Miyakogusa Predicted Gene
- Lj1g3v4435480.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4435480.1 gene.g36475.t1.1
(270 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02760.2 | Symbols: | RNI-like superfamily protein | chr4:12... 117 1e-26
AT4G02760.1 | Symbols: | RNI-like superfamily protein | chr4:12... 117 1e-26
AT4G02760.3 | Symbols: | RNI-like superfamily protein | chr4:12... 116 1e-26
AT4G02740.1 | Symbols: | F-box/RNI-like superfamily protein | c... 107 8e-24
AT4G02733.1 | Symbols: | F-box family protein | chr4:1210173-12... 93 2e-19
>AT4G02760.2 | Symbols: | RNI-like superfamily protein |
chr4:1224336-1227857 REVERSE LENGTH=506
Length = 506
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 106/221 (47%), Gaps = 46/221 (20%)
Query: 50 DSPDLIDRALKMGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIKVTYIQSPNFIQLKIQ 109
D +DR L++ SLL + RKRA+ NS SWPL +LTIKV
Sbjct: 82 DQDRFLDRTLQLASLLYKSTKRCIRKRATLQNSTSWPLLPELTIKV-------------- 127
Query: 110 CNHEMVVILCGMFDFLIRRSLNQVFSMLDTQSLCYXXXXXXXXXXXXXDPMCYANLDLTT 169
FSMLDT+SL D +CY+++DLTT
Sbjct: 128 ------------------------FSMLDTKSLMQASACCTMFNKCAMDRVCYSHIDLTT 163
Query: 170 PVPKVNNAVVATMIQRAGKALRNAIVDVSNISWIDKRSRQGRDPSSILTRCCLSPLSGDG 229
V+N VV MI RAGK LR+ + + +IS +S+LTR CL+PL+ +
Sbjct: 164 AAEDVDNGVVCVMIHRAGKELRS--LKLGSIS------SSAEPTTSLLTRSCLTPLTFNH 215
Query: 230 GAPGALLRKLHLYNIERMDNASLGGALLACPSLLDLEIVGL 270
G G LR LHLY++ +D SL L AC +L DL+IVGL
Sbjct: 216 GFTGGHLRSLHLYHLRMIDCGSLSPVLSACLNLTDLKIVGL 256
>AT4G02760.1 | Symbols: | RNI-like superfamily protein |
chr4:1224336-1227857 REVERSE LENGTH=506
Length = 506
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 106/221 (47%), Gaps = 46/221 (20%)
Query: 50 DSPDLIDRALKMGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIKVTYIQSPNFIQLKIQ 109
D +DR L++ SLL + RKRA+ NS SWPL +LTIKV
Sbjct: 82 DQDRFLDRTLQLASLLYKSTKRCIRKRATLQNSTSWPLLPELTIKV-------------- 127
Query: 110 CNHEMVVILCGMFDFLIRRSLNQVFSMLDTQSLCYXXXXXXXXXXXXXDPMCYANLDLTT 169
FSMLDT+SL D +CY+++DLTT
Sbjct: 128 ------------------------FSMLDTKSLMQASACCTMFNKCAMDRVCYSHIDLTT 163
Query: 170 PVPKVNNAVVATMIQRAGKALRNAIVDVSNISWIDKRSRQGRDPSSILTRCCLSPLSGDG 229
V+N VV MI RAGK LR+ + + +IS +S+LTR CL+PL+ +
Sbjct: 164 AAEDVDNGVVCVMIHRAGKELRS--LKLGSIS------SSAEPTTSLLTRSCLTPLTFNH 215
Query: 230 GAPGALLRKLHLYNIERMDNASLGGALLACPSLLDLEIVGL 270
G G LR LHLY++ +D SL L AC +L DL+IVGL
Sbjct: 216 GFTGGHLRSLHLYHLRMIDCGSLSPVLSACLNLTDLKIVGL 256
>AT4G02760.3 | Symbols: | RNI-like superfamily protein |
chr4:1224336-1227857 REVERSE LENGTH=551
Length = 551
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 106/221 (47%), Gaps = 46/221 (20%)
