Miyakogusa Predicted Gene

Lj1g3v4480290.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4480290.2 tr|Q25BJ5|Q25BJ5_BRAOL Basic helix-loop-helix
(BHLH) family transcription factor OS=Brassica
olerace,31.3,1e-18,seg,NULL; bHLH-MYC_N,Transcription factor MYC/MYB
N-terminal; EGL3 (ENHANCER OF GLABRA3), DNA BINDIN,CUFF.32504.2
         (235 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16430.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   174   4e-44
AT1G01260.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    74   1e-13
AT1G01260.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    74   1e-13
AT1G01260.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    74   1e-13
AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type tran...    72   4e-13
AT4G00480.1 | Symbols: ATMYC1, myc1 | basic helix-loop-helix (bH...    70   1e-12
AT4G00480.2 | Symbols: ATMYC1, myc1 | basic helix-loop-helix (bH...    70   1e-12
AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHL...    65   3e-11
AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH) DNA-...    58   7e-09
AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he...    58   7e-09
AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he...    58   7e-09
AT5G46760.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-bind...    53   2e-07
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |...    52   3e-07
AT4G17880.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-bind...    52   3e-07

>AT4G16430.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:9267599-9269002 FORWARD
           LENGTH=467
          Length = 467

 Score =  174 bits (442), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/237 (42%), Positives = 133/237 (56%), Gaps = 37/237 (15%)

Query: 1   MHMFYLTSAYYVFGFNS-QCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVV 59
           + MFYL S Y+ F  ++ + GP  ++   K +WA++  SCL+ Y  RSFLA+ AGFQTV+
Sbjct: 136 LDMFYLASLYFSFRCDTNKYGPAGTYVSGKPLWAADLPSCLSYYRVRSFLARSAGFQTVL 195

Query: 60  FVPFKGGGVELGSKEMMPEEQGVLDMVRATFGESSSAQGKVLPKIFGHELSLGDTKSQSI 119
            VP   G VELGS   +PE++ V++MV++ FG S   Q K  PKIFG +LSLG  K +S+
Sbjct: 196 SVPVNSGVVELGSLRHIPEDKSVIEMVKSVFGGSDFVQAKEAPKIFGRQLSLGGAKPRSM 255

Query: 120 TISFSPKVEDDSGFTSDSYEVQAL-GVNHAYGNSSNGCIGDGEAKMFPQLNQMIPGNFNP 178
           +I+FSPK EDD+GF+ +SYEVQA+ G N  YG                            
Sbjct: 256 SINFSPKTEDDTGFSLESYEVQAIGGSNQVYGYE-------------------------- 289

Query: 179 QARVSSLDLGNEDASSPHLDDXXXXXXXXXXXXXXEEPLNHVEAERQRREKLNQRFY 235
           Q +  +L L +E                       EE LNHVEAERQRREKLNQRFY
Sbjct: 290 QGKDETLYLTDEQKPRKR---------GRKPANGREEALNHVEAERQRREKLNQRFY 337


>AT1G01260.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:109595-111367 FORWARD
           LENGTH=590
          Length = 590

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 2   HMFYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFV 61
            MF L+S Y+ F    + GPG  F  +K +W S+  +  + Y  RSFLAK AG QTVV V
Sbjct: 149 EMFLLSSMYFSFP-RGEGGPGKCFASAKPVWLSDVVNSGSDYCVRSFLAKSAGIQTVVLV 207

Query: 62  PFKGGGVELGSKEMMPEEQGVLDMVRATFGES-SSAQGKVLP------------KIFGHE 108
           P   G VELGS   +PE +  +  +R+ F  S    +   LP            KIFG +
Sbjct: 208 PTDLGVVELGSTSCLPESEDSILSIRSLFTSSLPPVRAVALPVTVAEKIDDNRTKIFGKD 267

Query: 109 L 109
           L
Sbjct: 268 L 268


>AT1G01260.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:109595-111367 FORWARD
           LENGTH=590
          Length = 590

