Miyakogusa Predicted Gene

Lj1g3v4434330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4434330.1 Non Chatacterized Hit- tr|A5BG99|A5BG99_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,55.81,4e-18,seg,NULL; no description,NULL; RNI-like,NULL;
F-BOX/LRR  PROTEIN-RELATED, ARATH,NULL; F-BOX/LEUCINE ,CUFF.35686.1
         (494 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02760.2 | Symbols:  | RNI-like superfamily protein | chr4:12...   244   1e-64
AT4G02760.1 | Symbols:  | RNI-like superfamily protein | chr4:12...   244   1e-64
AT4G02740.1 | Symbols:  | F-box/RNI-like superfamily protein | c...   241   9e-64
AT4G02760.3 | Symbols:  | RNI-like superfamily protein | chr4:12...   240   1e-63
AT4G02733.1 | Symbols:  | F-box family protein | chr4:1210173-12...   148   7e-36

>AT4G02760.2 | Symbols:  | RNI-like superfamily protein |
           chr4:1224336-1227857 REVERSE LENGTH=506
          Length = 506

 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 157/390 (40%), Positives = 211/390 (54%), Gaps = 45/390 (11%)

Query: 49  HDSSDLIDRALKMGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIKVFSMLDTQSLCYXX 108
            D    +DR L++ SLL  +     RKRA+  NS SWPL  +LTIKVFSMLDT+SL    
Sbjct: 81  FDQDRFLDRTLQLASLLYKSTKRCIRKRATLQNSTSWPLLPELTIKVFSMLDTKSLMQAS 140

Query: 109 XXXXXXXXXXXDPMCYANLDLTTPVPKVNNAVVATMIQRAGKALRSLKLGVVPGATTSPG 168
                      D +CY+++DLTT    V+N VV  MI RAGK LRSLKLG +        
Sbjct: 141 ACCTMFNKCAMDRVCYSHIDLTTAAEDVDNGVVCVMIHRAGKELRSLKLGSI-------- 192

Query: 169 CCQPLICAVRNAIVDVSNISWIDKRSRQGRDPSSILTRCCLSPLSGDGGAPGALLRKLHL 228
                                    S      +S+LTR CL+PL+ + G  G  LR LHL
Sbjct: 193 -------------------------SSSAEPTTSLLTRSCLTPLTFNHGFTGGHLRSLHL 227

Query: 229 YNIERMDNASLGGALLACPSLLDLEIVGLHVELRQTLMSVSANCHLIERLCFESSKAG-- 286
           Y++  +D  SL   L AC +L DL+IVGL   L Q L  ++ NC LIE L  E   A   
Sbjct: 228 YHLRMIDCGSLSPVLSACLNLTDLKIVGLDNPLEQ-LGLLTRNCRLIEHLFIEIYGAAGL 286

Query: 287 -RDDSLKAQTCSELVNNCPHLASLSLRGFKLHDCKVRILVKGFRKLKYVDFSTSYSITGN 345
             D SL      E   NCP+L+S+SL GF L+D  ++ L+KGFR+LK+++ S+S  I+G 
Sbjct: 287 ITDSSLL-----EFAANCPNLSSISLLGFLLNDAILQKLIKGFRRLKHINLSSSPEISGC 341

Query: 346 FLRNLGSCNGGNLLEVLILRDCMHLKETEATRLLTAILAGDFKLLVHLDISNREGLASEV 405
           F R L  C   + LE LILRDC  LKE+E    L ++LAGDFK +  +D+SN +GL    
Sbjct: 342 FFRGLELCGKDSPLETLILRDCYILKESEVLLFLNSLLAGDFKYIRLIDVSNVDGLV--C 399

Query: 406 DWYRRCYNPSTMPIKQVLEARPDMHLVAEY 435
           D   R + P   PI+++ + R ++  VA +
Sbjct: 400 DGGNRTFEPR-FPIEELKKQRSNVTFVAIF 428


>AT4G02760.1 | Symbols:  | RNI-like superfamily protein |
           chr4:1224336-1227857 REVERSE LENGTH=506
          Length = 506

 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 157/390 (40%), Positives = 211/390 (54%), Gaps = 45/390 (11%)

Query: 49  HDSSDLIDRALKMGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIKVFSMLDTQSLCYXX 108
            D    +DR L++ SLL  +     RKRA+  NS SWPL  +LTIKVFSMLDT+SL    
Sbjct: 81  FDQDRFLDRTLQLASLLYKSTKRCIRKRATLQNSTSWPLLPELTIKVFSMLDTKSLMQAS 140

Query: 109 XXXXXXXXXXXDPMCYANLDLTTPVPKVNNAVVATMIQRAGKALRSLKLGVVPGATTSPG 168
                      D +CY+++DLTT    V+N VV  MI RAGK LRSLKLG +        
Sbjct: 141 ACCTMFNKCAMDRVCYSHIDLTTAAEDVDNGVVCVMIHRAGKELRSLKLGSI-------- 192

