Miyakogusa Predicted Gene
- Lj1g3v4485290.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4485290.1 tr|F1NAJ8|F1NAJ8_CHICK Tudor domain-containing
protein 3 OS=Gallus gallus GN=TDRD3 PE=4 SV=1,38.56,1e-18,GB DEF:
HYPOTHETICAL PROTEIN AT5G19950,NULL; FAMILY NOT NAMED,NULL;
DUF1767,Domain of unknown functi,CUFF.32494.1
(376 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G19950.2 | Symbols: | Domain of unknown function (DUF1767) |... 241 7e-64
AT5G19950.1 | Symbols: | Domain of unknown function (DUF1767) |... 241 7e-64
AT5G19950.3 | Symbols: | Domain of unknown function (DUF1767) |... 241 7e-64
>AT5G19950.2 | Symbols: | Domain of unknown function (DUF1767) |
chr5:6741163-6743702 REVERSE LENGTH=443
Length = 443
Score = 241 bits (614), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 159/385 (41%), Positives = 214/385 (55%), Gaps = 41/385 (10%)
Query: 13 TVVLETLRGRGWCLEDTDQLKAIIVIQSALADDRSK---VVDFVESELLNSDLRSIGAKS 69
TVV+ L RGWC D + LK+++ S+L +K +V+ VE+ELLN D++ IG KS
Sbjct: 15 TVVINALTSRGWCFRDVEYLKSLVTEISSLIGGGNKTGAIVESVEAELLNMDIKLIGGKS 74
Query: 70 LPHPSLLRNPSSHLLGPKVLQISSVRDISKXXXXX---XXXXXXXXXXXXTDGHSEITAV 126
LP P+ LR SHL GPKVLQIS VRD+++ TDG +EI+A+
Sbjct: 75 LPDPTELRR-CSHLQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEISAL 133
Query: 127 EYSHIPVIPDDVVPGTKIRLENKVAVHSGIACLNPKVLTVLGGVVESLYEEWQMNKKYSV 186
EYSHIP I +DV PGTK+RLENK + G+ CL PK +TVLGG V+SL EEWQM KKY+
Sbjct: 134 EYSHIPTINNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEWQMKKKYAS 193
Query: 187 FSRSSVRQLEDRDTGGPPSFVKLQVGSSS---GYN---SRSDKPIAVVGETEMRTTGIE- 239
+RS E + GPP F +L++ + S YN SR++ PIA E+ ++ G E
Sbjct: 194 LARSQ----ESKAGDGPPPFEELKIRTGSHHRDYNKTTSRNNVPIAA--ESSVKHAGGEK 247
Query: 240 -QNTKQKAEVLDVNLKSKLPPGRSD----------DKPSSSGTRPKEVVESVPVXXXXXX 288
++++ N + P SD +K SSS TRPK+VVE+VP+
Sbjct: 248 GESSEVDGNKRGTNKNIQRNPADSDPKISVEVENQEKRSSSDTRPKQVVEAVPLQNQAAA 307
Query: 289 XXXXXXXXXPYQDGRNPK-------GWKHRGRGRQEDPVVFTLDEYEKRKS--QAKPSIK 339
+ R + G +ED VFTLDE+EKR + A P+
Sbjct: 308 QILLEKMKHSSSNDRQYQGRRGRGRGRGRGRGREEEDSAVFTLDEWEKRNTGGGALPT-A 366
Query: 340 DDVVDVSRDEDLAWQLQNQFNLEDS 364
+ D +RDEDLAWQLQNQF+LEDS
Sbjct: 367 NHPSDTTRDEDLAWQLQNQFDLEDS 391
>AT5G19950.1 | Symbols: | Domain of unknown function (DUF1767) |
chr5:6741163-6743702 REVERSE LENGTH=443
Length = 443
Score = 241 bits (614), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 159/385 (41%), Positives = 214/385 (55%), Gaps = 41/385 (10%)
Query: 13 TVVLETLRGRGWCLEDTDQLKAIIVIQSALADDRSK---VVDFVESELLNSDLRSIGAKS 69
TVV+ L RGWC D + LK+++ S+L +K +V+ VE+ELLN D++ IG KS
Sbjct: 15 TVVINALTSRGWCFRDVEYLKSLVTEISSLIGGGNKTGAIVESVEAELLNMDIKLIGGKS 74
