESVEAVIVPTEAKTTVT 177

Query: 190 LPEEQQQLQEDXXXXXXXXXXPAQEAPPPIHSVAQTTHETPVAFVEESFEEPAKKTYASI 249
            P                   P   A  P   V       P A   +  EE  KK++A I
Sbjct: 178 KP---------------ASAIPNGHAKVPEEKVVNENSSLPKAAEAKLQEEVPKKSFALI 222

Query: 250 ---LRVSKGQSVLSAAPQQ---------APQYTFKSAPPPPEVNHXXXXXXXXXXXXXXY 297
              L  S G   + A+P +         AP+   + AP P                    
Sbjct: 223 VQSLAQSAGTLQVKASPVKRKPVEKPVAAPE---RKAPSP----------IRKQASAESI 269

Query: 298 IPESXXXXXXXXXXXXXXXXXXXVTSVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRV 357
            P++                    +S++V NLP D T  ++ + FK+FG I+ DGI +R 
Sbjct: 270 KPQAQG------------------SSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRS 311

Query: 358 RQEIGVCYAFVEFEDIIGVQNALQA---SPLQLAGRQVYIEERR 398
             E   C  FV FE+   V+N  QA   SP+++  R+  IEE+R
Sbjct: 312 YPEKKNCIGFVAFENGEAVKNVFQAHRESPIRIGNRRASIEEKR 355


>AT2G03640.3 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr2:1104525-1106418 REVERSE LENGTH=454
          Length = 454

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 168/404 (41%), Gaps = 82/404 (20%)

Query: 14  VGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIR--VDGDITETAPDVLPIHSIVTSLTF-- 69
           VG+ FV +YY  L    S VH+FY + S + R  +DG+I  T   +  I+  + S+ +  
Sbjct: 15  VGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIV-TIKSLKGINDQIMSIDYKS 73

Query: 70  STIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIFHFA 129
           S IEI T +S  +   GV+ +V+G V   D  R RKF Q+F L  +   YFVLND F + 
Sbjct: 74  SRIEILTADSQSTLKNGVVTLVTGLVIGNDGGR-RKFSQSFFLVSRNGSYFVLNDTFRYV 132

Query: 130 DDGVTHPNTVPVESEQYDTEPHYVPASLAEPPAAHYDLEEEAREYVDSVHIDDDLVDKYS 189
            D    P     E+ +   E     A  AEP          A E V++V +  +     +
Sbjct: 133 SDEFVEP-----EATKEVEESQSTNAITAEP----------ANESVEAVIVPTEAKTTVT 177

Query: 190 LPEEQQQLQEDXXXXXXXXXXPAQEAPPPIHSVAQTTHETPVAFVEESFEEPAKKTYASI 249
            P                   P   A  P   V       P A   +  EE  KK++A I
Sbjct: 178 KP---------------ASAIPNGHAKVPEEKVVNENSSLPKAAEAKLQEEVPKKSFALI 222

Query: 250 ---LRVSKGQSVLSAAPQQ---------APQYTFKSAPPPPEVNHXXXXXXXXXXXXXXY 297
              L  S G   + A+P +         AP+   + AP P                    
Sbjct: 223 VQSLAQSAGTLQVKASPVKRKPVEKPVAAPE---RKAPSP----------IRKQASAESI 269

Query: 298 IPESXXXXXXXXXXXXXXXXXXXVTSVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRV 357
            P++                    +S++V NLP D T  ++ + FK+FG I+ DGI +R 
Sbjct: 270 KPQAQG------------------SSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRS 311

Query: 358 RQEIGVCYAFVEFEDIIGVQNALQA---SPLQLAGRQVYIEERR 398
             E   C  FV FE+   V+N  QA   SP+++  R+  IEE+R
Sbjct: 312 YPEKKNCIGFVAFENGEAVKNVFQAHRESPIRIGNRRASIEEKR 355


>AT5G60980.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr5:24543988-24546027 FORWARD LENGTH=460
          Length = 460

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 83/147 (56%), Gaps = 6/147 (4%)

