Miyakogusa Predicted Gene

Lj1g3v4450290.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4450290.2 tr|B9GS80|B9GS80_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_816116 PE=4
SV=1,65.15,6e-18,Interferon-induced guanylate-binding protein 1
(GBP1), C-terminal domain,Guanylate-binding protein, ,CUFF.32397.2
         (234 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38840.1 | Symbols:  | Guanylate-binding family protein | chr...   370   e-103
AT5G46070.1 | Symbols:  | Guanylate-binding family protein | chr...    59   4e-09

>AT2G38840.1 | Symbols:  | Guanylate-binding family protein |
           chr2:16227329-16232115 FORWARD LENGTH=602
          Length = 602

 Score =  370 bits (950), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 173/232 (74%), Positives = 208/232 (89%)

Query: 3   WNRVKGQDVAFEPAKLLWLIQRDFLQGKSVQEMVDEALRRVPNSHGDKNIDMVNQIRDSL 62
           + RVKG+DVAFEP+KLLWLIQRDFLQGKSV++MVDEALR VPN  G+KNID VNQIRDSL
Sbjct: 179 YGRVKGEDVAFEPSKLLWLIQRDFLQGKSVKQMVDEALRHVPNEDGNKNIDQVNQIRDSL 238

Query: 63  AIMGDNSTAFSLPQPHLQRTKLCDMKDSELDPSYVKKRDKLKELVASLIRPKIVQGKSLN 122
           AIMGDNSTAFSLPQPHL RTKLCD+KD +LD +YV +RD+LK+LVAS+IRPKIVQGK+LN
Sbjct: 239 AIMGDNSTAFSLPQPHLMRTKLCDLKDEDLDSTYVARRDQLKKLVASIIRPKIVQGKTLN 298

Query: 123 GKEFVSFLEQILEALNKGEIPSTGSLVEIFNKNILERCLKLYSERMATVDLPLSEESLQE 182
           GKEF+SFLEQIL+ALNKGEIPSTGSLVE+FNK+I+ERC+KLY+E+M  V LP+SEESLQ 
Sbjct: 299 GKEFISFLEQILDALNKGEIPSTGSLVEVFNKDIVERCVKLYNEKMVRVRLPMSEESLQS 358

Query: 183 SHDRSRGEAMEMFDQQHFGRHHAKKSIMQLEEEINKVYKNALFQNEYKSSKL 234
           +H+ +  EA++ FD QHFGR HAKKS+ QL+E++ +VYKN +  NEY+SSKL
Sbjct: 359 AHEMAHNEAIKAFDAQHFGRQHAKKSVDQLDEQMQEVYKNFVLANEYQSSKL 410


>AT5G46070.1 | Symbols:  | Guanylate-binding family protein |
           chr5:18683468-18688397 FORWARD LENGTH=1082
          Length = 1082

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 27/218 (12%)

Query: 13  FEPAKLLWLIQRDFL-------QGKSVQEMVDEALRRVPNSHGDKNIDMVNQIRDSLAIM 65
           F P   +WL+ RDF        +  S ++ ++ ALR V  S GD  I   N+IRDS+  +
Sbjct: 204 FSPI-FVWLL-RDFYLDLVEDNRKISPRDYLEIALRPVQGSGGD--IGAKNEIRDSIRAL 259

Query: 66  GDNSTAFSLPQP-----HLQRTKLCDMKDSELDPSYVKKRDKLKELVASLIRPKIVQGKS 120
             +   F+L +P      LQR     ++  +L P +    D   + V    RPK + G  
Sbjct: 260 FPDRECFTLVRPLNNEKDLQRLDQISLE--KLRPEFGAGLDAFTKFVFEKTRPKQLGGTV 317

Query: 121 LNGKEFVSFLEQILEALNKGEIPSTGSLVEIFNKNILERCLKLYSE----RMATVDLPLS 176
           + G   V   +  L+ALN G +P+  S  +   +     C + Y       MA  D   +
Sbjct: 318 MTGPILVGITQSYLDALNNGAVPTITSSWQSVEET---ECRRAYDSGVEAYMAAFDQSKA 374

Query: 177 EE--SLQESHDRSRGEAMEMFDQQHFGRHHAKKSIMQL 212
            E  +L+E H+ +  +A+ +F+    G   A+K    L
Sbjct: 375 PEEGALREEHEEAVRKALAIFNSNAVGNGSARKKFEDL 412