Miyakogusa Predicted Gene

Lj1g3v4467940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4467940.1 Non Chatacterized Hit- tr|I1KU63|I1KU63_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.43611
PE,56.58,0.000000000000009, ,CUFF.32423.1
         (104 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20960.2 | Symbols: emb1507 | U5 small nuclear ribonucleoprot...    70   4e-13
AT1G20960.1 | Symbols: emb1507 | U5 small nuclear ribonucleoprot...    70   4e-13
AT2G42270.1 | Symbols:  | U5 small nuclear ribonucleoprotein hel...    65   7e-12

>AT1G20960.2 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein
           helicase, putative | chr1:7302591-7309914 REVERSE
           LENGTH=2171
          Length = 2171

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/37 (83%), Positives = 32/37 (86%)

Query: 32  EKLVKISSMPDWVQPAFKGMTQLNRVQRKVYDAALFK 68
           EKLVKI+ MPDW QPAFKGM QLNRVQ KVYD ALFK
Sbjct: 483 EKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFK 519


>AT1G20960.1 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein
           helicase, putative | chr1:7302591-7309914 REVERSE
           LENGTH=2171
          Length = 2171

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/37 (83%), Positives = 32/37 (86%)

Query: 32  EKLVKISSMPDWVQPAFKGMTQLNRVQRKVYDAALFK 68
           EKLVKI+ MPDW QPAFKGM QLNRVQ KVYD ALFK
Sbjct: 483 EKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFK 519


>AT2G42270.1 | Symbols:  | U5 small nuclear ribonucleoprotein
           helicase | chr2:17604330-17610848 FORWARD LENGTH=2172
          Length = 2172

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/44 (65%), Positives = 34/44 (77%)

Query: 25  AEPFGPYEKLVKISSMPDWVQPAFKGMTQLNRVQRKVYDAALFK 68
           ++ F   EKLVKIS +P+W QPAF+GM QLNRVQ KVY  ALFK
Sbjct: 477 SKKFDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSKVYGTALFK 520