Query: 70 LPHPSLLRNPSSHLLGPKVLQISSVRDISKXXXXX---XXXXXXXXXXXXTDGHSEITAV 126
LP P+ LR SHL GPKVLQIS VRD+++ TDG +EI+A+
Sbjct: 75 LPDPTELRR-CSHLQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEISAL 133
Query: 127 EYSHIPVIPDDVVPGTKIRLENKVAVHSGIACLNPKVLTVLGGVVESLYEEWQMNKKYSV 186
EYSHIP I +DV PGTK+RLENK + G+ CL PK +TVLGG V+SL EEWQM KKY+
Sbjct: 134 EYSHIPTINNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEWQMKKKYAS 193
Query: 187 FSRSSVRQLEDRDTGGPPSFVKLQVGSSS---GYN---SRSDKPIAVVGETEMRTTGIE- 239
+RS E + GPP F +L++ + S YN SR++ PIA E+ ++ G E
Sbjct: 194 LARSQ----ESKAGDGPPPFEELKIRTGSHHRDYNKTTSRNNVPIAA--ESSVKHAGGEK 247
Query: 240 -QNTKQKAEVLDVNLKSKLPPGRSD----------DKPSSSGTRPKEVVESVPVXXXXXX 288
++++ N + P SD +K SSS TRPK+VVE+VP+
Sbjct: 248 GESSEVDGNKRGTNKNIQRNPADSDPKISVEVENQEKRSSSDTRPKQVVEAVPLQNQAAA 307
Query: 289 XXXXXXXXXPYQDGRNPK-------GWKHRGRGRQEDPVVFTLDEYEKRKS--QAKPSIK 339
+ R + G +ED VFTLDE+EKR + A P+
Sbjct: 308 QILLEKMKHSSSNDRQYQGRRGRGRGRGRGRGREEEDSAVFTLDEWEKRNTGGGALPT-A 366
Query: 340 DDVVDVSRDEDLAWQLQNQFNLEDS 364
+ D +RDEDLAWQLQNQF+LEDS
Sbjct: 367 NHPSDTTRDEDLAWQLQNQFDLEDS 391
>AT5G19950.3 | Symbols: | Domain of unknown function (DUF1767) |
chr5:6741163-6743702 REVERSE LENGTH=441
Length = 441
Score = 241 bits (614), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 159/385 (41%), Positives = 214/385 (55%), Gaps = 41/385 (10%)
Query: 13 TVVLETLRGRGWCLEDTDQLKAIIVIQSALADDRSK---VVDFVESELLNSDLRSIGAKS 69
TVV+ L RGWC D + LK+++ S+L +K +V+ VE+ELLN D++ IG KS
Sbjct: 15 TVVINALTSRGWCFRDVEYLKSLVTEISSLIGGGNKTGAIVESVEAELLNMDIKLIGGKS 74
Query: 70 LPHPSLLRNPSSHLLGPKVLQISSVRDISKXXXXX---XXXXXXXXXXXXTDGHSEITAV 126
LP P+ LR SHL GPKVLQIS VRD+++ TDG +EI+A+
Sbjct: 75 LPDPTELRR-CSHLQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEISAL 133
Query: 127 EYSHIPVIPDDVVPGTKIRLENKVAVHSGIACLNPKVLTVLGGVVESLYEEWQMNKKYSV 186
EYSHIP I +DV PGTK+RLENK + G+ CL PK +TVLGG V+SL EEWQM KKY+
Sbjct: 134 EYSHIPTINNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEWQMKKKYAS 193
Query: 187 FSRSSVRQLEDRDTGGPPSFVKLQVGSSS---GYN---SRSDKPIAVVGETEMRTTGIE- 239
+RS E + GPP F +L++ + S YN SR++ PIA E+ ++ G E
Sbjct: 194 LARSQ----ESKAGDGPPPFEELKIRTGSHHRDYNKTTSRNNVPIAA--ESSVKHAGGEK 247
Query: 240 -QNTKQKAEVLDVNLKSKLPPGRSD----------DKPSSSGTRPKEVVESVPVXXXXXX 288
++++ N + P SD +K SSS TRPK+VVE+VP+
Sbjct: 248 GESSEVDGNKRGTNKNIQRNPADSDPKISVEVENQEKRSSSDTRPKQVVEAVPLQNQAAA 307
Query: 289 XXXXXXXXXPYQDGRNPK-------GWKHRGRGRQEDPVVFTLDEYEKRKS--QAKPSIK 339
+ R + G +ED VFTLDE+EKR + A P+
Sbjct: 308 QILLEKMKHSSSNDRQYQGRRGRGRGRGRGRGREEEDSAVFTLDEWEKRNTGGGALPT-A 366
Query: 340 DDVVDVSRDEDLAWQLQNQFNLEDS 364
+ D +RDEDLAWQLQNQF+LEDS
Sbjct: 367 NHPSDTTRDEDLAWQLQNQFDLEDS 391