Miyakogusa Predicted Gene

Lj1g3v4407610.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4407610.1 tr|B7FL19|B7FL19_MEDTR Exosome complex
exonuclease RRP4 OS=Medicago truncatula GN=MTR_4g121550 PE=2
,86.54,0,coiled-coil,NULL; RRP4,NULL; PNAS-3 RELATED,Exosome complex
RNA-binding protein 1/RRP40/RRP4; seg,NU,CUFF.32320.1
         (327 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03360.1 | Symbols: ATRRP4, RRP4 | ribosomal RNA processing 4...   424   e-119

>AT1G03360.1 | Symbols: ATRRP4, RRP4 | ribosomal RNA processing 4 |
           chr1:824653-826179 FORWARD LENGTH=322
          Length = 322

 Score =  424 bits (1090), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/314 (65%), Positives = 248/314 (78%), Gaps = 8/314 (2%)

Query: 1   MRGIQLTLSQTQKIRLQKALEQLESLSSKVNSDASVTIADSIPVNHEDGVLKGHGTGDLN 60
           MR +QL LSQTQK+R ++A+E+L+SLSS  NSDASV + DSIPVNH+D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATVCGVVERVNKLVYVRSLRSRYKPEVGDIIIGRVIEVAQKRWRLEINYSQDAFLM 120
           GE++ATVCGVVERV+KLVYVR+LR+RYKPEVGDI++GRVIEVAQKRWR+E+N++QD  LM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNMPDGVQRRRTSVDELNMRCIFEEKDVVCAEVRGFQHDG-LHLQARSKKYGKLNSG 179
           LSSMNMPDG+QRRRTSVDELNMR IF E DVVCAEVR FQHDG L LQARS+KYGKL  G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 180 QLLTVPPYLVKRQKLHFHHLEQYGVDLILGCNGFIWVGEHVEARDEMVEDQVNQSDPQVP 239
           QLL V PYLVKR K HFH++E  G+DLI+GCNGFIWVGEHVE RD M  D  +Q D ++ 
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAID--DQKDEEMI 240

Query: 240 SPNKNSRDLEEQEKNYTALETRKYICRAANAVRVLSTLGFVITVEIIKGXXXXXXXXXXX 299
           S +   +     E+++  LETR+ ICR  NA+RVLS LGF +T+E+I             
Sbjct: 241 SSSSTGK-----EQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 295

Query: 300 XHDMLGSEFGVLVA 313
            HDMLGSEF V+VA
Sbjct: 296 IHDMLGSEFHVVVA 309