Query: 50 DSPDLIDRALKMGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIKVTYIQSPNFIQLKIQ 109
D +DR L++ SLL + RKRA+ NS SWPL +LTIKV
Sbjct: 82 DQDRFLDRTLQLASLLYKSTKRCIRKRATLQNSTSWPLLPELTIKV-------------- 127
Query: 110 CNHEMVVILCGMFDFLIRRSLNQVFSMLDTQSLCYXXXXXXXXXXXXXDPMCYANLDLTT 169
FSMLDT+SL D +CY+++DLTT
Sbjct: 128 ------------------------FSMLDTKSLMQASACCTMFNKCAMDRVCYSHIDLTT 163
Query: 170 PVPKVNNAVVATMIQRAGKALRNAIVDVSNISWIDKRSRQGRDPSSILTRCCLSPLSGDG 229
V+N VV MI RAGK LR+ + + +IS +S+LTR CL+PL+ +
Sbjct: 164 AAEDVDNGVVCVMIHRAGKELRS--LKLGSIS------SSAEPTTSLLTRSCLTPLTFNH 215
Query: 230 GAPGALLRKLHLYNIERMDNASLGGALLACPSLLDLEIVGL 270
G G LR LHLY++ +D SL L AC +L DL+IVGL
Sbjct: 216 GFTGGHLRSLHLYHLRMIDCGSLSPVLSACLNLTDLKIVGL 256
>AT4G02740.1 | Symbols: | F-box/RNI-like superfamily protein |
chr4:1217756-1220834 REVERSE LENGTH=479
Length = 479
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 104/217 (47%), Gaps = 44/217 (20%)
Query: 54 LIDRALKMGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIKVTYIQSPNFIQLKIQCNHE 113
L+DR L++ SLLL + RKRAS HNS SW L +LTIKV
Sbjct: 65 LVDRTLELASLLLDSTRRCFRKRASVHNSNSWSLPPELTIKV------------------ 106
Query: 114 MVVILCGMFDFLIRRSLNQVFSMLDTQSLCYXXXXXXXXXXXXXDPMCYANLDLTTPVPK 173
FSMLDT+S+ D +CY+++DLTT
Sbjct: 107 --------------------FSMLDTKSMMQAAVCCTMFNKCAMDRLCYSHIDLTTSARY 146
Query: 174 VNNAVVATMIQRAGKALRNAIVDVSNISWIDKRSRQGRDPSSILTRCCLSPLSGDGGAPG 233
+ VV+TMI RAGK LR+ + + + R+ + +L+ CLSPL+ + G G
Sbjct: 147 ADKGVVSTMINRAGKELRS--LKLGRVV----RTAGSDSAAPLLSGSCLSPLAYNHGFLG 200
Query: 234 ALLRKLHLYNIERMDNASLGGALLACPSLLDLEIVGL 270
+ LR L LYN+ + SL AL CP++ DL IVGL
Sbjct: 201 SRLRSLRLYNLRPIKYRSLCDALSVCPNITDLRIVGL 237
>AT4G02733.1 | Symbols: | F-box family protein |
chr4:1210173-1211512 REVERSE LENGTH=301
Length = 301
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 104/237 (43%), Gaps = 62/237 (26%)
Query: 54 LIDRALKMGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIKVTYIQSPNFIQLKIQCNHE 113
L+DR L+ SLLL + S+KRA+ HNS+SW L +LT+KV
Sbjct: 64 LVDRTLERFSLLLQSTKRCSQKRATLHNSISWFLPSELTVKV------------------ 105
Query: 114 MVVILCGMFDFLIRRSLNQVFSMLDTQSLCYXXXXXXXXXXXXXDPMCYANLDLTTPVPK 173
FSM+DT+SL DP+CY ++DLT
Sbjct: 106 --------------------FSMVDTKSLMQASACCTMFNNCAMDPLCYFHIDLTKAFKH 145
Query: 174 VNNAVVATMIQRAGKALRNAIVDVSNISWIDKRS-----------------RQGRDP--- 213
V++ V+ T++ R+GK LR+ + + RS + GRDP
Sbjct: 146 VDDRVLRTLLNRSGKQLRSLKLGRVDAPGCLFRSSCLPPLILYGNNARRALKLGRDPPGL 205
Query: 214 SSILTRCCLSPLSGDGGAPGALLRKLHLYNIERMDNASLGGALLACPSLLDLEIVGL 270
S+ TR C PL G LL LH+Y++ M+ S L AC +L DL+IVG+
Sbjct: 206 GSLFTRSCFDPLK----LTGNLLTSLHIYSLGFMNMNSFLDPLSACSNLTDLKIVGV 258