Miyakogusa Predicted Gene

Lj1g3v4432100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4432100.1 tr|Q2LMD6|Q2LMD6_MALDO MYBR5 OS=Malus domestica
PE=2 SV=1,70.13,3e-19,SWI/SNF COMPLEX-RELATED,NULL,CUFF.32339.1
         (68 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52660.1 | Symbols:  | Homeodomain-like superfamily protein |...    86   5e-18
AT5G52660.2 | Symbols:  | Homeodomain-like superfamily protein |...    86   5e-18
AT4G01280.1 | Symbols:  | Homeodomain-like superfamily protein |...    75   1e-14
AT4G01280.2 | Symbols:  | Homeodomain-like superfamily protein |...    75   1e-14
AT1G01520.1 | Symbols:  | Homeodomain-like superfamily protein |...    73   5e-14
AT3G09600.1 | Symbols:  | Homeodomain-like superfamily protein |...    68   1e-12
AT3G09600.2 | Symbols:  | Homeodomain-like superfamily protein |...    67   2e-12
AT5G02840.2 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    59   7e-10
AT5G02840.1 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    59   7e-10
AT5G02840.3 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    59   8e-10
AT2G46830.1 | Symbols: CCA1 | circadian clock associated 1 | chr...    57   3e-09
AT5G17300.1 | Symbols: RVE1 | Homeodomain-like superfamily prote...    55   9e-09
AT1G01060.3 | Symbols: LHY, LHY1 | Homeodomain-like superfamily ...    54   2e-08
AT1G01060.2 | Symbols: LHY, LHY1 | Homeodomain-like superfamily ...    54   2e-08
AT1G01060.1 | Symbols: LHY, LHY1 | Homeodomain-like superfamily ...    54   2e-08
AT1G01060.4 | Symbols: LHY, LHY1 | Homeodomain-like superfamily ...    54   2e-08
AT1G18330.1 | Symbols: EPR1, RVE7 | Homeodomain-like superfamily...    54   3e-08
AT1G18330.2 | Symbols: EPR1, RVE7 | Homeodomain-like superfamily...    54   3e-08
AT3G10113.1 | Symbols:  | Homeodomain-like superfamily protein |...    53   4e-08
AT5G37260.1 | Symbols: RVE2, CIR1 | Homeodomain-like superfamily...    53   4e-08

>AT5G52660.1 | Symbols:  | Homeodomain-like superfamily protein |
          chr5:21359423-21362037 REVERSE LENGTH=330
          Length = 330

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 56/92 (60%), Gaps = 27/92 (29%)

Query: 1  MVSKNPNPPEGFCLDPSTMALPGLSPF------------------------ASVSSAAED 36
          MVS+N    +G+ LDP+ M +PGL P                         A VSS+ ED
Sbjct: 1  MVSRNS---DGYFLDPTGMTVPGLGPSFTAAVSSSSSPTTSSTAVAVADVTAMVSSSEED 57

Query: 37 AAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
           +KKIRKPYTITKSRE+WTEPEHDKFLEALQL
Sbjct: 58 LSKKIRKPYTITKSRESWTEPEHDKFLEALQL 89


>AT5G52660.2 | Symbols:  | Homeodomain-like superfamily protein |
          chr5:21359423-21362037 REVERSE LENGTH=331
          Length = 331

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 56/92 (60%), Gaps = 27/92 (29%)

Query: 1  MVSKNPNPPEGFCLDPSTMALPGLSPF------------------------ASVSSAAED 36
          MVS+N    +G+ LDP+ M +PGL P                         A VSS+ ED
Sbjct: 1  MVSRNS---DGYFLDPTGMTVPGLGPSFTAAVSSSSSPTTSSTAVAVADVTAMVSSSEED 57

Query: 37 AAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
           +KKIRKPYTITKSRE+WTEPEHDKFLEALQL
Sbjct: 58 LSKKIRKPYTITKSRESWTEPEHDKFLEALQL 89


>AT4G01280.1 | Symbols:  | Homeodomain-like superfamily protein |
          chr4:535288-536854 FORWARD LENGTH=302
          Length = 302