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 2   HMFYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFV 61
            MF L+S Y+ F    + GPG  F  +K +W S+  +  + Y  RSFLAK AG QTVV V
Sbjct: 149 EMFLLSSMYFSFP-RGEGGPGKCFASAKPVWLSDVVNSGSDYCVRSFLAKSAGIQTVVLV 207

Query: 62  PFKGGGVELGSKEMMPEEQGVLDMVRATFGES-SSAQGKVLP------------KIFGHE 108
           P   G VELGS   +PE +  +  +R+ F  S    +   LP            KIFG +
Sbjct: 208 PTDLGVVELGSTSCLPESEDSILSIRSLFTSSLPPVRAVALPVTVAEKIDDNRTKIFGKD 267

Query: 109 L 109
           L
Sbjct: 268 L 268


>AT1G01260.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:109595-111367 FORWARD
           LENGTH=590
          Length = 590

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 2   HMFYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFV 61
            MF L+S Y+ F    + GPG  F  +K +W S+  +  + Y  RSFLAK AG QTVV V
Sbjct: 149 EMFLLSSMYFSFP-RGEGGPGKCFASAKPVWLSDVVNSGSDYCVRSFLAKSAGIQTVVLV 207

Query: 62  PFKGGGVELGSKEMMPEEQGVLDMVRATFGES-SSAQGKVLP------------KIFGHE 108
           P   G VELGS   +PE +  +  +R+ F  S    +   LP            KIFG +
Sbjct: 208 PTDLGVVELGSTSCLPESEDSILSIRSLFTSSLPPVRAVALPVTVAEKIDDNRTKIFGKD 267

Query: 109 L 109
           L
Sbjct: 268 L 268


>AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type
           transcription factor | chr2:19091187-19092887 REVERSE
           LENGTH=566
          Length = 566

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 14/146 (9%)

Query: 3   MFYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVP 62
           +F+L S Y+ F  + + GPG  +   K +W S+A +  + Y  RSF+AK AG +T+V VP
Sbjct: 153 IFFLASMYFFFN-HGEGGPGRCYSSGKHVWLSDAVNSESDYCFRSFMAKSAGIRTIVMVP 211

Query: 63  FKGGGVELGSKEMMPEEQGVLDMVRATFGESSSAQGKV---------LPKIFGHELSLGD 113
              G +ELGS   +PE  G++  V+A F    +    V         + K+FG +LS   
Sbjct: 212 TDAGVLELGSVWSLPENIGLVKSVQALFMRRVTQPVMVTSNTNMTGGIHKLFGQDLSGAH 271

Query: 114 TKSQSITISFSPKVEDDSGFTSDSYE 139
              + + +    +   D  FT  S+E
Sbjct: 272 AYPKKLEV----RRNLDERFTPQSWE 293



 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 214 EEPLNHVEAERQRREKLNQRFY 235
           EEPLNHVEAERQRREKLNQRFY
Sbjct: 391 EEPLNHVEAERQRREKLNQRFY 412


>AT4G00480.1 | Symbols: ATMYC1, myc1 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:217106-219684
           REVERSE LENGTH=526
          Length = 526

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 8/116 (6%)

Query: 4   FYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVPF 63
           +YL S  YVF   SQC PG +    ++IW   A    N+  SRS LA+ A  QTVV  P+
Sbjct: 132 YYLVSMSYVFS-PSQCLPGRASATGETIWLCNAQYAENKLFSRSLLARSASIQTVVCFPY 190

Query: 64  KGGGVELGSKEMMPEEQGVLDMVRATFGESSSAQG-----KVLPKIF--GHELSLG 112
            GG +ELG  E++ E+  +L  +++   E S+ Q      K+  KI    H+L LG
Sbjct: 191 LGGVIELGVTELISEDHNLLRNIKSCLMEISAHQDNDDEKKMEIKISEEKHQLPLG 246


>AT4G00480.2 | Symbols: ATMYC1, myc1 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:216866-219684
           REVERSE LENGTH=580
          Length = 580

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 8/116 (6%)

Query: 4   FYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVPF 63
           +YL S  YVF   SQC PG +    ++IW   A    N+  SRS LA+ A  QTVV  P+
Sbjct: 132 YYLVSMSYVFS-PSQCLPGRASATGETIWLCNAQYAENKLFSRSLLARSASIQTVVCFPY 190

