Miyakogusa Predicted Gene

Lj1g3v4372230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4372230.1 tr|B9HLW3|B9HLW3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_565231 PE=4
SV=1,50,0.00004,seg,NULL; ZINC_FINGER_C2H2_1,Zinc finger, C2H2;
ZINC_FINGER_C2H2_2,Zinc finger, C2H2,gene.g36400.t1.1
         (214 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01860.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily...    50   8e-07
AT5G05120.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily...    49   3e-06

>AT5G01860.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily
           protein | chr5:335630-336277 FORWARD LENGTH=215
          Length = 215

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 29/42 (69%)

Query: 40  YGCLYCSKRFSSVQAVGGHQNAHRTERVESEMRQLIMMNMRE 81
           + C +C K FS+ QA+GGHQNAH+ ER  ++ R+ I +N  E
Sbjct: 67  FACTFCKKEFSTSQALGGHQNAHKQERSLAKRRKEIEINYPE 108


>AT5G05120.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily
          protein | chr5:1511232-1511837 FORWARD LENGTH=201
          Length = 201

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 40 YGCLYCSKRFSSVQAVGGHQNAHRTER-VESEMRQLIMMNMRERED 84
          Y C YC ++F   QA+GGHQNAHR ER VE + +  +    R   D
Sbjct: 27 YKCKYCPRKFDKTQALGGHQNAHRKEREVEKQQKAFLAHLNRPEPD 72