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 48/77 (62%), Gaps = 10/77 (12%)

Query: 1  MVSKNPNPPEGF-CLDPSTMALPGLSPFASV--------SSAAEDAAKKIRKPYTITKSR 51
          MVS NP P +GF   D S M+LP    F S+         S +ED   KIRKPYTI KSR
Sbjct: 1  MVSVNPRP-KGFPVFDSSNMSLPSSDGFGSIPATGRTSTVSFSEDPTTKIRKPYTIKKSR 59

Query: 52 ENWTEPEHDKFLEALQL 68
          ENWT+ EHDKFLEAL L
Sbjct: 60 ENWTDQEHDKFLEALHL 76


>AT4G01280.2 | Symbols:  | Homeodomain-like superfamily protein |
          chr4:535288-536854 FORWARD LENGTH=303
          Length = 303

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 48/77 (62%), Gaps = 10/77 (12%)

Query: 1  MVSKNPNPPEGF-CLDPSTMALPGLSPFASV--------SSAAEDAAKKIRKPYTITKSR 51
          MVS NP P +GF   D S M+LP    F S+         S +ED   KIRKPYTI KSR
Sbjct: 1  MVSVNPRP-KGFPVFDSSNMSLPSSDGFGSIPATGRTSTVSFSEDPTTKIRKPYTIKKSR 59

Query: 52 ENWTEPEHDKFLEALQL 68
          ENWT+ EHDKFLEAL L
Sbjct: 60 ENWTDQEHDKFLEALHL 76


>AT1G01520.1 | Symbols:  | Homeodomain-like superfamily protein |
          chr1:190596-192139 FORWARD LENGTH=287
          Length = 287

 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 44/75 (58%), Gaps = 14/75 (18%)

Query: 7  NPPEGFCLDPSTMALPGLSPFASVSSAA-------------EDAAKKIRKPYTITKSREN 53
          NP +  CL P  M+LPG +     ++               ED  KK+RKPYTITKSREN
Sbjct: 5  NPSQAHCL-PMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKSREN 63

Query: 54 WTEPEHDKFLEALQL 68
          WTE EHDKFLEAL L
Sbjct: 64 WTEQEHDKFLEALHL 78


>AT3G09600.1 | Symbols:  | Homeodomain-like superfamily protein |
          chr3:2946459-2948270 FORWARD LENGTH=298
          Length = 298

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 36/43 (83%)

Query: 26 PFASVSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          P  S  + AE ++KK+RKPYTITKSRE+WTE EHDKFLEALQL
Sbjct: 18 PPTSTDAVAEGSSKKVRKPYTITKSRESWTEEEHDKFLEALQL 60


>AT3G09600.2 | Symbols:  | Homeodomain-like superfamily protein |
          chr3:2946459-2948200 FORWARD LENGTH=282
          Length = 282

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 36/43 (83%)

Query: 26 PFASVSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          P  S  + AE ++KK+RKPYTITKSRE+WTE EHDKFLEALQL
Sbjct: 18 PPTSTDAVAEGSSKKVRKPYTITKSRESWTEEEHDKFLEALQL 60


>AT5G02840.2 | Symbols: LCL1 | LHY/CCA1-like 1 |
          chr5:648794-651212 FORWARD LENGTH=293
          Length = 293

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/30 (86%), Positives = 28/30 (93%)

Query: 39 KKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          KK+RK YTITKSRE+WTE EHDKFLEALQL
Sbjct: 36 KKVRKAYTITKSRESWTEGEHDKFLEALQL 65


>AT5G02840.1 | Symbols: LCL1 | LHY/CCA1-like 1 |
          chr5:648794-651212 FORWARD LENGTH=293
          Length = 293

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/30 (86%), Positives = 28/30 (93%)

Query: 39 KKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          KK+RK YTITKSRE+WTE EHDKFLEALQL
Sbjct: 36 KKVRKAYTITKSRESWTEGEHDKFLEALQL 65