Query: 169 CCQPLICAVRNAIVDVSNISWIDKRSRQGRDPSSILTRCCLSPLSGDGGAPGALLRKLHL 228
                                    S      +S+LTR CL+PL+ + G  G  LR LHL
Sbjct: 193 -------------------------SSSAEPTTSLLTRSCLTPLTFNHGFTGGHLRSLHL 227

Query: 229 YNIERMDNASLGGALLACPSLLDLEIVGLHVELRQTLMSVSANCHLIERLCFESSKAG-- 286
           Y++  +D  SL   L AC +L DL+IVGL   L Q L  ++ NC LIE L  E   A   
Sbjct: 228 YHLRMIDCGSLSPVLSACLNLTDLKIVGLDNPLEQ-LGLLTRNCRLIEHLFIEIYGAAGL 286

Query: 287 -RDDSLKAQTCSELVNNCPHLASLSLRGFKLHDCKVRILVKGFRKLKYVDFSTSYSITGN 345
             D SL      E   NCP+L+S+SL GF L+D  ++ L+KGFR+LK+++ S+S  I+G 
Sbjct: 287 ITDSSLL-----EFAANCPNLSSISLLGFLLNDAILQKLIKGFRRLKHINLSSSPEISGC 341

Query: 346 FLRNLGSCNGGNLLEVLILRDCMHLKETEATRLLTAILAGDFKLLVHLDISNREGLASEV 405
           F R L  C   + LE LILRDC  LKE+E    L ++LAGDFK +  +D+SN +GL    
Sbjct: 342 FFRGLELCGKDSPLETLILRDCYILKESEVLLFLNSLLAGDFKYIRLIDVSNVDGLV--C 399

Query: 406 DWYRRCYNPSTMPIKQVLEARPDMHLVAEY 435
           D   R + P   PI+++ + R ++  VA +
Sbjct: 400 DGGNRTFEPR-FPIEELKKQRSNVTFVAIF 428


>AT4G02740.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr4:1217756-1220834 REVERSE LENGTH=479
          Length = 479

 Score =  241 bits (615), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 158/399 (39%), Positives = 215/399 (53%), Gaps = 36/399 (9%)

Query: 54  LIDRALKMGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIKVFSMLDTQSLCYXXXXXXX 113
           L+DR L++ SLLL +     RKRAS HNS SW L  +LTIKVFSMLDT+S+         
Sbjct: 65  LVDRTLELASLLLDSTRRCFRKRASVHNSNSWSLPPELTIKVFSMLDTKSMMQAAVCCTM 124

Query: 114 XXXXXXDPMCYANLDLTTPVPKVNNAVVATMIQRAGKALRSLKLGVVPGATTSPGCCQPL 173
                 D +CY+++DLTT     +  VV+TMI RAGK LRSLKLG V             
Sbjct: 125 FNKCAMDRLCYSHIDLTTSARYADKGVVSTMINRAGKELRSLKLGRV------------- 171

Query: 174 ICAVRNAIVDVSNISWIDKRSRQGRDPSS-ILTRCCLSPLSGDGGAPGALLRKLHLYNIE 232
              VR A                G D ++ +L+  CLSPL+ + G  G+ LR L LYN+ 
Sbjct: 172 ---VRTA----------------GSDSAAPLLSGSCLSPLAYNHGFLGSRLRSLRLYNLR 212

Query: 233 RMDNASLGGALLACPSLLDLEIVGLHVELRQTLMSVSANCHLIERLCFESSKAGRD-DSL 291
            +   SL  AL  CP++ DL IVGL+    +   S++  C LIE L  E+    R  +S 
Sbjct: 213 PIKYRSLCDALSVCPNITDLRIVGLYNLTEELFNSLTKKCRLIEHLFLETYGYPRTLESK 272

Query: 292 KAQTCSELVNNCPHLASLSLRGFKLHDCKVRILVKGFRKLKYVDFSTSYSITGNFLRNLG 351
              +  E V NCP+L SL+L  F L D   R L +  RKLKY++ S S +I G FLR LG
Sbjct: 273 AGSSLVEFVTNCPNLTSLTLIRFGLTDDWARNLAESCRKLKYLNLSRSPTIKGRFLRELG 332

Query: 352 SCNGGNLLEVLILRDCMHLKETEATRLLTAILAGDFKLLVHLDISNREGLASEVDWYRRC 411
                NLL+ LILR C  L+E E      ++L G+FK +  +D+S+  GLAS  D  +RC
Sbjct: 333 LSCKENLLKTLILRSCPKLQEKEVLEFCNSLLTGNFKSIRQIDVSSNSGLASS-DRGKRC 391

Query: 412 YNPSTMPIKQVLEARPDMHLVAEYPSEGSYMEFDADDSD 450
             P+  P++++ E R D+  VA++PS  S   +   D +
Sbjct: 392 NKPN-FPLERLKEERSDVTFVADFPSTSSGKRYGVCDEE 429


>AT4G02760.3 | Symbols:  | RNI-like superfamily protein |
           chr4:1224336-1227857 REVERSE LENGTH=551
          Length = 551