Query: 8   SVSAAQVGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIRVDGDITETAPDVL-PIHSIVTS 66
           S  A  VG  FV QYY +L Q P LVH+FY DSS + R D     T    +  I+  + S
Sbjct: 9   SPGAEVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAINDKILS 68

Query: 67  LTFS--TIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLND 124
           L +   T EI+T ++ +S   GV+V+V+G +   D  RK KF Q+F LAPQ+KGYFVLND
Sbjct: 69  LKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRK-KFSQSFFLAPQDKGYFVLND 127

Query: 125 IFHFADDG--VTHPNTVPVESEQYDTE 149
           +F F ++        +VP+     D +
Sbjct: 128 VFRFLEEKEVTAQARSVPINGTTRDVQ 154



 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 55/76 (72%)

Query: 323 SVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVRQEIGVCYAFVEFEDIIGVQNALQA 382
           S+YVRNLP D T +++E+ FKNFG IK +GI +R  ++ G C+ FVEFE   G Q+AL+A
Sbjct: 294 SIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQSALEA 353

Query: 383 SPLQLAGRQVYIEERR 398
           SP+ +  RQ  +EE++
Sbjct: 354 SPVTIGDRQAVVEEKK 369


>AT5G60980.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr5:24543988-24546027 FORWARD LENGTH=459
          Length = 459

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 83/147 (56%), Gaps = 6/147 (4%)

Query: 8   SVSAAQVGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIRVDGDITETAPDVL-PIHSIVTS 66
           S  A  VG  FV QYY +L Q P LVH+FY DSS + R D     T    +  I+  + S
Sbjct: 9   SPGAEVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAINDKILS 68

Query: 67  LTFS--TIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLND 124
           L +   T EI+T ++ +S   GV+V+V+G +   D  RK KF Q+F LAPQ+KGYFVLND
Sbjct: 69  LKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRK-KFSQSFFLAPQDKGYFVLND 127

Query: 125 IFHFADDG--VTHPNTVPVESEQYDTE 149
           +F F ++        +VP+     D +
Sbjct: 128 VFRFLEEKEVTAQARSVPINGTTRDVQ 154



 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 323 SVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVRQEIGVCYAFVEFEDIIGVQNALQA 382
           S+YVRNLP D T +++E+ FKNFG IK +GI +R  ++ G C+ FVEFE   G Q+AL+A
Sbjct: 294 SIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQ-GFCFGFVEFETSSGKQSALEA 352

Query: 383 SPLQLAGRQVYIEERR 398
           SP+ +  RQ  +EE++
Sbjct: 353 SPVTIGDRQAVVEEKK 368


>AT2G03640.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr2:1104525-1106418 REVERSE LENGTH=422
          Length = 422

 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 14  VGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIR--VDGDITETAPDVLPIHSIVTSLTF-- 69
           VG+ FV +YY  L    S VH+FY + S + R  +DG+I  T   +  I+  + S+ +  
Sbjct: 15  VGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIV-TIKSLKGINDQIMSIDYKS 73

Query: 70  STIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIFHFA 129
           S IEI T +S  +   GV+ +V+G V   D  R RKF Q+F L  +   YFVLND F + 
Sbjct: 74  SRIEILTADSQSTLKNGVVTLVTGLVIGNDGGR-RKFSQSFFLVSRNGSYFVLNDTFRYV 132

Query: 130 DDGVTHPNTVPVESEQYDTEPHYVPAS 156
            D    P       E   T     PA+
Sbjct: 133 SDEFVEPEATKEVEESQSTNAITEPAN 159



 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 322 TSVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVRQEIGVCYAFVEFEDIIGVQNALQ 381
           +S++V NLP D T  ++ + FK+FG I+ DGI +R   E   C  FV FE+   V+N  Q
Sbjct: 275 SSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEAVKNVFQ 334

Query: 382 A---SPLQLAGRQVYIEERR 398
           A   SP+++  R+  IEE+R
Sbjct: 335 AHRESPIRIGNRRASIEEKR 354


>AT2G03640.4 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr2:1104525-1106418 REVERSE LENGTH=453
          Length = 453

