Miyakogusa Predicted Gene

Lj1g3v4447020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4447020.1 Non Chatacterized Hit- tr|D7TYT2|D7TYT2_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,50.55,5e-19,
,CUFF.32444.1
         (91 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23690.1 | Symbols:  | Polynucleotide adenylyltransferase fam...    82   1e-16
AT1G28090.2 | Symbols:  | Polynucleotide adenylyltransferase fam...    60   3e-10
AT1G28090.1 | Symbols:  | Polynucleotide adenylyltransferase fam...    60   3e-10
AT1G28090.3 | Symbols:  | Polynucleotide adenylyltransferase fam...    60   3e-10
AT3G48830.1 | Symbols:  | polynucleotide adenylyltransferase fam...    59   5e-10

>AT5G23690.1 | Symbols:  | Polynucleotide adenylyltransferase family
           protein | chr5:7987664-7990466 FORWARD LENGTH=527
          Length = 527

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 59/90 (65%), Gaps = 1/90 (1%)

Query: 1   MTTRHMVSQAMADYPQAPHPDMVFISLGMYLKAISIFYCLRARAGR-NFLSKQVIKTDYE 59
           MT  + +S+AM+ YPQAP+ D+VFI L +YL+A  IF C++    R  F +KQ  K +Y 
Sbjct: 437 MTDAYFISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVKNEETRIGFEAKQGSKIEYG 496

Query: 60  SLAHGDLQEVWHMLAMVVFDIVYPLHLDRD 89
           SL  G   E+ H+ A VVFD V+PL+L ++
Sbjct: 497 SLNSGYFPEIRHVFARVVFDTVFPLNLSQE 526


>AT1G28090.2 | Symbols:  | Polynucleotide adenylyltransferase family
           protein | chr1:9796045-9798891 FORWARD LENGTH=505
          Length = 505

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 1   MTTRHMVSQAMADYPQAPHPDMVFISLGMYLKAISIFYCLRARAG--RNFLSKQVIKTDY 58
           +  R  ++ AM+ YPQAP  DMVF+S  M  +   +F  +R +    R+ +     + +Y
Sbjct: 419 LNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMFGNVRRKGNQERDDVPSLERRINY 478

Query: 59  ESLAHGDLQEVWHMLAMVVFDIVYPL 84
           +SLA GD  E   + A +VFD +YPL
Sbjct: 479 KSLALGDFHETRRVFARIVFDTIYPL 504


>AT1G28090.1 | Symbols:  | Polynucleotide adenylyltransferase family
           protein | chr1:9795826-9798891 FORWARD LENGTH=541
          Length = 541

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 1   MTTRHMVSQAMADYPQAPHPDMVFISLGMYLKAISIFYCLRARAG--RNFLSKQVIKTDY 58
           +  R  ++ AM+ YPQAP  DMVF+S  M  +   +F  +R +    R+ +     + +Y
Sbjct: 455 LNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMFGNVRRKGNQERDDVPSLERRINY 514

Query: 59  ESLAHGDLQEVWHMLAMVVFDIVYPL 84
           +SLA GD  E   + A +VFD +YPL
Sbjct: 515 KSLALGDFHETRRVFARIVFDTIYPL 540


>AT1G28090.3 | Symbols:  | Polynucleotide adenylyltransferase family
           protein | chr1:9796236-9798891 FORWARD LENGTH=478
          Length = 478

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 1   MTTRHMVSQAMADYPQAPHPDMVFISLGMYLKAISIFYCLRARAG--RNFLSKQVIKTDY 58
           +  R  ++ AM+ YPQAP  DMVF+S  M  +   +F  +R +    R+ +     + +Y
Sbjct: 392 LNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMFGNVRRKGNQERDDVPSLERRINY 451

Query: 59  ESLAHGDLQEVWHMLAMVVFDIVYPL 84
           +SLA GD  E   + A +VFD +YPL
Sbjct: 452 KSLALGDFHETRRVFARIVFDTIYPL 477


>AT3G48830.1 | Symbols:  | polynucleotide adenylyltransferase family
           protein / RNA recognition motif (RRM)-containing protein
           | chr3:18103272-18110216 FORWARD LENGTH=881
          Length = 881

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 37/59 (62%)

Query: 1   MTTRHMVSQAMADYPQAPHPDMVFISLGMYLKAISIFYCLRARAGRNFLSKQVIKTDYE 59
           MT    +S+AMA YPQAP+ DMVFI L +YL A  IF C++    + F+ KQ  K + E
Sbjct: 432 MTDGRFISKAMAAYPQAPYSDMVFIPLQLYLDARRIFECVKENGQKGFVPKQDSKREPE 490