Miyakogusa Predicted Gene
- Lj1g3v4483360.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4483360.1 Non Chatacterized Hit- tr|B9S4W1|B9S4W1_RICCO
Nucleic acid binding protein, putative OS=Ricinus comm,41.94,2e-19,no
description,Zinc finger C2H2-type/integrase DNA-binding domain;
seg,NULL; ZINC_FINGER_C2H2_2,Zinc,CUFF.32451.1
(149 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43540.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily... 69 1e-12
AT3G09290.1 | Symbols: TAC1 | telomerase activator1 | chr3:28561... 63 7e-11
AT2G37740.1 | Symbols: ATZFP10, ZFP10 | zinc-finger protein 10 |... 62 2e-10
AT3G53820.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily... 60 8e-10
AT4G17810.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily... 55 1e-08
AT3G23130.1 | Symbols: SUP, FON1, FLO10 | C2H2 and C2HC zinc fin... 54 3e-08
AT5G06070.1 | Symbols: RBE, RAB | C2H2 and C2HC zinc fingers sup... 54 4e-08
AT3G23140.1 | Symbols: URO | C2H2 and C2HC zinc fingers superfam... 51 3e-07
AT2G42410.1 | Symbols: ZFP11, ATZFP11 | zinc finger protein 11 |... 50 7e-07
AT5G01860.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily... 50 7e-07
AT5G27880.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily... 46 9e-06
>AT5G43540.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:17496993-17497406 FORWARD LENGTH=137
Length = 137
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 28/123 (22%)
Query: 31 YECIFCKRGFTTAQALGGHMNIHRKDKVNKSKPSFPNKVDDSNY-------AELGFYSEV 83
YEC FCKRGFT AQALGGHMNIHR+D++NK+K V S ++LG Y +V
Sbjct: 35 YECTFCKRGFTNAQALGGHMNIHRRDRLNKAKVQNDADVALSQTHRCFHVASDLGGYEQV 94
Query: 84 SNHPQGGNNYYANNYHQVYFPATRASNIENQQDWRQRNLSLYGNPFSVRDNAEDGLDLEL 143
+ +NY Q + A+ R+ N+ + GN +DLEL
Sbjct: 95 DSVVL---RTTTSNYIQHLRIGSMAT--------RRENVVVEGNE----------IDLEL 133
Query: 144 RLG 146
RLG
Sbjct: 134 RLG 136
>AT3G09290.1 | Symbols: TAC1 | telomerase activator1 |
chr3:2856141-2856659 FORWARD LENGTH=172
Length = 172
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 22 DDTAGAGRSYECIFCKRGFTTAQALGGHMNIHRKDKVNKSKPSFPNKVDD----SNYAEL 77
DD+ RSY C FC RGF+ AQALGGHMNIHR+D+ + + DD S+ +E+
Sbjct: 26 DDSLNQSRSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQKLMEDNKDDVVAESDASEV 85
Query: 78 GFYSEVSNHPQGGNNYYANNYHQVYFPATRASNIENQQDWRQRNLSLYGNPFSVRDNAED 137
Q G +++ Q + S + + W Q + + V + + D
Sbjct: 86 VSLDLNEQQQQQGEALTCDDHDQ--YVDNDISPKQKLEFWVQESKLDTNDHGKVTEASID 143
Query: 138 G-----------LDLELRLGR 147
G LDLELRLG+
Sbjct: 144 GSSSSHHRDIEVLDLELRLGQ 164
>AT2G37740.1 | Symbols: ATZFP10, ZFP10 | zinc-finger protein 10 |
chr2:15827706-15828620 REVERSE LENGTH=304
Length = 304
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 19/96 (19%)
Query: 22 DDTAGA---GRSYECIFCKRGFTTAQALGGHMNIHRKDKV-------------NKSKPSF 65
DD AG+ RSY C FC+R F +AQALGGHMN+HR+D+ + S P +
Sbjct: 27 DDAAGSLWPPRSYTCSFCRREFKSAQALGGHMNVHRRDRARLKQADDQYLFPKSSSSPEY 86
Query: 66 PNKVDDSNYAELGFYSEVSNHPQGGNNYYANNYHQV 101
P+ D N E Y+ V N NY+ + V
Sbjct: 87 PSHKDSDNIHETSCYTLVFN---TKPNYFKTQHSCV 119
>AT3G53820.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr3:19938706-19939134 FORWARD LENGTH=142
Length = 142