>AT5G02840.3 | Symbols: LCL1 | LHY/CCA1-like 1 |
          chr5:648794-651204 FORWARD LENGTH=283
          Length = 283

 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/30 (86%), Positives = 28/30 (93%)

Query: 39 KKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          KK+RK YTITKSRE+WTE EHDKFLEALQL
Sbjct: 36 KKVRKAYTITKSRESWTEGEHDKFLEALQL 65


>AT2G46830.1 | Symbols: CCA1 | circadian clock associated 1 |
          chr2:19246005-19248717 FORWARD LENGTH=608
          Length = 608

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 30/39 (76%)

Query: 30 VSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
           +S+ ED   K RKPYTITK RE WTE EH++F+EAL+L
Sbjct: 3  TNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRL 41


>AT5G17300.1 | Symbols: RVE1 | Homeodomain-like superfamily
          protein | chr5:5690435-5692435 REVERSE LENGTH=387
          Length = 387

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 29/42 (69%)

Query: 27 FASVSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          F   S    D A K+RKPYTITK RE WT+ EH KF+EAL+L
Sbjct: 31 FNDQSFGGNDYAPKVRKPYTITKERERWTDEEHKKFVEALKL 72


>AT1G01060.3 | Symbols: LHY, LHY1 | Homeodomain-like superfamily
          protein | chr1:33992-37061 REVERSE LENGTH=645
          Length = 645

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 30 VSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
           +++ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 3  TNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRL 41


>AT1G01060.2 | Symbols: LHY, LHY1 | Homeodomain-like superfamily
          protein | chr1:33992-37061 REVERSE LENGTH=645
          Length = 645

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 30 VSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
           +++ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 3  TNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRL 41


>AT1G01060.1 | Symbols: LHY, LHY1 | Homeodomain-like superfamily
          protein | chr1:33992-37061 REVERSE LENGTH=645
          Length = 645

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 30 VSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
           +++ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 3  TNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRL 41


>AT1G01060.4 | Symbols: LHY, LHY1 | Homeodomain-like superfamily
          protein | chr1:33992-37061 REVERSE LENGTH=644
          Length = 644

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 30 VSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
           +++ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 3  TNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRL 41


>AT1G18330.1 | Symbols: EPR1, RVE7 | Homeodomain-like superfamily
          protein | chr1:6306196-6307640 REVERSE LENGTH=346
          Length = 346

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 26/29 (89%)

Query: 40 KIRKPYTITKSRENWTEPEHDKFLEALQL 68
          K+RKPYT+TK RE W+E EHD+FLEA++L
Sbjct: 39 KVRKPYTVTKQREKWSEEEHDRFLEAIKL 67


>AT1G18330.2 | Symbols: EPR1, RVE7 | Homeodomain-like superfamily
          protein | chr1:6306196-6307718 REVERSE LENGTH=372
          Length = 372

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 26/29 (89%)

Query: 40 KIRKPYTITKSRENWTEPEHDKFLEALQL 68
          K+RKPYT+TK RE W+E EHD+FLEA++L
Sbjct: 65 KVRKPYTVTKQREKWSEEEHDRFLEAIKL 93


>AT3G10113.1 | Symbols:  | Homeodomain-like superfamily protein |
          chr3:3118043-3119391 REVERSE LENGTH=336
          Length = 336

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 26/29 (89%)

Query: 40 KIRKPYTITKSRENWTEPEHDKFLEALQL 68
          K+RKPYT+TK RE W+E EHD+FLEA++L
Sbjct: 54 KVRKPYTVTKQREKWSEEEHDRFLEAIKL 82


>AT5G37260.1 | Symbols: RVE2, CIR1 | Homeodomain-like superfamily
          protein | chr5:14751344-14752972 REVERSE LENGTH=287
          Length = 287

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 25/29 (86%)

Query: 40 KIRKPYTITKSRENWTEPEHDKFLEALQL 68
          K RKPYTITK RE WTE EH+KF+EAL+L
Sbjct: 25 KTRKPYTITKQREKWTEAEHEKFVEALKL 53