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 14  VGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIR--VDGDITETAPDVLPIHSIVTSLTF-- 69
           VG+ FV +YY  L    S VH+FY + S + R  +DG+I  T   +  I+  + S+ +  
Sbjct: 15  VGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIV-TIKSLKGINDQIMSIDYKS 73

Query: 70  STIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIFHFA 129
           S IEI T +S  +   GV+ +V+G V   D  R RKF Q+F L  +   YFVLND F + 
Sbjct: 74  SRIEILTADSQSTLKNGVVTLVTGLVIGNDGGR-RKFSQSFFLVSRNGSYFVLNDTFRYV 132

Query: 130 DDGVTHPNTVPVESEQYDTEPHYVPAS 156
            D    P       E   T     PA+
Sbjct: 133 SDEFVEPEATKEVEESQSTNAITEPAN 159



 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 322 TSVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVRQEIGVCYAFVEFEDIIGVQNALQ 381
           +S++V NLP D T  ++ + FK+FG I+ DGI +R   E   C  FV FE+   V+N  Q
Sbjct: 275 SSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEAVKNVFQ 334

Query: 382 A---SPLQLAGRQVYIEERR 398
           A   SP+++  R+  IEE+R
Sbjct: 335 AHRESPIRIGNRRASIEEKR 354


>AT3G07250.1 | Symbols:  | nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           | chr3:2300579-2308305 REVERSE LENGTH=1294
          Length = 1294

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 14  VGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIRVDGDITETAPDVLPIHSIVTSLTFSTIE 73
           VG  F  QYY  L+  P  +++ Y D S++ R   D T     +       +  +F +++
Sbjct: 281 VGDEFARQYYNTLQNAPENLYKLYKDKSTISRPGLDGTMRVFTLSKDLKWRSPGSFDSVK 340

Query: 74  IKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIFHFAD 130
           I ++ S DS   G+LVVV G++   +    R F Q F L PQEKGY V  D+F F D
Sbjct: 341 ITSVTSQDSLKQGILVVVYGYLTFNE-RPARHFTQVFFLVPQEKGYIVCTDMFRFVD 396



 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%)

Query: 14   VGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIR--VDGDI-TETAPDVLPIHSIVTSLTFS 70
            + ++F   YY  L+  P ++  +Y D S + R  +DG + + T PD++    +++   F 
Sbjct: 944  IAAFFSEHYYNNLQNSPEILPGYYKDVSKITRPGLDGTMRSSTLPDIIEDLDMLSPGGFD 1003

Query: 71   TIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIFHFAD 130
            ++E+ ++ S DS + G+ V V G+    +    R F Q F  APQEKG FV  D+F F  
Sbjct: 1004 SVEVTSVMSQDSHDKGIRVAVDGYFTFNE-RPARNFTQNFTFAPQEKGLFVSTDMFKFV- 1061

Query: 131  DGVTHPN-TVP 140
             G+   N T+P
Sbjct: 1062 -GIPEANATIP 1071



 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 323  SVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVRQEIGVCYAFVEFEDIIGVQNALQA 382
            ++ V+NLP + T + +E  FK FG I+  G+   VR +    Y FVEF++    Q A++A
Sbjct: 1077 AICVKNLPLNATIALVENAFKQFGEIRRGGV--EVRNKRSFSYGFVEFKEENAAQRAIKA 1134

Query: 383  SPLQLAGRQVYIEERRPN 400
            SP+ +  R VY+E++RP+
Sbjct: 1135 SPVTIDLRSVYVEKKRPD 1152



 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 43/75 (57%)

Query: 323 SVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVRQEIGVCYAFVEFEDIIGVQNALQA 382
           ++  + LP D T + +E  FK FG I+  G+ +R+       YA+VEFE+      A+ A
Sbjct: 446 AICAKKLPLDATIAFVENAFKQFGEIRRGGVEVRINWHCTGKYAYVEFEEAEAANRAIMA 505

Query: 383 SPLQLAGRQVYIEER 397
           SP+ + G + Y+E++
Sbjct: 506 SPISIDGYRTYVEKK 520



 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%)