 Score =  240 bits (613), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 156/393 (39%), Positives = 211/393 (53%), Gaps = 48/393 (12%)

Query: 50  DSSDLIDRALKMGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIKVFSMLDTQSLCYXXX 109
           D    +DR L++ SLL  +     RKRA+  NS SWPL  +LTIKVFSMLDT+SL     
Sbjct: 82  DQDRFLDRTLQLASLLYKSTKRCIRKRATLQNSTSWPLLPELTIKVFSMLDTKSLMQASA 141

Query: 110 XXXXXXXXXXDPMCYANLDLTTPVPKVNNAVVATMIQRAGKALRSLKLGVVPGATTSPGC 169
                     D +CY+++DLTT    V+N VV  MI RAGK LRSLKLG +         
Sbjct: 142 CCTMFNKCAMDRVCYSHIDLTTAAEDVDNGVVCVMIHRAGKELRSLKLGSI--------- 192

Query: 170 CQPLICAVRNAIVDVSNISWIDKRSRQGRDPSSILTRCCLSPLSGDGGAPGALLRKLHLY 229
                                   S      +S+LTR CL+PL+ + G  G  LR LHLY
Sbjct: 193 ------------------------SSSAEPTTSLLTRSCLTPLTFNHGFTGGHLRSLHLY 228

Query: 230 NIERMDNASLGGALLACPSLLDLEIVGLHVELR----QTLMSVSANCHLIERLCFESSKA 285
           ++  +D  SL   L AC +L DL+IVGL    R    + L  ++ NC LIE L  E   A
Sbjct: 229 HLRMIDCGSLSPVLSACLNLTDLKIVGLISGSRDNPLEQLGLLTRNCRLIEHLFIEIYGA 288

Query: 286 G---RDDSLKAQTCSELVNNCPHLASLSLRGFKLHDCKVRILVKGFRKLKYVDFSTSYSI 342
                D SL      E   NCP+L+S+SL GF L+D  ++ L+KGFR+LK+++ S+S  I
Sbjct: 289 AGLITDSSLL-----EFAANCPNLSSISLLGFLLNDAILQKLIKGFRRLKHINLSSSPEI 343

Query: 343 TGNFLRNLGSCNGGNLLEVLILRDCMHLKETEATRLLTAILAGDFKLLVHLDISNREGLA 402
           +G F R L  C   + LE LILRDC  LKE+E    L ++LAGDFK +  +D+SN +GL 
Sbjct: 344 SGCFFRGLELCGKDSPLETLILRDCYILKESEVLLFLNSLLAGDFKYIRLIDVSNVDGLV 403

Query: 403 SEVDWYRRCYNPSTMPIKQVLEARPDMHLVAEY 435
              D   R + P   PI+++ + R ++  VA +
Sbjct: 404 --CDGGNRTFEPR-FPIEELKKQRSNVTFVAIF 433


>AT4G02733.1 | Symbols:  | F-box family protein |
           chr4:1210173-1211512 REVERSE LENGTH=301
          Length = 301

 Score =  148 bits (374), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/258 (38%), Positives = 138/258 (53%), Gaps = 22/258 (8%)

Query: 38  FENLLQSMPAPHDSS---DLIDRALKMGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIK 94
           F+ +L  + +  D S    L+DR L+  SLLL +    S+KRA+ HNS+SW L  +LT+K
Sbjct: 45  FDRVLDHLLSSGDVSVQDQLVDRTLERFSLLLQSTKRCSQKRATLHNSISWFLPSELTVK 104

Query: 95  VFSMLDTQSLCYXXXXXXXXXXXXXDPMCYANLDLTTPVPKVNNAVVATMIQRAGKALRS 154
           VFSM+DT+SL               DP+CY ++DLT     V++ V+ T++ R+GK LRS
Sbjct: 105 VFSMVDTKSLMQASACCTMFNNCAMDPLCYFHIDLTKAFKHVDDRVLRTLLNRSGKQLRS 164

Query: 155 LKLGVV--PGATTSPGCCQPLICAVRNAIVDVSNISWIDKRSRQGRDP---SSILTRCCL 209
           LKLG V  PG      C  PLI    NA           +  + GRDP    S+ TR C 
Sbjct: 165 LKLGRVDAPGCLFRSSCLPPLILYGNNA----------RRALKLGRDPPGLGSLFTRSCF 214

Query: 210 SPLSGDGGAPGALLRKLHLYNIERMDNASLGGALLACPSLLDLEIVGLHVELRQTLMSVS 269
            PL       G LL  LH+Y++  M+  S    L AC +L DL+IVG++V L   L  ++
Sbjct: 215 DPLK----LTGNLLTSLHIYSLGFMNMNSFLDPLSACSNLTDLKIVGVNVLLEPILELLA 270

Query: 270 ANCHLIERLCFESSKAGR 287
            NC LIE L  ++   G+
Sbjct: 271 RNCCLIEHLFLDNCSQGK 288