Query: 64  KGGGVELGSKEMMPEEQGVLDMVRATFGESSSAQG-----KVLPKIF--GHELSLG 112
            GG +ELG  E++ E+  +L  +++   E S+ Q      K+  KI    H+L LG
Sbjct: 191 LGGVIELGVTELISEDHNLLRNIKSCLMEISAHQDNDDEKKMEIKISEEKHQLPLG 246


>AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr5:16529457-16532866
           FORWARD LENGTH=637
          Length = 637

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 4   FYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVPF 63
           +YL    +VF    +  PG +F   + IW   A +  ++  SRS LAK A  +TVV  PF
Sbjct: 121 YYLVCMSFVFNI-GEGMPGRTFANGEPIWLCNAHTADSKVFSRSLLAKSAAVKTVVCFPF 179

Query: 64  KGGGVELGSKEMMPEEQGVLDMVRATFGESSSAQGKVLP 102
            GG VE+G+ E + E+  V+  V+ +F E+      +LP
Sbjct: 180 LGGVVEIGTTEHITEDMNVIQCVKTSFLEAPDPYATILP 218


>AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:23599809-23602734
           FORWARD LENGTH=596
          Length = 596

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 4   FYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVPF 63
           +YL    +VF       PG +    + IW   A +  ++  +RS LAK A  QTVV  PF
Sbjct: 117 YYLVCMSFVFNIGEGI-PGGALSNGEPIWLCNAETADSKVFTRSLLAKSASLQTVVCFPF 175

Query: 64  KGGGVELGSKEMMPEEQGVLDMVRATFGES 93
            GG +E+G+ E + E+  V+  V+  F E+
Sbjct: 176 LGGVLEIGTTEHIKEDMNVIQSVKTLFLEA 205


>AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr1:23599809-23602734 FORWARD LENGTH=596
          Length = 596

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 4   FYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVPF 63
           +YL    +VF       PG +    + IW   A +  ++  +RS LAK A  QTVV  PF
Sbjct: 117 YYLVCMSFVFNIGEGI-PGGALSNGEPIWLCNAETADSKVFTRSLLAKSASLQTVVCFPF 175

Query: 64  KGGGVELGSKEMMPEEQGVLDMVRATFGES 93
            GG +E+G+ E + E+  V+  V+  F E+
Sbjct: 176 LGGVLEIGTTEHIKEDMNVIQSVKTLFLEA 205


>AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr1:23599809-23602734 FORWARD LENGTH=596
          Length = 596

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 4   FYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVPF 63
           +YL    +VF       PG +    + IW   A +  ++  +RS LAK A  QTVV  PF
Sbjct: 117 YYLVCMSFVFNIGEGI-PGGALSNGEPIWLCNAETADSKVFTRSLLAKSASLQTVVCFPF 175

Query: 64  KGGGVELGSKEMMPEEQGVLDMVRATFGES 93
            GG +E+G+ E + E+  V+  V+  F E+
Sbjct: 176 LGGVLEIGTTEHIKEDMNVIQSVKTLFLEA 205


>AT5G46760.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-binding
           family protein | chr5:18974231-18976009 FORWARD
           LENGTH=592
          Length = 592

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 214 EEPLNHVEAERQRREKLNQRFY 235
           EEPLNHVEAERQRREKLNQRFY
Sbjct: 411 EEPLNHVEAERQRREKLNQRFY 432


>AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |
           Basic helix-loop-helix (bHLH) DNA-binding family protein
           | chr1:11799042-11800913 REVERSE LENGTH=623
          Length = 623

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 214 EEPLNHVEAERQRREKLNQRFY 235
           EEPLNHVEAERQRREKLNQRFY
Sbjct: 448 EEPLNHVEAERQRREKLNQRFY 469


>AT4G17880.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-binding
           family protein | chr4:9933702-9935471 REVERSE LENGTH=589
          Length = 589

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 214 EEPLNHVEAERQRREKLNQRFY 235
           EEPLNHVEAERQRREKLNQRFY
Sbjct: 412 EEPLNHVEAERQRREKLNQRFY 433