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 24 TAGAGRSYECIFCKRGFTTAQALGGHMNIHRKDKVNKSKPSFPNKVDDSNYAELGFYSEV 83
+ R Y C FC+RGF+ AQALGGHMNIHRKD+ + + K +DS A
Sbjct: 14 SGSQARPYICEFCERGFSNAQALGGHMNIHRKDRAKLRQANL--KEEDSEDA----ICTT 67
Query: 84 SNHPQGGNNYYANNYHQVYFPATRASNIENQQ---DWRQRNLSLYGNPFSVRDNAEDGLD 140
S + G + P + + ++++ D ++N+ + S + D +D
Sbjct: 68 SRNRFGQELIELPFFVDTVGPRRKGEDDKSEKGLGDEEKKNMRILQKALS---QSADVID 124
Query: 141 LELRLGRHP 149
LELRLG P
Sbjct: 125 LELRLGLDP 133
>AT4G17810.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr4:9906918-9907532 FORWARD LENGTH=204
Length = 204
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 66/161 (40%), Gaps = 41/161 (25%)
Query: 29 RSYECIFCKRGFTTAQALGGHMNIHRKDK-----------------------VNKSKPSF 65
RSY C FC+R F +AQALGGHMN+HR+D+ +N P
Sbjct: 44 RSYTCNFCRREFRSAQALGGHMNVHRRDRASSRAHQGSTVAAAARSGHGGMLLNSCAPPL 103
Query: 66 PNKV-----DDSNYAELGFYSEVSNHPQG--GNNY-YANNYHQVYFPATRA--SNIENQQ 115
P SN L + ++ N P G GN+ N Y FP + S + +
Sbjct: 104 PTTTLIIQSTASNIEGLSHFYQLQN-PSGIFGNSGDMVNLYGTTSFPPSNLPFSMLNSPV 162
Query: 116 DWRQRNLSL-------YGNPFSVRDNAEDGLDLELRLGRHP 149
+ R + G+ + D LDLELRLG HP
Sbjct: 163 EVPPRLIEYSTGDDESIGSMKEATGTSVDELDLELRLGHHP 203
>AT3G23130.1 | Symbols: SUP, FON1, FLO10 | C2H2 and C2HC zinc
fingers superfamily protein | chr3:8242504-8243118
FORWARD LENGTH=204
Length = 204
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 29 RSYECIFCKRGFTTAQALGGHMNIHRKDKV 58
RSY C FCKR F +AQALGGHMN+HR+D+
Sbjct: 45 RSYTCSFCKREFRSAQALGGHMNVHRRDRA 74
>AT5G06070.1 | Symbols: RBE, RAB | C2H2 and C2HC zinc fingers
superfamily protein | chr5:1828426-1829106 REVERSE
LENGTH=226
Length = 226
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 29 RSYECIFCKRGFTTAQALGGHMNIHRKDKVNKSKPSF-PNKVDDSNYAELGFYSEV 83
RSY C FC R F +AQALGGHMN+HR+D+ + S P+ D + E +V
Sbjct: 53 RSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLSPSSTDQATPPECDRQQQV 108
>AT3G23140.1 | Symbols: URO | C2H2 and C2HC zinc fingers
superfamily protein | chr3:8250579-8251097 FORWARD
LENGTH=172
Length = 172
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 3/39 (7%)
Query: 22 DDTAGAG---RSYECIFCKRGFTTAQALGGHMNIHRKDK 57
D +G+G R+Y+C CKRGFT QALGGH NIHR+++
Sbjct: 9 DSGSGSGENRRTYDCDICKRGFTNPQALGGHNNIHRRER 47
>AT2G42410.1 | Symbols: ZFP11, ATZFP11 | zinc finger protein 11 |
chr2:17658150-17658794 FORWARD LENGTH=214
Length = 214
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 29 RSYECIFCKRGFTTAQALGGHMNIHRKDKV 58
++Y C FC+R F +AQALGGHMN+HR+D+
Sbjct: 47 KNYTCSFCRREFRSAQALGGHMNVHRRDRA 76
>AT5G01860.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:335630-336277 FORWARD LENGTH=215
Length = 215
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 26 GAGRSYECIFCKRGFTTAQALGGHMNIHRKDKVNKSKPSFPNKVDDSNYAELGFYSE 82
R + C FCK+ F+T+QALGGH N H++++ + K + NY EL YS+
Sbjct: 62 AKARVFACTFCKKEFSTSQALGGHQNAHKQERSLAKR----RKEIEINYPELSIYSQ 114
>AT5G27880.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:9885908-9886744 FORWARD LENGTH=278
Length = 278
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 25 AGAGRSYECIFCKRGFTTAQALGGHMNIHRKDK 57
+ + + Y C FCK+GF+T+QALGGH N H++++
Sbjct: 74 SKSNKIYTCHFCKKGFSTSQALGGHQNAHKQER 106