Miyakogusa Predicted Gene

Lj1g3v4372220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4372220.1 tr|A9S8S4|A9S8S4_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,38.1,0.00000000002,no description,NULL;
seg,NULL,CUFF.32300.1
         (263 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41950.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   224   3e-59

>AT2G41950.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast,
           plant-type cell wall; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to
           53 proteins in 24 species: Archae - 0; Bacteria - 27;
           Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:17513137-17514029 FORWARD LENGTH=266
          Length = 266

 Score =  224 bits (572), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/202 (55%), Positives = 139/202 (68%), Gaps = 9/202 (4%)

Query: 67  PEGNASFVPIEEIIEKDWSVLYHGDPSADN------RIVSAGKVEESSRVLVSTGSEDFV 120
           PEG  S V   E   KDWS L   +  +        RI+ AG++ ESSRVLVS  SE FV
Sbjct: 67  PEGTVSVVDFHE---KDWSFLESMEIDSTEHTQKIERIIKAGELSESSRVLVSISSETFV 123

Query: 121 DCLMGFSPFKSLLVVHDSLLILACIKEKDDGIKCWQGEITLVPEKWAPFDVVFLYFLPGL 180
           D L+  SP + LL+VHDSL  LACIKEK D +KCWQGE+  VPEKW+P D VFLYFLP L
Sbjct: 124 DRLVESSPSQLLLIVHDSLFTLACIKEKYDKVKCWQGEMIYVPEKWSPLDAVFLYFLPAL 183

Query: 181 PFKLDEILGSLANKCSPGGRVIISHPQGRQALEQQREQYPEVVVSDLPDKTYLQTAAAAN 240
           PF LDE+  +L+ +CS G RV+ISHPQGR  LEQQR+++ +VVVSDLPD++ L   A  +
Sbjct: 184 PFDLDELFKTLSQRCSSGARVVISHPQGRLGLEQQRKEFSDVVVSDLPDESTLSNVAEKH 243

Query: 241 SFDVAEFVDEPSFYLAVLICSR 262
           SF++ +FVDE   YLAVL  S+
Sbjct: 244 SFELTQFVDEQGLYLAVLKSSK 265