Miyakogusa Predicted Gene

Lj1g3v4483920.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4483920.1 Non Chatacterized Hit- tr|B9SWI6|B9SWI6_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,39.52,4e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.32493.1
         (191 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19650.1 | Symbols:  | Mitochondrial transcription terminatio...    69   2e-12
AT5G06810.1 | Symbols:  | Mitochondrial transcription terminatio...    65   3e-11
AT5G45113.1 | Symbols:  | mitochondrial transcription terminatio...    62   3e-10

>AT4G19650.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr4:10691674-10695166 FORWARD
           LENGTH=575
          Length = 575

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 4/126 (3%)

Query: 5   LSLKLKAYEELGVAASTLVDAVAASPSLLVGDVDLDFVKVVEKLKEHFVAKGGGWVEEHF 64
           L++KL+ YE LG++ +T++  V + P LLVG +D +F  VV+KLK   V  G  W+  + 
Sbjct: 196 LAMKLRGYENLGLSKATVIKLVTSCPLLLVGGIDAEFSSVVDKLKGLQV--GCDWLGRYL 253

Query: 65  LDGGVYCNWGMVLRLLCLLSEVGFREGHIDDELIRDRPCVVFHESGGRALSLIAFLSKFG 124
            D   Y +W  +L  +  L +VG +E  +   L++  P +V   SG +   L   L K G
Sbjct: 254 SDRKTY-SWRRILETIEFLDKVGCKEEKLSS-LLKTYPALVIEGSGKKFYVLFGRLFKAG 311

Query: 125 LSVDRI 130
           L V+ I
Sbjct: 312 LQVNEI 317


>AT5G06810.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr5:2108493-2112256 FORWARD
           LENGTH=1141
          Length = 1141

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 6/134 (4%)

Query: 5   LSLKLKAYEELGVAASTLVDAVAASPSLLVGDVDLDFVKVVEKLKEHFVAKGGGWVEEHF 64
           L+ K+K+YE+LG +   L   +  SPS+L+GD+++   KV+E LK   +  G  WV E+ 
Sbjct: 758 LASKIKSYEDLGFSKLFLSKLIVCSPSILIGDMNVGLAKVMEMLKA--IGFGVDWVTENL 815

Query: 65  LDGGVYCNWGMVLRLLCLLSEVGFREGHIDDELIRDRPCVVFHESGGRALSLIAFLSKFG 124
            +   Y +W  + R L  L ++   E  +  ELIR  P ++F +SG   L L  F +K G
Sbjct: 816 SEEVSY-DWSSMHRCLSFLRDLYVDENEL-CELIRKMPRLIFEDSGEWTLILAGFEAKLG 873

Query: 125 LSVDRIGNSSWYQN 138
            S   +  SS +Q 
Sbjct: 874 SSRSEL--SSLFQK 885



 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 5/122 (4%)

Query: 5   LSLKLKAYEELGVAASTLVDAVAASPSLLVGDVDLDFVKVVEKLKEHFVAKGGGWVEEHF 64
           L+ K+KAYE+LG +   L   +  SP +L+G  +++ V+VV+ L+   +     WV E+ 
Sbjct: 205 LASKIKAYEDLGFSRLFLSKLIVCSPRVLMGHTNIELVQVVKTLQS--LGFEFEWVMENL 262

Query: 65  LDGGVYCNWGMVLRLLCLLSEVGFREGHIDDELIRDRPCVVFHESGGRALSLIAFLSKFG 124
            D G   +W  V R+L LL E+ F E  +   LIR+ P ++F  SG     L+ F +K G
Sbjct: 263 SDEGP--DWSSVHRVLSLLREICFDEEKLYG-LIRNCPSLLFENSGKWTGILVGFETKLG 319

Query: 125 LS 126
            S
Sbjct: 320 AS 321


>AT5G45113.1 | Symbols:  | mitochondrial transcription termination
           factor-related / mTERF-related | chr5:18232277-18233521
           REVERSE LENGTH=414
          Length = 414

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 4/126 (3%)

Query: 5   LSLKLKAYEELGVAASTLVDAVAASPSLLVGDVDLDFVKVVEKLKEHFVAKGGGWVEEHF 64
           L+ KL+ YE L +  + ++  V   P LLVG +D +FV VV KLK   +  G  W+  + 
Sbjct: 36  LASKLEPYEILVLRKAIVIKLVTCCPLLLVGGIDCEFVSVVNKLKG--LNLGCDWLARYL 93

Query: 65  LDGGVYCNWGMVLRLLCLLSEVGFREGHIDDELIRDRPCVVFHESGGRALSLIAFLSKFG 124
                Y NW  +L  + LL +VGF+E  + + L++  P +V   SG +A  +     K G
Sbjct: 94  SVRKTY-NWRRILETMELLEKVGFKEKKLSN-LLKAYPDLVGETSGNKAYIMFEKFHKVG 151

Query: 125 LSVDRI 130
           L ++ I
Sbjct: 152 LQMNEI 157