Miyakogusa Predicted Gene

Lj1g3v4450430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4450430.1 Non Chatacterized Hit- tr|I3S0A7|I3S0A7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.68,0,trpA:
tryptophan synthase, alpha subunit,Tryptophan synthase, alpha chain;
Ribulose-phoshate binding,CUFF.32402.1
         (311 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02610.1 | Symbols:  | Aldolase-type TIM barrel family protei...   452   e-127
AT3G54640.1 | Symbols: TSA1, TRP3 | tryptophan synthase alpha ch...   449   e-126

>AT4G02610.1 | Symbols:  | Aldolase-type TIM barrel family protein |
           chr4:1147662-1149217 FORWARD LENGTH=275
          Length = 275

 Score =  452 bits (1162), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/264 (81%), Positives = 246/264 (93%)

Query: 47  TVGLSETFSRLKKQGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLAD 106
           TVGLSETF+RLK QGKVA IPYITAGDPDLSTTA+ALKVLDSCGSDIIELGVPYSDPLAD
Sbjct: 10  TVGLSETFARLKSQGKVALIPYITAGDPDLSTTAKALKVLDSCGSDIIELGVPYSDPLAD 69

Query: 107 GPVIQAAATRSLARGTNFNAIISMLKEVTPQLSCPVALFSYYNPILKRGTDKFMSTIRDS 166
           GP IQAAA RSL +GTNFN+IISMLKEV PQLSCP+ALF+YYNPIL+RG + +M+ I+++
Sbjct: 70  GPAIQAAARRSLLKGTNFNSIISMLKEVIPQLSCPIALFTYYNPILRRGVENYMTVIKNA 129

Query: 167 GVHGLVVPDVPLEETEILRTEAKKNGIELVLLTTPTTPIDRMKAIVDAAEGFVYLVSSVG 226
           GVHGL+VPDVPLEETE LR EA+K+ IELVLLTTPTTP +RM AIV+A+EGF+YLVSSVG
Sbjct: 130 GVHGLLVPDVPLEETETLRNEARKHQIELVLLTTPTTPKERMNAIVEASEGFIYLVSSVG 189

Query: 227 VTGARASVSDKVQALLQEIKEATSKPVAVGFGISKPEHVEQVAGWGADGVIVGSAMVKIL 286
           VTG R SV++KVQ+LLQ+IKEATSKPVAVGFGISKPEHV+QVA WGADGVIVGSAMVKIL
Sbjct: 190 VTGTRESVNEKVQSLLQQIKEATSKPVAVGFGISKPEHVKQVAEWGADGVIVGSAMVKIL 249

Query: 287 GDAKSPQEGLKELENFTRSLKSAL 310
           G+++SP++GLKELE FT+SLKSAL
Sbjct: 250 GESESPEQGLKELEFFTKSLKSAL 273


>AT3G54640.1 | Symbols: TSA1, TRP3 | tryptophan synthase alpha chain
           | chr3:20223331-20225303 REVERSE LENGTH=312
          Length = 312

 Score =  449 bits (1155), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/312 (75%), Positives = 270/312 (86%), Gaps = 3/312 (0%)

Query: 1   MAIALKSSCFF-QVKKPEAGFPVYFSSKKAIISVKRNTPVAAIRTME-TVGLSETFSRLK 58
           MAIA KS  FF Q  K + GF  + S   + +S KR TP+A++ T   T+GL++TF++LK
Sbjct: 1   MAIAFKSGVFFLQSPKSQIGFR-HSSPPDSSLSFKRFTPMASLSTSSPTLGLADTFTQLK 59

Query: 59  KQGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL 118
           KQGKVAFIPYITAGDPDLSTTAEALKVLD+CGSDIIELGVPYSDPLADGPVIQAAATRSL
Sbjct: 60  KQGKVAFIPYITAGDPDLSTTAEALKVLDACGSDIIELGVPYSDPLADGPVIQAAATRSL 119

Query: 119 ARGTNFNAIISMLKEVTPQLSCPVALFSYYNPILKRGTDKFMSTIRDSGVHGLVVPDVPL 178
            RGTN ++I+ ML +V PQ+SCP++LF+YYNPILKRG  KFMS+IR  GV GLVVPDVPL
Sbjct: 120 ERGTNLDSILEMLDKVVPQISCPISLFTYYNPILKRGLGKFMSSIRAVGVQGLVVPDVPL 179

Query: 179 EETEILRTEAKKNGIELVLLTTPTTPIDRMKAIVDAAEGFVYLVSSVGVTGARASVSDKV 238
           EETE+LR EA  N IELVLLTTPTTP +RMK IVDA+EGF+YLVSS+GVTGAR+SVS KV
Sbjct: 180 EETEMLRKEALNNDIELVLLTTPTTPTERMKLIVDASEGFIYLVSSIGVTGARSSVSGKV 239

Query: 239 QALLQEIKEATSKPVAVGFGISKPEHVEQVAGWGADGVIVGSAMVKILGDAKSPQEGLKE 298
           Q+LL++IKEAT KPVAVGFGISKPEHV+Q+AGWGADGVIVGSAMVK+LGDAKSP EGLKE
Sbjct: 240 QSLLKDIKEATDKPVAVGFGISKPEHVKQIAGWGADGVIVGSAMVKLLGDAKSPTEGLKE 299

Query: 299 LENFTRSLKSAL 310
           LE  T+SLKSAL
Sbjct: 300 LEKLTKSLKSAL 311