Miyakogusa Predicted Gene

Lj1g3v4446660.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4446660.1 tr|A9SV66|A9SV66_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_188742,34.62,5e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; Kelch motif,NULL; no description,Galactose
oxidase,,NODE_60282_length_971_cov_46.759010.path1.1
         (166 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63220.2 | Symbols:  | Galactose oxidase/kelch repeat superfa...   246   5e-66
AT3G63220.1 | Symbols:  | Galactose oxidase/kelch repeat superfa...   246   6e-66
AT1G16250.1 | Symbols:  | Galactose oxidase/kelch repeat superfa...    47   6e-06

>AT3G63220.2 | Symbols:  | Galactose oxidase/kelch repeat
           superfamily protein | chr3:23357540-23358598 REVERSE
           LENGTH=352
          Length = 352

 Score =  246 bits (628), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 133/166 (80%)

Query: 1   MYDPEKDVWIPMPDLHRTHNSACSGVMIGGKVHVLHKDMSTVQVLDNAGAGWIVEDCGWF 60
           MYDPE DVW  +PDLH+THNSACSG+++ GKVHVLHK +STVQVL++   GW V+D GW 
Sbjct: 187 MYDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWP 246

Query: 61  QSPMAVVQDALYVMSHGLIHKQEKDVRKVVGSASEFRRRIGFGMIGLGNELYVIGGFIGP 120
           Q PM VV+D LYVMSHGL+ KQE D  K+V SASEF+RRIG  M  L +E+ ++GG IGP
Sbjct: 247 QGPMVVVEDVLYVMSHGLVFKQEGDTWKMVASASEFKRRIGMAMTSLSDEVLIVGGVIGP 306

Query: 121 DRLNWDLKPLSDVDVLTLGNERPTWRQAAPMTRCRGTIFGCTLLRI 166
           DRLNWD+KPLSDVD LT+GN+RP WR  APMTRCRGTI GCT L I
Sbjct: 307 DRLNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCRGTILGCTQLTI 352


>AT3G63220.1 | Symbols:  | Galactose oxidase/kelch repeat
           superfamily protein | chr3:23357540-23358577 REVERSE
           LENGTH=345
          Length = 345

 Score =  246 bits (627), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 133/166 (80%)

Query: 1   MYDPEKDVWIPMPDLHRTHNSACSGVMIGGKVHVLHKDMSTVQVLDNAGAGWIVEDCGWF 60
           MYDPE DVW  +PDLH+THNSACSG+++ GKVHVLHK +STVQVL++   GW V+D GW 
Sbjct: 180 MYDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWP 239

Query: 61  QSPMAVVQDALYVMSHGLIHKQEKDVRKVVGSASEFRRRIGFGMIGLGNELYVIGGFIGP 120
           Q PM VV+D LYVMSHGL+ KQE D  K+V SASEF+RRIG  M  L +E+ ++GG IGP
Sbjct: 240 QGPMVVVEDVLYVMSHGLVFKQEGDTWKMVASASEFKRRIGMAMTSLSDEVLIVGGVIGP 299

Query: 121 DRLNWDLKPLSDVDVLTLGNERPTWRQAAPMTRCRGTIFGCTLLRI 166
           DRLNWD+KPLSDVD LT+GN+RP WR  APMTRCRGTI GCT L I
Sbjct: 300 DRLNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCRGTILGCTQLTI 345


>AT1G16250.1 | Symbols:  | Galactose oxidase/kelch repeat
           superfamily protein | chr1:5557214-5558697 FORWARD
           LENGTH=383
          Length = 383

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 77/197 (39%), Gaps = 38/197 (19%)

Query: 1   MYDPEKDVWIPMPDLHRTHNSACSGVMIGGKVHVLH-----KDMSTVQVLDNAGAGW-IV 54
           +YDP  D W  +P + R     CSG+   G  HVL       + ++ +V +     W  V
Sbjct: 186 VYDPVADRWEELPAMPRPQMD-CSGLSYRGCFHVLSDQVGFAEQNSSEVFNPRDMTWSTV 244

Query: 55  EDCGWFQSPMAVV-----QDALYVM---SHGLIHKQEKDVRK----------VVGSASEF 96
           ED   F   M         D +Y +      LI  ++ D  +          V+ +    
Sbjct: 245 EDVWPFSRAMQFAVQVMKNDRVYTIVDWGESLIKTRDTDEGEWYNVGSVPSVVLPNHPRE 304

Query: 97  RRRIGFGMIGLGNELYVIGGFIGPDRLNWDLKPLSDVDVLTLGN-------ERP-TWRQA 148
               G+G   L NELYVIGG +    L W+       D++ L         +RP  WR+ 
Sbjct: 305 LEAFGYGFAALRNELYVIGGKV----LKWEESGAGRFDIVRLPVVRVCNPLDRPLNWRET 360

Query: 149 APMT-RCRGTIFGCTLL 164
            PM     G+I GC  L
Sbjct: 361 KPMCIPAGGSIIGCVSL 377