Miyakogusa Predicted Gene

Lj1g3v4450310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4450310.1 tr|I0YVK3|I0YVK3_9CHLO Vacuolar ATP synthase
(Fragment) OS=Coccomyxa subellipsoidea C-169 PE=4 SV=1,71.43,4e-19,no
description,NULL; ATP-synt_F,ATPase, V1/A1 complex, subunit F;
SUBFAMILY NOT NAMED,NULL; VACUOLAR,CUFF.32414.1
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02620.1 | Symbols:  | vacuolar ATPase subunit F family prote...   133   3e-32

>AT4G02620.1 | Symbols:  | vacuolar ATPase subunit F family
          protein | chr4:1149419-1151132 REVERSE LENGTH=128
          Length = 128

 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 71/77 (92%)

Query: 1  MANKAQIRTNNSALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFK 60
          MA +A I   NSALIAMIADEDTVVGFL+AGVGNVD+RRKTNYLIVDSKTTV+QIEDAFK
Sbjct: 1  MAGRATIPARNSALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFK 60

Query: 61 EFTTREDIAIVLISQYV 77
          EF+ R+DIAI+L+SQY+
Sbjct: 61 EFSARDDIAIILLSQYI 77