Query: 324 VYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVRQEIGVCYAFVEFEDIIGVQNALQAS 383
           + V++LP + T + +E  FK FG IK   I +         YAFVEFE+    + A+QAS
Sbjct: 552 IRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAKRAIQAS 611

Query: 384 PLQLAGRQVYIEERRP 399
           PL + G   Y+E+++P
Sbjct: 612 PLNVDGHTTYVEQKQP 627


>AT1G69250.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr1:26033163-26035301 FORWARD LENGTH=427
          Length = 427

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 10  SAAQVGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIR--VDGDITE-TAPDVLPIHSIVTS 66
           SA  + + FV QYY VL Q P    + Y D+S + R  V G +   T+ + +  H +   
Sbjct: 9   SAQDIAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEAINKHILSCD 68

Query: 67  LTFSTIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIF 126
              +  E+ +++S +S   G+ ++V GF+  KD  R RKF Q F LA Q     VLND+ 
Sbjct: 69  FENTKFEVLSVDSQNSLEDGIFIMVIGFMTGKDNQR-RKFSQMFYLARQNT-LVVLNDML 126

Query: 127 HFADDGVTHPNTVPVE 142
            + D   +     P E
Sbjct: 127 RYVDQEDSSTTETPCE 142



 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 5/81 (6%)

Query: 322 TSVYVRNLPGDVTESEIEQEFKNFGRIKPDGIFIRVRQEIG--VCYAFVEFEDIIGVQNA 379
           TS++V NLP +    ++ + FK+FG IK +GI +R  +     VC+ F+ FE +  VQ+ 
Sbjct: 280 TSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETVASVQSV 339

Query: 380 LQA---SPLQLAGRQVYIEER 397
           LQA   +P  LA R++ ++E+
Sbjct: 340 LQAAKNTPFMLADRKLRVKEK 360


>AT1G69250.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr1:26033163-26035007 FORWARD LENGTH=389
          Length = 389

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 10  SAAQVGSYFVGQYYQVLRQQPSLVHQFYSDSSSMIR--VDGDITE-TAPDVLPIHSIVTS 66
           SA  + + FV QYY VL Q P    + Y D+S + R  V G +   T+ + +  H +   
Sbjct: 9   SAQDIAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEAINKHILSCD 68

Query: 67  LTFSTIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLAPQEKGYFVLNDIF 126
              +  E+ +++S +S   G+ ++V GF+  KD +++RKF Q F LA Q     VLND+ 
Sbjct: 69  FENTKFEVLSVDSQNSLEDGIFIMVIGFMTGKD-NQRRKFSQMFYLARQNT-LVVLNDML 126

Query: 127 HFADDGVTHPNTVPVE 142
            + D   +     P E
Sbjct: 127 RYVDQEDSSTTETPCE 142


>AT3G55540.1 | Symbols:  | nuclear transport factor 2 (NTF2) family
           protein | chr3:20598218-20599614 FORWARD LENGTH=334
          Length = 334

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 10/137 (7%)

Query: 3   SSFTGSVSAAQVGSYFVGQYYQVLRQQPSLVHQ-FYSDSSSMIRV--DGDITE-TAPDVL 58
           S FT   ++  + + F+  Y+  L   P +V   +Y+D S M R   DG +   T+P+ +
Sbjct: 21  SHFTNLNTSEALANCFLQSYFLNLGVYPEVVQMMWYADDSVMTRPGPDGTMMSFTSPEAI 80

Query: 59  PIHSIVTS----LTFSTIEIKTINSLDSWNGGVLVVVSGFVKIKDVHRKRKFVQTFLLA- 113
               IV+      +F  +     +   S   G  ++V+GF+  KD   +R+FVQ+  LA 
Sbjct: 81  Q-EQIVSCDYEGASFDVMSFAAQSCNTSSEDGAFIMVTGFLTCKDKQVRRRFVQSLYLAR 139

Query: 114 PQEKGYFVLNDIFHFAD 130
            Q++ Y ++ND   + D
Sbjct: 140 RQDRSYAIVNDFLRYID 156